data_1LC4 # _entry.id 1LC4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LC4 pdb_00001lc4 10.2210/pdb1lc4/pdb NDB DR0007 ? ? RCSB RCSB015829 ? ? WWPDB D_1000015829 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1J7T _pdbx_database_related.details '1J7T contains the X-ray structure of Paromomycin bound to the A site' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LC4 _pdbx_database_status.recvd_initial_deposition_date 2002-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vicens, Q.' 1 'Westhof, E.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal Structure of a Complex between the Aminoglycoside Tobramycin and an Oligonucleotide Containing the Ribosomal Decoding A Site ; Chem.Biol. 9 747 755 2002 CBOLE2 UK 1074-5521 2050 ? 12079787 '10.1016/S1074-5521(02)00153-9' 1 'Crystal Structure of Paromomycin Docked into the Eubacterial Ribosomal Decoding A Site' Structure 9 647 658 2001 STRUE6 UK 0969-2126 2005 ? ? '10.1016/S0969-2126(01)00629-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vicens, Q.' 1 ? primary 'Westhof, E.' 2 ? 1 'Vicens, Q.' 3 ? 1 'Westhof, E.' 4 ? # _cell.entry_id 1LC4 _cell.length_a 46.900 _cell.length_b 32.800 _cell.length_c 52.000 _cell.angle_alpha 90.00 _cell.angle_beta 107.90 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LC4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7355.409 2 ? ? ? 'eubacterial 16S RRNA A SITE' 2 non-polymer syn TOBRAMYCIN 467.514 2 ? ? ? ? 3 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 U n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1LC4 _struct_ref.pdbx_db_accession 1LC4 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LC4 A 1 ? 23 ? 1LC4 1 ? 23 ? 1 23 2 1 1LC4 B 1 ? 23 ? 1LC4 24 ? 46 ? 24 46 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 TOY non-polymer . TOBRAMYCIN ;4-AMINO-2-[4,6-DIAMINO-3-(3-AMINO-6-AMINOMETHYL-5-HYDROXY-TETRAHYDRO-PYRAN-2-YLOXY)-2-HYDROXY-CYCLOHEXYLOXY]-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,5-DIOL ; 'C18 H37 N5 O9' 467.514 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1LC4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.46 _exptl_crystal.density_Matthews 2.59 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details ;MPD, sodium cacodylate, sodium chloride, potassium chloride, magnesium sulfate, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 310K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 KCl ? ? ? 1 5 1 MgSO4 ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-02-24 _diffrn_detector.details 'double crystal monochromator and toroidal focusing mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 1LC4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10 _reflns.d_resolution_high 2.54 _reflns.number_obs ? _reflns.number_all 4899 _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 19.5 _reflns.B_iso_Wilson_estimate 62.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.54 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.133 _reflns_shell.meanI_over_sigI_obs 9.2 _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 479 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LC4 _refine.ls_number_reflns_obs 4644 _refine.ls_number_reflns_all 4899 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.5 _refine.pdbx_data_cutoff_high_absF 1338987.24 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 10 _refine.ls_d_res_high 2.54 _refine.ls_percent_reflns_obs 91.