data_1LXI # _entry.id 1LXI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1LXI RCSB RCSB016380 WWPDB D_1000016380 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1BMP _pdbx_database_related.details 'The same protein originally refined to 2.8 Angstroms.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1LXI _pdbx_database_status.recvd_initial_deposition_date 2002-06-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Greenwald, J.' 1 'Groppe, J.' 2 'Kwiatkowski, W.' 3 'Choe, S.' 4 # _citation.id primary _citation.title ;The BMP7/ActRII Extracellular Domain Complex Provides New Insights into the Cooperative Nature of Receptor Assembly ; _citation.journal_abbrev Mol.Cell _citation.journal_volume 11 _citation.page_first 605 _citation.page_last 617 _citation.year 2003 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12667445 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(03)00094-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Greenwald, J.' 1 ? primary 'Groppe, J.' 2 ? primary 'Gray, P.' 3 ? primary 'Wiater, E.' 4 ? primary 'Kwiatkowski, W.' 5 ? primary 'Vale, W.' 6 ? primary 'Choe, S.' 7 ? # _cell.entry_id 1LXI _cell.length_a 101.294 _cell.length_b 101.294 _cell.length_c 41.812 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LXI _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BONE MORPHOGENETIC PROTEIN 7' 15699.730 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BMP7, Osteogenic protein 1, OP-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; _entity_poly.pdbx_seq_one_letter_code_can ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 GLY n 1 4 SER n 1 5 LYS n 1 6 GLN n 1 7 ARG n 1 8 SER n 1 9 GLN n 1 10 ASN n 1 11 ARG n 1 12 SER n 1 13 LYS n 1 14 THR n 1 15 PRO n 1 16 LYS n 1 17 ASN n 1 18 GLN n 1 19 GLU n 1 20 ALA n 1 21 LEU n 1 22 ARG n 1 23 MET n 1 24 ALA n 1 25 ASN n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ASN n 1 30 SER n 1 31 SER n 1 32 SER n 1 33 ASP n 1 34 GLN n 1 35 ARG n 1 36 GLN n 1 37 ALA n 1 38 CYS n 1 39 LYS n 1 40 LYS n 1 41 HIS n 1 42 GLU n 1 43 LEU n 1 44 TYR n 1 45 VAL n 1 46 SER n 1 47 PHE n 1 48 ARG n 1 49 ASP n 1 50 LEU n 1 51 GLY n 1 52 TRP n 1 53 GLN n 1 54 ASP n 1 55 TRP n 1 56 ILE n 1 57 ILE n 1 58 ALA n 1 59 PRO n 1 60 GLU n 1 61 GLY n 1 62 TYR n 1 63 ALA n 1 64 ALA n 1 65 TYR n 1 66 TYR n 1 67 CYS n 1 68 GLU n 1 69 GLY n 1 70 GLU n 1 71 CYS n 1 72 ALA n 1 73 PHE n 1 74 PRO n 1 75 LEU n 1 76 ASN n 1 77 SER n 1 78 TYR n 1 79 MET n 1 80 ASN n 1 81 ALA n 1 82 THR n 1 83 ASN n 1 84 HIS n 1 85 ALA n 1 86 ILE n 1 87 VAL n 1 88 GLN n 1 89 THR n 1 90 LEU n 1 91 VAL n 1 92 HIS n 1 93 PHE n 1 94 ILE n 1 95 ASN n 1 96 PRO n 1 97 GLU n 1 98 THR n 1 99 VAL n 1 100 PRO n 1 101 LYS n 1 102 PRO n 1 103 CYS n 1 104 CYS n 1 105 ALA n 1 106 PRO n 1 107 THR n 1 108 GLN n 1 109 LEU n 1 110 ASN n 1 111 ALA n 1 112 ILE n 1 113 SER n 1 114 VAL n 1 115 LEU n 1 116 TYR n 1 117 PHE n 1 118 ASP n 1 119 ASP n 1 120 SER n 1 121 SER n 1 122 ASN n 1 123 VAL n 1 124 ILE n 1 125 LEU n 1 126 LYS n 1 127 LYS n 1 128 TYR n 1 129 ARG n 1 130 ASN n 1 131 MET n 1 132 VAL n 1 133 VAL n 1 134 ARG n 1 135 ALA n 1 136 CYS n 1 137 GLY n 1 138 CYS n 1 139 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene BMP7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Chinese hamster' _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus Cricetulus _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'OVARY CELLS' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description DHFR- # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BMP7_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN ATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH ; _struct_ref.pdbx_align_begin 293 _struct_ref.pdbx_db_accession P18075 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1LXI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P18075 _struct_ref_seq.db_align_beg 293 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 431 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 139 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1LXI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.80 _exptl_crystal.density_Matthews 3.94 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '20% MPD, 0.1M Sodium Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-09-01 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 311' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 1LXI _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 25 _reflns.number_all 15770 _reflns.number_obs 15770 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI 16.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.08 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.333 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1LXI _refine.ls_number_reflns_obs 14892 _refine.ls_number_reflns_all 14892 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 23.96 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 92.61 _refine.ls_R_factor_obs 0.22873 _refine.ls_R_factor_all 0.22873 _refine.ls_R_factor_R_work 0.22788 _refine.ls_R_factor_R_free 0.24449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 795 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 35.983 _refine.aniso_B[1][1] -1.29 _refine.aniso_B[2][2] -1.29 _refine.aniso_B[3][3] 1.93 _refine.aniso_B[1][2] -0.64 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1BMP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.119 _refine.overall_SU_B 4.128 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 828 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 913 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 23.