data_1LCC # _entry.id 1LCC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1LCC pdb_00001lcc 10.2210/pdb1lcc/pdb WWPDB D_1000174651 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1LCD _pdbx_database_related.details 'ENSEMBLE OF 3 STRUCTURES' _pdbx_database_related.content_type ensemble # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LCC _pdbx_database_status.recvd_initial_deposition_date 1993-03-25 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chuprina, V.P.' 1 'Rullmann, J.A.C.' 2 'Lamerichs, R.M.J.N.' 3 'Van Boom, J.H.' 4 'Boelens, R.' 5 'Kaptein, R.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics. ; J.Mol.Biol. 234 446 462 1993 JMOBAK UK 0022-2836 0070 ? 8230225 10.1006/jmbi.1993.1598 1 ;Assignment of the 1H-NMR Spectrum of a Lac Repressor Headpiece-Operator Complex in H2O and Identification of Noes. Consequences for Protein-DNA Interaction ; Eur.J.Biochem. 194 629 ? 1990 EJBCAI IX 0014-2956 0262 ? ? ? 2 'Two-Dimensional NMR Study of a Protein-DNA Complex. Lac Repressor Headpiece-Operator Interaction' Biochem.Pharm. 40 89 ? 1990 BCPCA6 UK 0006-2952 0725 ? ? ? 3 '1H NMR Study of a Complex between the Lac Repressor Headpiece and a 22 Base Pair Symmetric Lac Operator' Biochemistry 28 2985 ? 1989 BICHAW US 0006-2960 0033 ? ? ? 4 'NMR Based Docking Studies of Lac Repressor Headpiece on a Lac Operator Fragment' 'Ucla Symp.Mol.Cell.Biol., New Ser.' 95 11 ? 1989 USMBD6 US 0735-9543 2001 ? ? ? 5 'The Interaction of Lac Repressor Headpiece with its Operator: An NMR View' 'Protein Seq.Data Anal.' 1 487 ? 1988 PSDAE6 GW 0931-9506 0816 ? ? ? 6 ;Combined Procedure of Distance Geometry and Restrained Molecular Dynamics Techniques for Protein Structure Determination from Nuclear Magnetic Resonance Data: Application to the DNA Binding Domain of Lac Repressor from Escherichia Coli ; Proteins 3 209 ? 1988 PSFGEY US 0887-3585 0867 ? ? ? 7 'A Two-Dimensional NMR Study of the Complex of Lac Repressor Headpiece with a 14 Base Pair Lac Operator Fragment' 'Nato Asi Ser.,Ser.A' 137 191 ? 1987 NALSDJ US 0161-0449 2002 ? ? ? 8 'Complex of Lac Repressor Headpiece with a 14 Base Pair Lac Operator Fragment Studied by Two-Dimensional Nuclear Magnetic Resonance' J.Mol.Biol. 193 213 ? 1987 JMOBAK UK 0022-2836 0070 ? ? ? 9 ;Restrained Molecular Dynamics Procedure for Protein Tertiary Structure Determination from NMR Data: A Lac Repressor Headpiece Structure Based on Information on J-Coupling and from Presence and Absence of Noes ; Isr.J.Chem. 27 181 ? 1986 ISJCAT IS 0021-2148 0204 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chuprina, V.P.' 1 ? primary 'Rullmann, J.A.' 2 ? primary 'Lamerichs, R.M.' 3 ? primary 'van Boom, J.H.' 4 ? primary 'Boelens, R.' 5 ? primary 'Kaptein, R.' 6 ? 1 'Lamerichs, R.M.J.N.' 7 ? 1 'Boelens, R.' 8 ? 1 'Van Der Marel, G.A.' 9 ? 1 'Van Boom, J.H.' 10 ? 1 'Kaptein, R.' 11 ? 2 'Kaptein, R.' 12 ? 2 'Lamerichs, R.M.J.N.' 13 ? 2 'Boelens, R.' 14 ? 2 'Rullmann, J.A.C.' 15 ? 3 'Lamerichs, R.M.J.N.' 16 ? 3 'Boelens, R.' 17 ? 3 'Van Der Marel, G.A.' 18 ? 3 'Van Boom, J.H.' 19 ? 3 'Kaptein, R.' 20 ? 3 'Buck, F.' 21 ? 3 'Fera, B.' 22 ? 3 'Rueterjans, H.' 23 ? 4 'Rullmann, J.A.C.' 24 ? 4 'Boelens, R.' 25 ? 4 'Kaptein, R.' 26 ? 5 'Boelens, R.' 27 ? 5 'Lamerichs, R.M.J.N.' 28 ? 5 'Rullmann, J.A.C.' 29 ? 5 'Van Boom, J.H.' 30 ? 5 'Kaptein, R.' 31 ? 6 'De Vlieg, J.' 32 ? 6 'Scheek, R.M.' 33 ? 6 'Van Gunsteren, W.F.' 34 ? 6 'Berendsen, H.J.C.' 35 ? 6 'Kaptein, R.' 36 ? 6 'Thomason, J.' 37 ? 7 'Boelens, R.' 38 ? 7 'Scheek, R.M.' 39 ? 7 'Lamerichs, R.M.J.N.' 40 ? 7 'De Vlieg, J.' 41 ? 7 'Van Boom, J.H.' 42 ? 7 'Kaptein, R.' 43 ? 8 'Boelens, R.' 44 ? 8 'Scheek, R.M.' 45 ? 8 'Van Boom, J.H.' 46 ? 8 'Kaptein, R.' 47 ? 9 'De Vlieg, J.' 48 ? 9 'Boelens, R.' 49 ? 9 'Scheek, R.M.' 50 ? 9 'Kaptein, R.' 51 ? 9 'Van Gunsteren, W.F.' 52 ? # _cell.entry_id 1LCC _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCC _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3') ; 3413.246 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3') ; 3293.174 1 ? ? ? ? 