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.5 _refine.ls_number_reflns_R_free 396 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 61.4 _refine.aniso_B[1][1] 0 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.284702 _refine.solvent_model_param_bsol 55.7193 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1J7T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;G. Parkinson, J. Vojtechovsky, L. Clowney, A.T. Brunger, H.M. Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996) ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1LC4 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_sigma_a_free 0.40 _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 898 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1038 _refine_hist.d_res_high 2.54 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005567 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.03474 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 9.71789 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75231 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.R_factor_R_free 0.426 _refine_ls_shell.R_factor_R_free_error 0.058 _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.d_res_high 2.54 _refine_ls_shell.d_res_low 2.70 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_R_work 629 _refine_ls_shell.percent_reflns_R_free 7.8 _refine_ls_shell.percent_reflns_obs 82.5 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LC4 _struct.title 'Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LC4 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Antibiotic-RNA complex, adenine bulges, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 15 N3 ? ? A A 10 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 15 O4 ? ? A A 10 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 15 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 15 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TOY 47 ? 10 'BINDING SITE FOR RESIDUE TOY A 47' AC2 Software B TOY 48 ? 12 'BINDING SITE FOR RESIDUE TOY B 48' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 G A 16 ? G A 16 . ? 1_555 ? 2 AC1 10 A A 18 ? A A 18 . ? 1_555 ? 3 AC1 10 G A 19 ? G A 19 . ? 1_555 ? 4 AC1 10 U A 20 ? U A 20 . ? 1_555 ? 5 AC1 10 HOH E . ? HOH A 115 . ? 1_555 ? 6 AC1 10 HOH E . ? HOH A 154 . ? 1_555 ? 7 AC1 10 C B 4 ? C B 27 . ? 1_555 ? 8 AC1 10 G B 5 ? G B 28 . ? 1_555 ? 9 AC1 10 C B 7 ? C B 30 . ? 1_555 ? 10 AC1 10 A B 8 ? A B 31 . ? 1_555 ? 11 AC2 12 C A 4 ? C A 4 . ? 1_555 ? 12 AC2 12 G A 5 ? G A 5 . ? 1_555 ? 13 AC2 12 C A 7 ? C A 7 . ? 1_555 ? 14 AC2 12 A A 8 ? A A 8 . ? 1_555 ? 15 AC2 12 G B 16 ? G B 39 . ? 1_555 ? 16 AC2 12 A B 18 ? A B 41 . ? 1_555 ? 17 AC2 12 G B 19 ? G B 42 . ? 1_555 ? 18 AC2 12 U B 20 ? U B 43 . ? 1_555 ? 19 AC2 12 HOH F . ? HOH B 110 . ? 1_555 ? 20 AC2 12 HOH F . ? HOH B 122 . ? 1_555 ? 21 AC2 12 HOH F . ? HOH B 127 . ? 1_555 ? 