3 polymer man 'Lac Repressor' 5693.446 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 53 ? ? ? ? # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'DEOXYRIBONUCLEIC ACID' 2 'DEOXYRIBONUCLEIC ACID' 3 POLYPEPTIDE # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DT)(DG)(DT)(DG)(DA)(DG)(DC)(DG)' AATTGTGAGCG B ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DT)(DC)(DA)(DC)(DA)(DA)(DT)(DT)' CGCTCACAATT C ? 3 'polypeptide(L)' no no MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNR MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNR A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DT n 1 7 DG n 1 8 DA n 1 9 DG n 1 10 DC n 1 11 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DT n 3 1 MET n 3 2 LYS n 3 3 PRO n 3 4 VAL n 3 5 THR n 3 6 LEU n 3 7 TYR n 3 8 ASP n 3 9 VAL n 3 10 ALA n 3 11 GLU n 3 12 TYR n 3 13 ALA n 3 14 GLY n 3 15 VAL n 3 16 SER n 3 17 TYR n 3 18 GLN n 3 19 THR n 3 20 VAL n 3 21 SER n 3 22 ARG n 3 23 VAL n 3 24 VAL n 3 25 ASN n 3 26 GLN n 3 27 ALA n 3 28 SER n 3 29 HIS n 3 30 VAL n 3 31 SER n 3 32 ALA n 3 33 LYS n 3 34 THR n 3 35 ARG n 3 36 GLU n 3 37 LYS n 3 38 VAL n 3 39 GLU n 3 40 ALA n 3 41 ALA n 3 42 MET n 3 43 ALA n 3 44 GLU n 3 45 LEU n 3 46 ASN n 3 47 TYR n 3 48 ILE n 3 49 PRO n 3 50 ASN n 3 51 ARG n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'BMH 74-12' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type LAC _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP LACI_ECOLI P03023 3 1 ? ? 2 PDB 1LCC 1LCC 1 ? ? ? 3 PDB 1LCC 1LCC 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1LCC A 1 ? 51 ? P03023 1 ? 51 ? 1 51 2 2 1LCC B 1 ? 11 ? 1LCC 1 ? 11 ? 1 11 3 3 1LCC C 1 ? 11 ? 1LCC 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_details.entry_id 1LCC _pdbx_nmr_details.text ;THE AVERAGE PAIRWISE RMSD BETWEEN THE FOUR STRUCTURES (EXCLUDING WATER AND IONS) IS 0.9 ANGSTROMS ON BACKBONE ATOMS (EXCLUDING FIRST AND LAST THREE PROTEIN RESIDUES, AND THE FIRST AND LAST BASE PAIR) AND 1.4 ANGSTROMS ON ALL ATOMS. THE DATA SETS INCLUDE THOSE WATERS AND IONS FOR WHICH THE DISTANCES TO THE NEAREST NEIGHBOR ATOM IN PROTEIN AS WELL AS IN DNA DO NOT EXCEED 4 ANGSTROMS. ; # _pdbx_nmr_ensemble.entry_id 1LCC _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name GROMOS _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors ? _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1LCC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1LCC _struct.title ;STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LCC _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'DNA, HALF-OPERATOR, LAC OPERATOR, LAC REPRESSOR, HEADPIECE, GENE REGULATION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 5 ? GLY C 14 ? THR A 5 GLY A 14 1 ? 10 HELX_P HELX_P2 2 SER C 16 ? ASN C 25 ? SER A 16 ASN A 25 1 ? 10 HELX_P HELX_P3 3 SER C 31 ? LEU C 45 ? SER A 31 LEU A 45 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DT 4 OP1 ? ? ? 1_555 D NA . NA ? ? C DT 4 C NA 12 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? C NA 12 C HOH 319 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? C NA 12 A HOH 58 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? C NA 12 A HOH 60 1_555 ? ? ? ? ? ? ? 2.131 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 1 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 1 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 2 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 2 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 3 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 3 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 4 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 4 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 5 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 5 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 5 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 6 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 6 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 7 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 7 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 7 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 9 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 9 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 9 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 10 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 10 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 10 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 11 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 11 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 11 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 12 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE NA C 12' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 VAL C 24 ? VAL A 24 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 58 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 60 . ? 1_555 ? 4 AC1 6 DC B 3 ? DC C 3 . ? 1_555 ? 5 AC1 6 DT B 4 ? DT C 4 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH C 319 . ? 1_555 ? # _database_PDB_matrix.entry_id 1LCC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LCC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A B . n A 1 2 DA 2 2 2 DA A B . n A 1 3 DT 3 3 3 DT T B . n A 1 4 DT 4 4 4 DT T B . n A 1 5 DG 5 5 5 DG G B . n A 1 6 DT 6 6 6 DT T B . n A 1 7 DG 7 7 7 DG G B . n A 1 8 DA 8 8 8 DA A B . n A 1 9 DG 9 9 9 DG G B . n A 1 10 DC 10 10 10 DC C B . n A 1 11 DG 11 11 11 DG G B . n B 2 1 DC 1 1 1 DC C C . n B 2 2 DG 2 2 2 DG G C . n B 2 3 DC 3 3 3 DC C C . n B 2 4 DT 4 4 4 DT T C . n B 2 5 DC 5 5 5 DC C C . n B 2 6 DA 6 6 6 DA A C . n B 2 7 DC 7 7 7 DC C C . n B 2 8 DA 8 8 8 DA A C . n B 2 9 DA 9 9 9 DA A C . n B 2 10 DT 10 10 10 DT T C . n B 2 11 DT 11 11 11 DT T C . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 LYS 2 2 2 LYS LYS A . n C 3 3 PRO 3 3 3 PRO PRO A . n C 3 4 VAL 4 4 4 VAL VAL A . n C 3 5 THR 5 5 5 THR THR A . n C 3 6 LEU 6 6 6 LEU LEU A . n C 3 7 TYR 7 7 7 TYR TYR A . n C 3 8 ASP 8 8 8 ASP ASP A . n C 3 9 VAL 9 9 9 VAL VAL A . n C 3 10 ALA 10 10 10 ALA ALA A . n C 3 11 GLU 11 11 11 GLU GLU A . n C 3 12 TYR 12 12 12 TYR TYR A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLY 14 14 14 GLY GLY A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 SER 16 16 16 SER SER A . n C 3 17 TYR 17 17 17 TYR TYR A . n C 3 18 GLN 18 18 18 GLN GLN A . n C 3 19 THR 19 19 19 THR THR A . n C 3 20 VAL 20 20 20 VAL VAL A . n C 3 21 SER 21 21 21 SER SER A . n C 3 22 ARG 22 22 22 ARG ARG A . n C 3 23 VAL 23 23 23 VAL VAL A . n C 3 24 VAL 24 24 24 VAL VAL A . n C 3 25 ASN 25 25 25 ASN ASN A . n C 3 26 GLN 26 26 26 GLN GLN A . n C 3 27 ALA 27 27 27 ALA ALA A . n C 3 28 SER 28 28 28 SER SER A . n C 3 29 HIS 29 29 29 HIS HIS A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 SER 31 31 31 SER SER A . n C 3 32 ALA 32 32 32 ALA ALA A . n C 3 33 LYS 33 33 33 LYS LYS A . n C 3 34 THR 34 34 34 THR THR A . n C 3 35 ARG 35 35 35 ARG ARG A . n C 3 36 GLU 36 36 36 GLU GLU A . n C 3 37 LYS 37 37 37 LYS LYS A . n C 3 38 VAL 38 38 38 VAL VAL A . n C 3 39 GLU 39 39 39 GLU GLU A . n C 3 40 ALA 40 40 40 ALA ALA A . n C 3 41 ALA 41 41 41 ALA ALA A . n C 3 42 MET 42 42 42 MET MET A . n C 3 43 ALA 43 43 43 ALA ALA A . n C 3 44 GLU 44 44 44 GLU GLU A . n C 3 45 LEU 45 45 45 LEU LEU A . n C 3 46 ASN 46 46 46 ASN ASN A . n C 3 47 TYR 47 47 47 TYR TYR A . n C 3 48 ILE 48 48 48 ILE ILE A . n C 3 49 PRO 49 49 49 PRO PRO A . n C 3 50 ASN 50 50 50 ASN ASN A . n C 3 51 ARG 51 51 51 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 12 1 NA NA C . E 5 HOH 1 327 327 HOH HOH B . E 5 HOH 2 1026 1026 HOH HOH B . E 5 HOH 3 1069 1069 HOH HOH B . E 5 HOH 4 1143 1143 HOH HOH B . E 5 HOH 5 1581 1581 HOH HOH B . E 5 HOH 6 1795 1795 HOH HOH B . E 5 HOH 7 1836 1836 HOH HOH B . E 5 HOH 8 2478 2478 HOH HOH B . E 5 HOH 9 2496 2496 HOH HOH B . E 5 HOH 10 2639 2639 HOH HOH B . E 5 HOH 11 3063 3063 HOH HOH B . E 5 