22 AC2 12 HOH F . ? HOH B 169 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LC4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LC4 _atom_sites.fract_transf_matrix[1][1] 0.021322 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] 0.006886 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030488 _atom_sites.fract_transf_matrix[2][3] -0.000001 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020209 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 ? ? ? B . n B 1 2 U 2 25 ? ? ? B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 A 8 31 31 A A B . n B 1 9 C 9 32 32 C C B . n B 1 10 A 10 33 33 A A B . n B 1 11 C 11 34 34 C C B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 G 14 37 37 G G B . n B 1 15 U 15 38 38 U U B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TOY 1 47 47 TOY TOY A . D 2 TOY 1 48 48 TOY TOY B . E 3 HOH 1 104 104 HOH HOH A . E 3 HOH 2 106 106 HOH HOH A . E 3 HOH 3 107 107 HOH HOH A . E 3 HOH 4 115 115 HOH HOH A . E 3 HOH 5 118 118 HOH HOH A . E 3 HOH 6 119 119 HOH HOH A . E 3 HOH 7 120 120 HOH HOH A . E 3 HOH 8 121 121 HOH HOH A . E 3 HOH 9 124 124 HOH HOH A . E 3 HOH 10 128 128 HOH HOH A . E 3 HOH 11 129 129 HOH HOH A . E 3 HOH 12 130 130 HOH HOH A . E 3 HOH 13 131 131 HOH HOH A . E 3 HOH 14 134 134 HOH HOH A . E 3 HOH 15 137 137 HOH HOH A . E 3 HOH 16 138 138 HOH HOH A . E 3 HOH 17 140 140 HOH HOH A . E 3 HOH 18 144 144 HOH HOH A . E 3 HOH 19 145 145 HOH HOH A . E 3 HOH 20 146 146 HOH HOH A . E 3 HOH 21 147 147 HOH HOH A . E 3 HOH 22 150 150 HOH HOH A . E 3 HOH 23 153 153 HOH HOH A . E 3 HOH 24 154 154 HOH HOH A . E 3 HOH 25 156 156 HOH HOH A . E 3 HOH 26 157 157 HOH HOH A . E 3 HOH 27 158 158 HOH HOH A . E 3 HOH 28 159 159 HOH HOH A . E 3 HOH 29 160 160 HOH HOH A . E 3 HOH 30 161 161 HOH HOH A . E 3 HOH 31 163 163 HOH HOH A . E 3 HOH 32 165 165 HOH HOH A . E 3 HOH 33 167 167 HOH HOH A . E 3 HOH 34 173 173 HOH HOH A . E 3 HOH 35 174 174 HOH HOH A . E 3 HOH 36 176 176 HOH HOH A . F 3 HOH 1 101 101 HOH HOH B . F 3 HOH 2 102 102 HOH HOH B . F 3 HOH 3 103 103 HOH HOH B . F 3 HOH 4 105 105 HOH HOH B . F 3 HOH 5 108 108 HOH HOH B . F 3 HOH 6 109 109 HOH HOH B . F 3 HOH 7 110 110 HOH HOH B . F 3 HOH 8 111 111 HOH HOH B . F 3 HOH 9 112 112 HOH HOH B . F 3 HOH 10 113 113 HOH HOH B . F 3 HOH 11 114 114 HOH HOH B . F 3 HOH 12 116 116 HOH HOH B . F 3 HOH 13 117 117 HOH HOH B . F 3 HOH 14 122 122 HOH HOH B . F 3 HOH 15 123 123 HOH HOH B . F 3 HOH 16 125 125 HOH HOH B . F 3 HOH 17 126 126 HOH HOH B . F 3 HOH 18 127 127 HOH HOH B . F 3 HOH 19 132 132 HOH HOH B . F 3 HOH 20 133 133 HOH HOH B . F 3 HOH 21 135 135 HOH HOH B . F 3 HOH 22 136 136 HOH HOH B . F 3 HOH 23 139 139 HOH HOH B . F 3 HOH 24 141 141 HOH HOH B . F 3 HOH 25 142 142 HOH HOH B . F 3 HOH 26 143 143 HOH HOH B . F 3 HOH 27 148 148 HOH HOH B . F 3 HOH 28 149 149 HOH HOH B . F 3 HOH 29 151 151 HOH HOH B . F 3 HOH 30 152 152 HOH HOH B . F 3 HOH 31 155 155 HOH HOH B . F 3 HOH 32 162 162 HOH HOH B . F 3 HOH 33 164 164 HOH HOH B . F 3 HOH 34 166 166 HOH HOH B . F 3 HOH 35 168 168 HOH HOH B . F 3 HOH 36 169 169 HOH HOH B . F 3 HOH 37 170 170 HOH HOH B . F 3 HOH 38 171 171 HOH HOH B . F 3 HOH 39 172 172 HOH HOH B . F 3 HOH 40 175 175 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-08 