HOH 12 3289 3289 HOH HOH B . F 5 HOH 1 47 47 HOH HOH C . F 5 HOH 2 319 319 HOH HOH C . F 5 HOH 3 328 328 HOH HOH C . F 5 HOH 4 337 337 HOH HOH C . F 5 HOH 5 827 827 HOH HOH C . F 5 HOH 6 902 902 HOH HOH C . F 5 HOH 7 1002 1002 HOH HOH C . F 5 HOH 8 1046 1046 HOH HOH C . F 5 HOH 9 1691 1691 HOH HOH C . F 5 HOH 10 1845 1845 HOH HOH C . F 5 HOH 11 1967 1967 HOH HOH C . F 5 HOH 12 2471 2471 HOH HOH C . F 5 HOH 13 2538 2538 HOH HOH C . F 5 HOH 14 2570 2570 HOH HOH C . G 5 HOH 1 52 24 HOH HOH A . G 5 HOH 2 53 317 HOH HOH A . G 5 HOH 3 54 497 HOH HOH A . G 5 HOH 4 55 580 HOH HOH A . G 5 HOH 5 56 835 HOH HOH A . G 5 HOH 6 57 856 HOH HOH A . G 5 HOH 7 58 895 HOH HOH A . G 5 HOH 8 59 913 HOH HOH A . G 5 HOH 9 60 923 HOH HOH A . G 5 HOH 10 61 1001 HOH HOH A . G 5 HOH 11 62 1358 HOH HOH A . G 5 HOH 12 63 1417 HOH HOH A . G 5 HOH 13 64 1419 HOH HOH A . G 5 HOH 14 65 1826 HOH HOH A . G 5 HOH 15 66 1876 HOH HOH A . G 5 HOH 16 67 1939 HOH HOH A . G 5 HOH 17 68 1958 HOH HOH A . G 5 HOH 18 69 1961 HOH HOH A . G 5 HOH 19 70 1993 HOH HOH A . G 5 HOH 20 71 2171 HOH HOH A . G 5 HOH 21 72 2225 HOH HOH A . G 5 HOH 22 73 2319 HOH HOH A . G 5 HOH 23 74 2484 HOH HOH A . G 5 HOH 24 75 2488 HOH HOH A . G 5 HOH 25 76 2497 HOH HOH A . G 5 HOH 26 77 2542 HOH HOH A . G 5 HOH 27 78 3293 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DT 4 ? C DT 4 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? F HOH . ? C HOH 319 ? 1_555 85.6 ? 2 OP1 ? B DT 4 ? C DT 4 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? G HOH . ? A HOH 58 ? 1_555 94.6 ? 3 O ? F HOH . ? C HOH 319 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? G HOH . ? A HOH 58 ? 1_555 98.3 ? 4 OP1 ? B DT 4 ? C DT 4 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? G HOH . ? A HOH 60 ? 1_555 88.9 ? 5 O ? F HOH . ? C HOH 319 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? G HOH . ? A HOH 60 ? 1_555 168.2 ? 6 O ? G HOH . ? A HOH 58 ? 1_555 NA ? D NA . ? C NA 12 ? 1_555 O ? G HOH . ? A HOH 60 ? 1_555 92.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_nmr_ensemble_rms.entry_id 1LCC _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.atom_type 'all atoms' _pdbx_nmr_ensemble_rms.distance_rms_dev 1.4 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG1 A THR 34 ? ? O A HOH 59 ? ? 1.40 2 1 HG A SER 16 ? ? O A HOH 75 ? ? 1.47 3 1 HG A SER 31 ? ? O A HOH 62 ? ? 1.49 4 1 HE2 A HIS 29 ? ? O A HOH 65 ? ? 1.54 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DA 1 ? ? N7 B DA 1 ? ? 1.331 1.388 -0.057 0.006 N 2 1 C8 B DA 1 ? ? N9 B DA 1 ? ? 1.319 1.373 -0.054 0.008 N 3 1 N9 B DA 1 ? ? C4 B DA 1 ? ? 1.321 1.374 -0.053 0.006 N 4 1 C5 B DA 2 ? ? N7 B DA 2 ? ? 1.338 1.388 -0.050 0.006 N 5 1 N9 B DA 2 ? ? C4 B DA 2 ? ? 1.318 1.374 -0.056 0.006 N 6 1 C4 B DT 3 ? ? C5 B DT 3 ? ? 1.390 1.445 -0.055 0.009 N 7 1 C5 B DT 3 ? ? C6 B DT 3 ? ? 1.398 1.339 0.059 0.007 N 8 1 C6 B DT 3 ? ? N1 B DT 3 ? ? 1.421 1.378 0.043 0.007 N 9 1 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 10 1 C5 B DT 4 ? ? C6 B DT 4 ? ? 1.395 1.339 0.056 0.007 N 11 1 C5 B DG 5 ? ? N7 B DG 5 ? ? 1.327 1.388 -0.061 0.006 N 12 1 C8 B DG 5 ? ? N9 B DG 5 ? ? 1.327 1.374 -0.047 0.007 N 13 1 C5 B DT 6 ? ? C6 B DT 6 ? ? 1.396 1.339 0.057 0.007 N 14 1 C5 B DG 7 ? ? N7 B DG 7 ? ? 1.334 1.388 -0.054 0.006 N 15 1 C5 B DA 8 ? ? N7 B DA 8 ? ? 1.338 1.388 -0.050 0.006 N 16 1 C8 B DA 8 ? ? N9 B DA 8 ? ? 1.316 1.373 -0.057 0.008 N 17 1 N9 B DA 8 ? ? C4 B DA 8 ? ? 1.329 1.374 -0.045 0.006 N 18 1 C5 B DG 9 ? ? N7 B DG 9 ? ? 1.325 1.388 -0.063 0.006 N 19 1 C8 B DG 9 ? ? N9 B DG 9 ? ? 1.332 1.374 -0.042 0.007 N 20 1 N9 B DG 9 ? ? C4 B DG 9 ? ? 1.324 1.375 -0.051 0.008 N 21 1 C5 B DC 10 ? ? C6 B DC 10 ? ? 1.397 1.339 0.058 0.008 N 22 1 C5 B DG 11 ? ? N7 B DG 11 ? ? 1.334 1.388 -0.054 0.006 N 23 1 C8 B DG 11 ? ? N9 B DG 11 ? ? 1.319 1.374 -0.055 0.007 N 24 1 N9 B DG 11 ? ? C4 B DG 11 ? ? 1.326 1.375 -0.049 0.008 N 25 1 N1 C DC 1 ? ? C6 C DC 1 ? ? 1.410 1.367 0.043 0.006 N 26 1 C5 C DG 2 ? ? N7 C DG 2 ? ? 1.336 1.388 -0.052 0.006 N 27 1 C5 C DT 4 ? ? C6 C DT 4 ? ? 1.395 1.339 0.056 0.007 N 28 1 N1 C DC 5 ? ? C6 C DC 5 ? ? 1.405 1.367 0.038 0.006 N 29 1 C5 C DC 5 ? ? C6 C DC 5 ? ? 1.393 1.339 0.054 0.008 N 30 1 C5 C DA 6 ? ? N7 C DA 6 ? ? 1.328 1.388 -0.060 0.006 N 31 1 C8 C DA 6 ? ? N9 C DA 6 ? ? 1.321 1.373 -0.052 0.008 N 32 1 N9 C DA 6 ? ? C4 C DA 6 ? ? 1.326 1.374 -0.048 0.006 N 33 1 C5 C DA 8 ? ? N7 C DA 8 ? ? 1.337 1.388 -0.051 0.006 N 34 1 C8 C DA 8 ? ? N9 C DA 8 ? ? 1.321 1.373 -0.052 0.008 N 35 1 N9 C DA 8 ? ? C4 C DA 8 ? ? 1.324 1.374 -0.050 0.006 N 36 1 C5 C DA 9 ? ? N7 C DA 9 ? ? 1.333 1.388 -0.055 0.006 N 37 1 N9 C DA 9 ? ? C4 C DA 9 ? ? 1.335 1.374 -0.039 0.006 N 38 1 C5 C DT 10 ? ? C6 C DT 10 ? ? 1.395 1.339 0.056 0.007 N 39 1 C5 C DT 11 ? ? C6 C DT 11 ? ? 1.384 1.339 0.045 0.007 N 40 1 C5 C DT 11 ? ? C7 C DT 11 ? ? 1.538 1.496 0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" B DA 1 ? ? "O4'" B DA 1 ? ? "C4'" B DA 1 ? ? 103.13 110.10 -6.97 1.00 N 2 1 N1 B DA 1 ? ? C2 B DA 1 ? ? N3 B DA 1 ? ? 120.01 129.30 -9.29 0.50 N 3 1 C2 B DA 1 ? ? N3 B DA 1 ? ? C4 B DA 1 ? ? 122.14 110.60 11.54 0.50 N 4 1 N3 B DA 1 ? ? C4 B DA 1 ? ? C5 B DA 1 ? ? 119.63 126.80 -7.17 0.70 N 5 1 C4 B DA 1 ? ? C5 B DA 1 ? ? N7 B DA 1 ? ? 107.64 110.70 -3.06 0.50 N 6 1 N7 B DA 1 ? ? C8 B DA 1 ? ? N9 B DA 1 ? ? 110.36 113.80 -3.44 0.50 N 7 1 C8 B DA 1 ? ? N9 B DA 1 ? ? C4 B DA 1 ? ? 108.63 105.80 2.83 0.40 N 8 1 N3 B DA 1 ? ? C4 B DA 1 ? ? N9 B DA 1 ? ? 133.54 127.40 6.14 0.80 N 9 1 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? N9 B DA 2 ? ? 103.38 108.00 -4.62 0.70 N 10 1 N1 B DA 2 ? ? C2 B DA 2 ? ? N3 B DA 2 ? ? 119.41 129.30 -9.89 0.50 N 11 1 C2 B DA 2 ? ? N3 B DA 2 ? ? C4 B DA 2 ? ? 121.28 110.60 10.68 0.50 N 12 1 N3 B DA 2 ? ? C4 B DA 2 ? ? C5 B DA 2 ? ? 121.08 126.80 -5.72 0.70 N 13 1 C5 B DA 2 ? ? C6 B DA 2 ? ? N1 B DA 2 ? ? 121.06 117.70 3.36 0.50 N 14 1 C5 B DA 2 ? ? N7 B DA 2 ? ? C8 B DA 2 ? ? 107.16 103.90 3.26 0.50 N 15 1 N7 B DA 2 ? ? C8 B DA 2 ? ? N9 B DA 2 ? ? 109.04 113.80 -4.76 0.50 N 16 1 C8 B DA 2 ? ? N9 B DA 2 ? ? C4 B DA 2 ? ? 109.12 105.80 3.32 0.40 N 17 1 N3 B DA 2 ? ? C4 B DA 2 ? ? N9 B DA 2 ? ? 132.57 127.40 5.17 0.80 N 18 1 "C1'" B DT 3 ? ? "O4'" B DT 3 ? ? "C4'" B DT 3 ? ? 103.27 110.10 -6.83 1.00 N 19 1 N1 B DT 3 ? ? C2 B DT 3 ? ? N3 B DT 3 ? ? 119.60 114.60 5.00 0.60 N 20 1 C2 B DT 3 ? ? N3 B DT 3 ? ? C4 B DT 3 ? ? 119.65 127.20 -7.55 0.60 N 21 1 N3 B DT 3 ? ? C4 B DT 3 ? ? C5 B DT 3 ? ? 121.86 115.20 6.66 0.60 N 22 1 N3 B DT 3 ? ? C2 B DT 3 ? ? O2 B DT 3 ? ? 116.76 122.30 -5.54 0.60 N 23 1 N1 B DT 4 ? ? C2 B DT 4 ? ? N3 B DT 4 ? ? 118.92 114.60 4.32 0.60 N 24 1 C2 B DT 4 ? ? N3 B DT 4 ? ? C4 B DT 4 ? ? 121.16 127.20 -6.04 0.60 N 25 1 N3 B DT 4 ? ? C4 B DT 4 ? ? C5 B DT 4 ? ? 120.93 115.20 5.73 0.60 N 26 1 N3 B DT 4 ? ? C2 B DT 4 ? ? O2 B DT 4 ? ? 115.92 122.30 -6.38 0.60 N 27 1 N3 B DT 4 ? ? C4 B DT 4 ? ? O4 B DT 4 ? ? 115.68 119.90 -4.22 0.60 N 28 1 "C5'" B DG 5 ? ? "C4'" B DG 5 ? ? "O4'" B DG 5 ? ? 116.56 109.80 6.76 1.10 N 29 1 C6 B DG 5 ? ? N1 B DG 5 ? ? C2 B DG 5 ? ? 119.93 125.10 -5.17 0.60 N 30 1 C2 B DG 5 ? ? N3 B DG 5 ? ? C4 B DG 5 ? ? 121.38 111.90 9.48 0.50 N 31 1 N3 B DG 5 ? ? C4 B DG 5 ? ? C5 B DG 5 ? ? 120.88 128.60 -7.72 0.50 N 32 1 C5 B DG 5 ? ? C6 B DG 5 ? ? N1 B DG 5 ? ? 119.51 111.50 8.01 0.50 N 33 1 C4 B DG 5 ? ? C5 B DG 5 ? ? N7 B DG 5 ? ? 107.70 110.80 -3.10 0.40 N 34 1 N3 B DG 5 ? ? C4 B DG 5 ? ? N9 B DG 5 ? ? 132.30 126.00 6.30 0.60 N 35 1 C6 B DG 5 ? ? C5 B DG 5 ? ? N7 B DG 5 ? ? 134.42 130.40 4.02 0.60 N 36 1 N1 B DG 5 ? ? C2 B DG 5 ? ? N2 B DG 5 ? ? 121.91 116.20 5.71 0.90 N 37 1 C5 B DG 5 ? ? C6 B DG 5 ? ? O6 B DG 5 ? ? 120.97 128.60 -7.63 0.60 N 38 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1 B DT 6 ? ? 110.44 108.30 2.14 0.30 N 39 1 N1 B DT 6 ? ? C2 B DT 6 ? ? N3 B DT 6 ? ? 120.14 114.60 5.54 0.60 N 40 1 C2 B DT 6 ? ? N3 B DT 6 ? ? C4 B DT 6 ? ? 119.65 127.20 -7.55 0.60 N 41 1 N3 B DT 6 ? ? C4 B DT 6 ? ? C5 B DT 6 ? ? 121.45 115.20 6.25 0.60 N 42 1 N3 B DT 6 ? ? C2 B DT 6 ? ? O2 B DT 6 ? ? 