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-08 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 A U 2 ? A U 2 3 1 Y 1 B U 24 ? B U 1 4 1 Y 1 B U 25 ? B U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 TOY C11 C N R 114 TOY O11 O N N 115 TOY C21 C N R 116 TOY N21 N N N 117 TOY C31 C N N 118 TOY C41 C N S 119 TOY O41 O N N 120 TOY C51 C N R 121 TOY O51 O N N 122 TOY C61 C N N 123 TOY N61 N N N 124 TOY C12 C N R 125 TOY N12 N N N 126 TOY C22 C N N 127 TOY C32 C N S 128 TOY N32 N N N 129 TOY C42 C N R 130 TOY C52 C N S 131 TOY O52 O N N 132 TOY C62 C N S 133 TOY O62 O N N 134 TOY C13 C N S 135 TOY C23 C N R 136 TOY O23 O N N 137 TOY C33 C N S 138 TOY N33 N N N 139 TOY C43 C N S 140 TOY O43 O N N 141 TOY C53 C N R 142 TOY O53 O N N 143 TOY C63 C N N 144 TOY O63 O N N 145 TOY H11 H N N 146 TOY H21 H N N 147 TOY HN21 H N N 148 TOY HN22 H N N 149 TOY H311 H N N 150 TOY H312 H N N 151 TOY H41 H N N 152 TOY H41O H N N 153 TOY H51 H N N 154 TOY H611 H N N 155 TOY H612 H N N 156 TOY HN61 H N N 157 TOY HN62 H N N 158 TOY H12 H N N 159 TOY HN11 H N N 160 TOY HN12 H N N 161 TOY H221 H N N 162 TOY H222 H N N 163 TOY H32 H N N 164 TOY HN1 H N N 165 TOY HN2 H N N 166 TOY H42 H N N 167 TOY H52 H N N 168 TOY H52O H N N 169 TOY H62 H N N 170 TOY H13 H N N 171 TOY H23 H N N 172 TOY H23O H N N 173 TOY H33 H N N 174 TOY HN31 H N N 175 TOY HN32 H N N 176 TOY H43 H N N 177 TOY H43O H N N 178 TOY H53 H N N 179 TOY H631 H N N 180 TOY H632 H N N 181 TOY H63O H N N 182 U OP3 O N N 183 U P P N N 184 U OP1 O N N 185 U OP2 O N N 186 U "O5'" O N N 187 U "C5'" C N N 188 U "C4'" C N R 189 U "O4'" O N N 190 U "C3'" C N S 191 U "O3'" O N N 192 U "C2'" C N R 193 U "O2'" O N N 194 U "C1'" C N R 195 U N1 N N N 196 U C2 C N N 197 U O2 O N N 198 U N3 N N N 199 U C4 C N N 200 U O4 O N N 201 U C5 C N N 202 U C6 C N N 203 U HOP3 H N N 204 U HOP2 H N N 205 U "H5'" H N N 206 U "H5''" H N N 207 U "H4'" H N N 208 U "H3'" H N N 209 U "HO3'" H N N 210 U "H2'" H N N 211 U "HO2'" H N N 212 U "H1'" H N N 213 U H3 H N N 214 U H5 H N N 215 U H6 H N N 216 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 TOY C11 O11 sing N N 118 TOY C11 C21 sing N N 119 TOY C11 O51 sing N N 120 TOY C11 H11 sing N N 121 TOY O11 C42 sing N N 122 TOY C21 N21 sing N N 123 TOY C21 C31 sing N N 124 TOY C21 H21 sing N N 125 TOY N21 HN21 sing N N 126 TOY N21 HN22 sing N N 127 TOY C31 C41 sing N N 128 TOY C31 H311 sing N N 129 TOY C31 H312 sing N N 130 TOY C41 O41 sing N N 131 TOY C41 C51 sing N N 132 TOY C41 H41 sing N N 133 TOY O41 H41O sing N N 134 TOY C51 O51 sing N N 135 TOY C51 C61 sing N N 136 TOY C51 H51 sing N N 137 TOY C61 N61 sing N N 138 TOY C61 H611 sing N N 139 TOY C61 H612 sing N N 140 TOY N61 HN61 sing N N 141 TOY N61 HN62 sing N N 142 TOY C12 N12 sing N N 143 TOY C12 C22 sing N N 144 TOY C12 C62 sing N N 145 TOY C12 H12 sing N N 146 TOY N12 HN11 sing N N 147 TOY N12 HN12 sing N N 148 TOY C22 C32 sing N N 149 TOY C22 H221 sing N N 150 TOY C22 H222 sing N N 151 TOY C32 N32 sing N N 152 TOY C32 C42 sing N N 153 TOY C32 H32 sing N N 154 TOY N32 HN1 sing N N 155 TOY N32 HN2 sing N N 156 TOY C42 C52 sing N N 157 TOY C42 H42 sing N N 158 TOY C52 O52 sing