117.67 122.30 -4.63 0.60 N 43 1 "C3'" B DT 6 ? ? "O3'" B DT 6 ? ? P B DG 7 ? ? 127.01 119.70 7.31 1.20 Y 44 1 C6 B DG 7 ? ? N1 B DG 7 ? ? C2 B DG 7 ? ? 120.16 125.10 -4.94 0.60 N 45 1 N1 B DG 7 ? ? C2 B DG 7 ? ? N3 B DG 7 ? ? 118.95 123.90 -4.95 0.60 N 46 1 C2 B DG 7 ? ? N3 B DG 7 ? ? C4 B DG 7 ? ? 123.00 111.90 11.10 0.50 N 47 1 N3 B DG 7 ? ? C4 B DG 7 ? ? C5 B DG 7 ? ? 120.33 128.60 -8.27 0.50 N 48 1 C5 B DG 7 ? ? C6 B DG 7 ? ? N1 B DG 7 ? ? 119.57 111.50 8.07 0.50 N 49 1 C4 B DG 7 ? ? C5 B DG 7 ? ? N7 B DG 7 ? ? 107.41 110.80 -3.39 0.40 N 50 1 C5 B DG 7 ? ? N7 B DG 7 ? ? C8 B DG 7 ? ? 107.49 104.30 3.19 0.50 N 51 1 N3 B DG 7 ? ? C4 B DG 7 ? ? N9 B DG 7 ? ? 132.48 126.00 6.48 0.60 N 52 1 C6 B DG 7 ? ? C5 B DG 7 ? ? N7 B DG 7 ? ? 134.71 130.40 4.31 0.60 N 53 1 C5 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 122.05 128.60 -6.55 0.60 N 54 1 "C1'" B DA 8 ? ? "O4'" B DA 8 ? ? "C4'" B DA 8 ? ? 103.42 110.10 -6.68 1.00 N 55 1 "C3'" B DA 8 ? ? "C2'" B DA 8 ? ? "C1'" B DA 8 ? ? 95.09 102.40 -7.31 0.80 N 56 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 114.42 108.30 6.12 0.30 N 57 1 N1 B DA 8 ? ? C2 B DA 8 ? ? N3 B DA 8 ? ? 119.44 129.30 -9.86 0.50 N 58 1 C2 B DA 8 ? ? N3 B DA 8 ? ? C4 B DA 8 ? ? 121.95 110.60 11.35 0.50 N 59 1 N3 B DA 8 ? ? C4 B DA 8 ? ? C5 B DA 8 ? ? 120.49 126.80 -6.31 0.70 N 60 1 C5 B DA 8 ? ? C6 B DA 8 ? ? N1 B DA 8 ? ? 120.99 117.70 3.29 0.50 N 61 1 C4 B DA 8 ? ? C5 B DA 8 ? ? N7 B DA 8 ? ? 107.67 110.70 -3.03 0.50 N 62 1 N7 B DA 8 ? ? C8 B DA 8 ? ? N9 B DA 8 ? ? 110.57 113.80 -3.23 0.50 N 63 1 C8 B DA 8 ? ? N9 B DA 8 ? ? C4 B DA 8 ? ? 108.46 105.80 2.66 0.40 N 64 1 N3 B DA 8 ? ? C4 B DA 8 ? ? N9 B DA 8 ? ? 132.91 127.40 5.51 0.80 N 65 1 C6 B DA 8 ? ? C5 B DA 8 ? ? N7 B DA 8 ? ? 136.56 132.30 4.26 0.70 N 66 1 "C5'" B DG 9 ? ? "C4'" B DG 9 ? ? "O4'" B DG 9 ? ? 117.16 109.80 7.36 1.10 N 67 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.11 108.30 2.81 0.30 N 68 1 C6 B DG 9 ? ? N1 B DG 9 ? ? C2 B DG 9 ? ? 119.75 125.10 -5.35 0.60 N 69 1 C2 B DG 9 ? ? N3 B DG 9 ? ? C4 B DG 9 ? ? 120.84 111.90 8.94 0.50 N 70 1 N3 B DG 9 ? ? C4 B DG 9 ? ? C5 B DG 9 ? ? 121.89 128.60 -6.71 0.50 N 71 1 C5 B DG 9 ? ? C6 B DG 9 ? ? N1 B DG 9 ? ? 118.92 111.50 7.42 0.50 N 72 1 C4 B DG 9 ? ? C5 B DG 9 ? ? N7 B DG 9 ? ? 108.23 110.80 -2.57 0.40 N 73 1 N3 B DG 9 ? ? C4 B DG 9 ? ? N9 B DG 9 ? ? 131.98 126.00 5.98 0.60 N 74 1 C5 B DG 9 ? ? C6 B DG 9 ? ? O6 B DG 9 ? ? 119.32 128.60 -9.28 0.60 N 75 1 "C1'" B DG 11 ? ? "O4'" B DG 11 ? ? "C4'" B DG 11 ? ? 101.58 110.10 -8.52 1.00 N 76 1 C6 B DG 11 ? ? N1 B DG 11 ? ? C2 B DG 11 ? ? 119.00 125.10 -6.10 0.60 N 77 1 C2 B DG 11 ? ? N3 B DG 11 ? ? C4 B DG 11 ? ? 120.75 111.90 8.85 0.50 N 78 1 N3 B DG 11 ? ? C4 B DG 11 ? ? C5 B DG 11 ? ? 121.19 128.60 -7.41 0.50 N 79 1 C5 B DG 11 ? ? C6 B DG 11 ? ? N1 B DG 11 ? ? 119.22 111.50 7.72 0.50 N 80 1 C4 B DG 11 ? ? C5 B DG 11 ? ? N7 B DG 11 ? ? 107.56 110.80 -3.24 0.40 N 81 1 N3 B DG 11 ? ? C4 B DG 11 ? ? N9 B DG 11 ? ? 131.68 126.00 5.68 0.60 N 82 1 C5 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 121.80 128.60 -6.80 0.60 N 83 1 "O4'" C DC 1 ? ? "C1'" C DC 1 ? ? N1 C DC 1 ? ? 110.13 108.30 1.83 0.30 N 84 1 "C1'" C DG 2 ? ? "O4'" C DG 2 ? ? "C4'" C DG 2 ? ? 102.28 110.10 -7.82 1.00 N 85 1 C6 C DG 2 ? ? N1 C DG 2 ? ? C2 C DG 2 ? ? 119.53 125.10 -5.57 0.60 N 86 1 N1 C DG 2 ? ? C2 C DG 2 ? ? N3 C DG 2 ? ? 119.78 123.90 -4.12 0.60 N 87 1 C2 C DG 2 ? ? N3 C DG 2 ? ? C4 C DG 2 ? ? 121.51 111.90 9.61 0.50 N 88 1 N3 C DG 2 ? ? C4 C DG 2 ? ? C5 C DG 2 ? ? 121.56 128.60 -7.04 0.50 N 89 1 C5 C DG 2 ? ? C6 C DG 2 ? ? N1 C DG 2 ? ? 120.03 111.50 8.53 0.50 N 90 1 C5 C DG 2 ? ? N7 C DG 2 ? ? C8 C DG 2 ? ? 107.39 104.30 3.09 0.50 N 91 1 N7 C DG 2 ? ? C8 C DG 2 ? ? N9 C DG 2 ? ? 109.06 113.10 -4.04 0.50 N 92 1 C8 C DG 2 ? ? N9 C DG 2 ? ? C4 C DG 2 ? ? 109.25 106.40 2.85 0.40 N 93 1 N3 C DG 2 ? ? C4 C DG 2 ? ? N9 C DG 2 ? ? 132.32 126.00 6.32 0.60 N 94 1 C5 C DG 2 ? ? C6 C DG 2 ? ? O6 C DG 2 ? ? 122.08 128.60 -6.52 0.60 N 95 1 N1 C DT 4 ? ? C2 C DT 4 ? ? N3 C DT 4 ? ? 119.31 114.60 4.71 0.60 N 96 1 C2 C DT 4 ? ? N3 C DT 4 ? ? C4 C DT 4 ? ? 120.26 127.20 -6.94 0.60 N 97 1 N3 C DT 4 ? ? C4 C DT 4 ? ? C5 C DT 4 ? ? 121.97 115.20 6.77 0.60 N 98 1 N3 C DT 4 ? ? C2 C DT 4 ? ? O2 C DT 4 ? ? 117.11 122.30 -5.19 0.60 N 99 1 N3 C DT 4 ? ? C4 C DT 4 ? ? O4 C DT 4 ? ? 113.43 119.90 -6.47 0.60 N 100 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.84 108.30 2.54 0.30 N 101 1 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.33 121.90 -4.57 0.70 N 102 1 "C5'" C DA 6 ? ? "C4'" C DA 6 ? ? "O4'" C DA 6 ? ? 116.73 109.80 6.93 1.10 N 103 1 "C1'" C DA 6 ? ? "O4'" C DA 6 ? ? "C4'" C DA 6 ? ? 103.24 110.10 -6.86 1.00 N 104 1 "O4'" C DA 6 ? ? "C1'" C DA 6 ? ? N9 C DA 6 ? ? 110.52 108.30 2.22 0.30 N 105 1 N1 C DA 6 ? ? C2 C DA 6 ? ? N3 C DA 6 ? ? 119.38 129.30 -9.92 0.50 N 106 1 C2 C DA 6 ? ? N3 C DA 6 ? ? C4 C DA 6 ? ? 122.40 110.60 11.80 0.50 N 107 1 N3 C DA 6 ? ? C4 C DA 6 ? ? C5 C DA 6 ? ? 119.15 126.80 -7.65 0.70 N 108 1 C5 C DA 6 ? ? C6 C DA 6 ? ? N1 C DA 6 ? ? 121.69 117.70 3.99 0.50 N 109 1 N7 C DA 6 ? ? C8 C DA 6 ? ? N9 C DA 6 ? ? 110.69 113.80 -3.11 0.50 N 110 1 C8 C DA 6 ? ? N9 C DA 6 ? ? C4 C DA 6 ? ? 108.74 105.80 2.94 0.40 N 111 1 N3 C DA 6 ? ? C4 C DA 6 ? ? N9 C DA 6 ? ? 135.28 127.40 7.88 0.80 N 112 1 C5 C DA 6 ? ? C6 C DA 6 ? ? N6 C DA 6 ? ? 117.98 123.70 -5.72 0.80 N 113 1 "C3'" C DA 6 ? ? "O3'" C DA 6 ? ? P C DC 7 ? ? 127.87 119.70 8.17 1.20 Y 114 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? "C2'" C DC 7 ? ? 100.45 105.90 -5.45 0.80 N 115 1 N1 C DC 7 ? ? C2 C DC 7 ? ? O2 C DC 7 ? ? 123.06 118.90 4.16 0.60 N 116 1 C6 C DA 8 ? ? N1 C DA 8 ? ? C2 C DA 8 ? ? 122.23 118.60 3.63 0.60 N 117 1 N1 C DA 8 ? ? C2 C DA 8 ? ? N3 C DA 8 ? ? 120.09 129.30 -9.21 0.50 N 118 1 C2 C DA 8 ? ? N3 C DA 8 ? ? C4 C DA 8 ? ? 120.54 110.60 9.94 0.50 N 119 1 N3 C DA 8 ? ? C4 C DA 8 ? ? C5 C DA 8 ? ? 121.45 126.80 -5.35 0.70 N 120 1 C4 C DA 8 ? ? C5 C DA 8 ? ? N7 C DA 8 ? ? 107.43 110.70 -3.27 0.50 N 121 1 N1 C DA 9 ? ? C2 C DA 9 ? ? N3 C DA 9 ? ? 119.66 129.30 -9.64 0.50 N 122 1 C2 C DA 9 ? ? N3 C DA 9 ? ? C4 C DA 9 ? ? 122.92 110.60 12.32 0.50 N 123 1 N3 C DA 9 ? ? C4 C DA 9 ? ? C5 C DA 9 ? ? 118.98 126.80 -7.82 0.70 N 124 1 C5 C DA 9 ? ? C6 C DA 9 ? ? N1 C DA 9 ? ? 122.17 117.70 4.47 0.50 N 125 1 N3 C DA 9 ? ? C4 C DA 9 ? ? N9 C DA 9 ? ? 134.16 127.40 6.76 0.80 N 126 1 C5 C DA 9 ? ? C6 C DA 9 ? ? N6 C DA 9 ? ? 118.44 123.70 -5.26 0.80 N 127 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 103.10 108.00 -4.90 0.70 N 128 1 N1 C DT 10 ? ? C2 C DT 10 ? ? N3 C DT 10 ? ? 119.18 114.60 4.58 0.60 N 129 1 C2 C DT 10 ? ? N3 C DT 10 ? ? C4 C DT 10 ? ? 120.05 127.20 -7.15 0.60 N 130 1 N3 C DT 10 ? ? C4 C DT 10 ? ? C5 C DT 10 ? ? 121.28 115.20 6.08 0.60 N 131 1 N3 C DT 10 ? ? C2 C DT 10 ? ? O2 C DT 10 ? ? 116.70 122.30 -5.60 0.60 N 132 1 N3 C DT 10 ? ? C4 C DT 10 ? ? O4 C DT 10 ? ? 116.12 119.90 -3.78 0.60 N 133 1 C4 C DT 10 ? ? C5 C DT 10 ? ? C7 C DT 10 ? ? 123.42 119.00 4.42 0.60 N 134 1 C6 C DT 10 ? ? C5 C DT 10 ? ? C7 C DT 10 ? ? 118.11 122.90 -4.79 0.60 N 135 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? "C2'" C DT 11 ? ? 110.33 106.80 3.53 0.50 N 136 1 N1 C DT 11 ? ? C2 C DT 11 ? ? N3 C DT 11 ? ? 119.50 114.60 4.90 0.60 N 137 1 C2 C DT 11 ? ? N3 C DT 11 ? ? C4 C DT 11 ? ? 119.83 127.20 -7.37 0.60 N 138 1 N3 C DT 11 ? ? C4 C DT 11 ? ? C5 C DT 11 ? ? 121.44 115.20 6.24 0.60 N 139 1 N3 C DT 11 ? ? C2 C DT 11 ? ? O2 C DT 11 ? ? 116.73 122.30 -5.57 0.60 N 140 1 N3 C DT 11 ? ? C4 C DT 11 ? ? O4 C DT 11 ? ? 116.29 119.90 -3.61 0.60 N 141 1 C4 C DT 11 ? ? C5 C DT 11 ? ? C7 C DT 11 ? ? 122.65 119.00 3.65 0.60 N 142 1 C6 C DT 11 ? ? C5 C DT 11 ? ? C7 C DT 11 ? ? 118.67 122.90 -4.23 0.60 N 143 1 CB A TYR 7 ? ? CG A TYR 7 ? ? CD1 A TYR 7 ? ? 117.28 121.00 -3.72 0.60 N 144 1 NE A ARG 22 ? ? CZ A ARG 22 ? ? NH2 A ARG 22 ? ? 115.75 120.30 -4.55 0.50 N 145 1 CB A TYR 47 ? ? CG A TYR 47 ? ? CD2 A TYR 47 ? ? 