N N 159 TOY C52 C62 sing N N 160 TOY C52 H52 sing N N 161 TOY O52 H52O sing N N 162 TOY C62 O62 sing N N 163 TOY C62 H62 sing N N 164 TOY O62 C13 sing N N 165 TOY C13 C23 sing N N 166 TOY C13 O53 sing N N 167 TOY C13 H13 sing N N 168 TOY C23 O23 sing N N 169 TOY C23 C33 sing N N 170 TOY C23 H23 sing N N 171 TOY O23 H23O sing N N 172 TOY C33 N33 sing N N 173 TOY C33 C43 sing N N 174 TOY C33 H33 sing N N 175 TOY N33 HN31 sing N N 176 TOY N33 HN32 sing N N 177 TOY C43 O43 sing N N 178 TOY C43 C53 sing N N 179 TOY C43 H43 sing N N 180 TOY O43 H43O sing N N 181 TOY C53 O53 sing N N 182 TOY C53 C63 sing N N 183 TOY C53 H53 sing N N 184 TOY C63 O63 sing N N 185 TOY C63 H631 sing N N 186 TOY C63 H632 sing N N 187 TOY O63 H63O sing N N 188 U OP3 P sing N N 189 U OP3 HOP3 sing N N 190 U P OP1 doub N N 191 U P OP2 sing N N 192 U P "O5'" sing N N 193 U OP2 HOP2 sing N N 194 U "O5'" "C5'" sing N N 195 U "C5'" "C4'" sing N N 196 U "C5'" "H5'" sing N N 197 U "C5'" "H5''" sing N N 198 U "C4'" "O4'" sing N N 199 U "C4'" "C3'" sing N N 200 U "C4'" "H4'" sing N N 201 U "O4'" "C1'" sing N N 202 U "C3'" "O3'" sing N N 203 U "C3'" "C2'" sing N N 204 U "C3'" "H3'" sing N N 205 U "O3'" "HO3'" sing N N 206 U "C2'" "O2'" sing N N 207 U "C2'" "C1'" sing N N 208 U "C2'" "H2'" sing N N 209 U "O2'" "HO2'" sing N N 210 U "C1'" N1 sing N N 211 U "C1'" "H1'" sing N N 212 U N1 C2 sing N N 213 U N1 C6 sing N N 214 U C2 O2 doub N N 215 U C2 N3 sing N N 216 U N3 C4 sing N N 217 U N3 H3 sing N N 218 U C4 O4 doub N N 219 U C4 C5 sing N N 220 U C5 C6 doub N N 221 U C5 H5 sing N N 222 U C6 H6 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LC4 'double helix' 1LC4 'a-form double helix' 1LC4 'mismatched base pair' 1LC4 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.672 -0.298 -0.056 3.120 -1.807 2.487 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.327 -0.109 0.210 4.840 -14.010 -1.762 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.624 -0.347 -0.061 -1.489 -4.856 2.152 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.721 -1.220 -0.381 9.153 -9.550 -26.572 4 A_U6:U43_B A 6 ? B 43 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.097 -0.352 -0.094 0.459 -2.526 3.035 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.322 -0.122 -0.176 9.191 -22.489 0.709 6 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A A 10 1_555 B U 15 1_555 -0.033 -0.208 0.084 4.572 -18.460 -1.672 7 A_A10:U38_B A 10 ? B 38 ? 20 1 1 A C 11 1_555 B G 14 1_555 0.216 -0.471 0.156 2.498 -17.926 -0.487 8 A_C11:G37_B A 11 ? B 37 ? 19 1 1 A C 12 1_555 B G 13 1_555 -0.067 -0.248 0.359 -1.177 -7.211 1.505 9 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.466 -0.162 0.021 -4.569 -13.219 -3.300 10 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.039 -0.016 0.284 -5.198 -17.584 0.507 11 A_G14:C34_B A 14 ? B 34 ? 19 1 1 A U 15 1_555 B A 10 1_555 0.198 -0.092 0.404 -1.716 -13.800 3.146 12 A_U15:A33_B A 15 ? B 33 ? 20 1 1 A G 16 1_555 B C 9 1_555 -0.431 -0.328 0.132 -4.878 -22.056 3.452 13 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A G 19 1_555 B C 7 1_555 -0.345 -0.423 -0.115 6.646 2.228 -3.855 14 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 1.960 -1.632 -0.181 -4.173 -5.588 -26.676 15 A_U20:U29_B A 20 ? B 29 ? ? ? 