116.01 121.00 -4.99 0.60 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 61.46 _pdbx_validate_torsion.psi 68.79 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id VAL _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 23 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.01 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA B 2 ? ? 0.055 'SIDE CHAIN' 2 1 DT B 4 ? ? 0.100 'SIDE CHAIN' 3 1 DT B 6 ? ? 0.078 'SIDE CHAIN' 4 1 DG B 7 ? ? 0.181 'SIDE CHAIN' 5 1 DA B 8 ? ? 0.094 'SIDE CHAIN' 6 1 DG B 9 ? ? 0.156 'SIDE CHAIN' 7 1 DC B 10 ? ? 0.101 'SIDE CHAIN' 8 1 DG B 11 ? ? 0.105 'SIDE CHAIN' 9 1 DT C 4 ? ? 0.101 'SIDE CHAIN' 10 1 DC C 5 ? ? 0.104 'SIDE CHAIN' 11 1 DA C 6 ? ? 0.115 'SIDE CHAIN' 12 1 DA C 9 ? ? 0.076 'SIDE CHAIN' 13 1 DT C 10 ? ? 0.091 'SIDE CHAIN' 14 1 ARG A 51 ? ? 0.078 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1LCC 'double helix' 1LCC 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 11 1_555 -0.087 -0.173 -2.093 -33.954 -19.165 -7.390 1 B_DA1:DT11_C B 1 ? C 11 ? 20 1 1 A DA 2 1_555 B DT 10 1_555 -0.076 0.085 0.064 -20.896 -12.839 -11.977 2 B_DA2:DT10_C B 2 ? C 10 ? 20 1 1 A DT 3 1_555 B DA 9 1_555 -0.219 0.177 0.790 -19.198 -11.635 -23.794 3 B_DT3:DA9_C B 3 ? C 9 ? 20 1 1 A DT 4 1_555 B DA 8 1_555 -0.826 -0.184 0.104 -8.903 -13.839 -3.222 4 B_DT4:DA8_C B 4 ? C 8 ? 20 1 1 A DG 5 1_555 B DC 7 1_555 -0.214 -0.274 -0.002 -2.772 -8.269 -5.894 5 B_DG5:DC7_C B 5 ? C 7 ? 19 1 1 A DT 6 1_555 B DA 6 1_555 -0.293 -0.057 0.376 2.568 -12.420 -12.525 6 B_DT6:DA6_C B 6 ? C 6 ? 20 1 1 A DG 7 1_555 B DC 5 1_555 -0.725 -0.146 0.161 7.344 -19.956 -1.044 7 B_DG7:DC5_C B 7 ? C 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.461 0.060 0.041 -1.239 -17.784 -12.036 8 B_DA8:DT4_C B 8 ? C 4 ? 20 1 1 A DG 9 1_555 B DC 3 1_555 0.155 -0.282 1.283 9.088 -10.228 0.920 9 B_DG9:DC3_C B 9 ? C 3 ? 19 1 1 A DC 10 1_555 B DG 2 1_555 0.135 -0.187 0.719 1.307 -12.180 0.903 10 B_DC10:DG2_C B 10 ? C 2 ? 19 1 1 A DG 11 1_555 B DC 1 1_555 -1.069 -0.249 -0.117 -9.088 -22.036 2.644 11 B_DG11:DC1_C B 11 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 11 1_555 A DA 2 1_555 B DT 10 1_555 -0.863 0.298 2.995 -17.329 -0.384 37.336 0.466 -0.615 3.084 -0.564 25.458 41.033 1 BB_DA1DA2:DT10DT11_CC B 1 ? C 11 ? B 2 ? C 10 ? 1 A DA 2 1_555 B DT 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.752 -0.987 3.313 -1.583 -0.177 28.657 -1.951 1.154 3.355 -0.358 3.194 28.700 2 BB_DA2DT3:DA9DT10_CC B 2 ? C 10 ? B 3 ? C 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DT 4 1_555 B DA 8 1_555 1.299 0.856 3.157 11.427 -18.740 43.191 2.473 -0.722 2.821 -23.721 -14.465 48.210 3 BB_DT3DT4:DA8DA9_CC B 3 ? C 9 ? B 4 ? C 8 ? 1 A DT 4 1_555 B DA 8 1_555 A DG 5 1_555 B DC 7 1_555 0.350 -0.110 3.104 -1.467 11.542 39.033 -1.368 -0.657 2.942 16.825 2.138 40.666 4 BB_DT4DG5:DC7DA8_CC B 4 ? C 8 ? B 5 ? C 7 ? 1 A DG 5 1_555 B DC 7 1_555 A DT 6 1_555 B DA 6 1_555 -0.483 -0.598 3.017 -4.253 -3.863 31.770 -0.428 0.157 3.103 -6.986 7.690 32.272 5 BB_DG5DT6:DA6DC7_CC B 5 ? C 7 ? B 6 ? C 6 ? 1 A DT 6 1_555 B DA 6 1_555 A DG 7 1_555 B DC 5 1_555 -0.043 -1.131 2.901 -1.915 15.017 30.722 -3.856 -0.173 2.133 26.426 3.370 34.169 6 BB_DT6DG7:DC5DA6_CC B 6 ? C 6 ? B 7 ? C 5 ? 1 A DG 7 1_555 B DC 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.496 -0.175 3.463 -2.859 0.771 34.528 -0.420 0.365 3.487 1.296 4.805 34.651 7 BB_DG7DA8:DT4DC5_CC B 7 ? C 5 ? B 8 ? C 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DG 9 1_555 B DC 3 1_555 0.660 0.189 2.881 -12.745 1.099 37.241 0.170 -2.272 2.534 1.662 19.274 39.304 8 BB_DA8DG9:DC3DT4_CC B 8 ? C 4 ? B 9 ? C 3 ? 1 A DG 9 1_555 B DC 3 1_555 A DC 10 1_555 B DG 2 1_555 -0.849 -0.912 3.522 1.552 -0.946 34.101 -1.393 1.711 3.504 -1.612 -2.644 34.148 9 BB_DG9DC10:DG2DC3_CC B 9 ? C 3 ? B 10 ? C 2 ? 1 A DC 10 1_555 B DG 2 1_555 A DG 11 1_555 B DC 1 1_555 -0.118 -1.057 3.501 1.731 21.508 24.947 -5.408 0.494 1.986 41.287 -3.323 32.872 10 BB_DC10DG11:DC1DG2_CC B 10 ? C 2 ? B 11 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 water HOH #