1 A C 21 1_555 B G 5 1_555 0.520 -0.541 -0.100 1.213 -0.717 0.346 16 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.402 -0.315 0.210 -1.396 -7.529 1.469 17 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.706 -0.574 0.212 -0.787 -4.257 -0.318 18 A_C23:G26_B A 23 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.386 -1.812 3.267 -2.085 -0.123 37.129 -2.825 0.328 3.289 -0.193 3.270 37.186 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 0.183 -1.912 3.290 2.257 8.678 24.606 -6.370 0.155 2.488 19.553 -5.085 26.165 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.741 -2.114 3.067 1.610 2.447 20.402 -6.866 2.701 2.730 6.863 -4.515 20.609 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 2.135 -2.246 3.607 -1.625 2.441 42.488 -3.357 -3.116 3.399 3.364 2.239 42.584 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A C 9 1_555 B G 16 1_555 1.191 -3.231 6.364 -7.344 14.154 81.410 -3.097 -1.239 5.740 10.759 5.583 82.689 5 AA_C7C9:G39G42_BB A 7 ? B 42 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A A 10 1_555 B U 15 1_555 -0.565 -1.507 3.321 -4.114 14.823 29.543 -4.931 0.350 2.372 26.893 7.464 33.229 6 AA_C9A10:U38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A A 10 1_555 B U 15 1_555 A C 11 1_555 B G 14 1_555 0.895 -1.909 3.172 1.535 2.516 33.315 -3.715 -1.313 3.061 4.377 -2.671 33.441 7 AA_A10C11:G37U38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 -0.724 -2.098 3.280 -3.794 5.496 29.447 -5.103 0.650 2.917 10.640 7.345 30.179 8 AA_C11C12:G36G37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.202 -1.636 3.152 0.730 10.669 29.518 -4.794 0.495 2.423 20.126 -1.377 31.355 9 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 0.350 -1.688 3.118 -1.594 4.635 32.873 -3.662 -0.856 2.840 8.134 2.797 33.227 10 AA_G13G14:C34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A G 14 1_555 B C 11 1_555 A U 15 1_555 B A 10 1_555 0.367 -1.321 3.122 0.430 -0.444 31.505 -2.353 -0.599 3.145 -0.818 -0.793 31.511 11 AA_G14U15:A33C34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A U 15 1_555 B A 10 1_555 A G 16 1_555 B C 9 1_555 0.136 -1.475 3.091 4.556 10.801 33.829 -3.778 0.359 2.514 17.907 -7.553 35.746 12 AA_U15G16:C32A33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.388 -3.695 6.032 10.029 20.304 77.740 -3.774 1.526 4.931 15.866 -7.837 80.467 13 AA_G16G19:C30C32_BB A 16 ? B 32 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -2.027 -2.416 3.644 -1.022 2.651 43.026 -3.575 2.647 3.541 3.609 1.392 43.115 14 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.635 -2.592 3.087 -0.108 2.512 23.776 -6.994 -1.564 2.800 6.074 0.260 23.907 15 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 0.042 -1.727 3.149 -0.971 8.682 29.110 -4.848 -0.254 2.537 16.802 1.880 30.365 16 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.307 -2.230 3.308 0.038 -1.287 29.747 -4.064 -0.590 3.399 -2.506 -0.073 29.775 17 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 TOBRAMYCIN TOY 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J7T _pdbx_initial_refinement_model.details 'PDB ENTRY 1J7T' #