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.021 ? 872 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 742 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.462 1.949 ? 1198 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.424 3.000 ? 1729 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.157 3.000 ? 107 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 23.505 15.000 ? 139 'X-RAY DIFFRACTION' ? r_chiral_restr 0.156 0.200 ? 131 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 967 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.008 0.020 ? 173 'X-RAY DIFFRACTION' ? r_nbd_refined 0.306 0.300 ? 175 'X-RAY DIFFRACTION' ? r_nbd_other 0.232 0.300 ? 650 'X-RAY DIFFRACTION' ? r_nbtor_other 0.389 0.500 ? 2 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.409 0.500 ? 68 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.120 0.500 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.309 0.300 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.255 0.300 ? 42 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.667 0.500 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 1.618 1.500 ? 528 'X-RAY DIFFRACTION' ? r_mcangle_it 2.880 2.000 ? 859 'X-RAY DIFFRACTION' ? r_scbond_it 4.093 3.000 ? 344 'X-RAY DIFFRACTION' ? r_scangle_it 6.526 4.500 ? 339 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 1160 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1LXI _struct.title 'Refinement of BMP7 crystal structure' _struct.pdbx_descriptor 'BONE MORPHOGENETIC PROTEIN 7' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1LXI _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text 'Cystine-knot growth factor, HORMONE-GROWTH FACTOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the biological assembly is generated by the two fold axis: x-y+1,-y+2,1/3-z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 47 ? GLY A 51 ? PHE A 47 GLY A 51 1 ? 5 HELX_P HELX_P2 2 ASN A 76 ? ASN A 80 ? ASN A 76 ASN A 80 5 ? 5 HELX_P HELX_P3 3 THR A 82 ? ASN A 95 ? THR A 82 ASN A 95 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 38 A CYS 104 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf2 disulf ? ? A CYS 67 SG ? ? ? 1_555 A CYS 136 SG ? ? A CYS 67 A CYS 136 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 138 SG ? ? A CYS 71 A CYS 138 1_555 ? ? ? ? ? ? ? 2.129 ? ? covale1 covale one ? A ASN 80 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 80 A NAG 180 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 58 A . ? ALA 58 A PRO 59 A ? PRO 59 A 1 -2.92 2 PHE 73 A . ? PHE 73 A PRO 74 A ? PRO 74 A 1 3.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 39 ? HIS A 41 ? LYS A 39 HIS A 41 A 2 TYR A 66 ? GLU A 68 ? TYR A 66 GLU A 68 B 1 TYR A 44 ? SER A 46 ? TYR A 44 SER A 46 B 2 GLY A 61 ? ALA A 63 ? GLY A 61 ALA A 63 C 1 ILE A 56 ? ALA A 58 ? ILE A 56 ALA A 58 C 2 CYS A 104 ? PHE A 117 ? CYS A 104 PHE A 117 C 3 VAL A 123 ? CYS A 138 ? VAL A 123 CYS A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 41 ? N HIS A 41 O TYR A 66 ? O TYR A 66 B 1 2 N VAL A 45 ? N VAL A 45 O TYR A 62 ? O TYR A 62 C 1 2 N ALA A 58 ? N ALA A 58 O LEU A 115 ? O LEU A 115 C 2 3 N ILE A 112 ? N ILE A 112 O TYR A 128 ? O TYR A 128 # _database_PDB_matrix.entry_id 1LXI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1LXI _atom_sites.fract_transf_matrix[1][1] 0.009872 _atom_sites.fract_transf_matrix[1][2] 0.005700 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011399 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023917 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 ARG 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 GLN 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 ARG 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 LYS 13 13 ? ? ? A . n A 1 14 THR 14 14 ? ? ? A . n A 1 15 PRO 15 15 ? ? ? A . n A 1 16 LYS 16 16 ? ? ? A . n A 1 17 ASN 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 LEU 21 21 ? ? ? A . n A 1 22 ARG 22 22 ? ? ? A . n A 1 23 MET 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 ASN 25 25 ? ? ? A . n A 1 26 VAL 26 26 ? ? ? A . n A 1 27 ALA 27 27 ? ? ? A . n A 1 28 GLU 28 28 ? ? ? A . n A 1 29 ASN 29 29 ? ? ? A . n A 1 30 SER 30 30 ? ? ? A . n A 1 31 SER 31 31 ? ? ? A . n A 1 32 SER 32 32 ? ? ? A . n A 1 33 ASP 33 33 ? ? ? A . n A 1 34 GLN 34 34 ? ? ? A . n A 1 35 ARG 35 35 ? ? ? A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 CYS 104 104 104 CYS CYS A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 CYS 136 136 136 CYS CYS A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 CYS 138 138 138 CYS CYS A . n A 1 139 HIS 139 139 139 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 180 180 NAG NAG A . C 3 HOH 1 181 1 HOH HOH A . C 3 HOH 2 182 2 HOH HOH A . C 3 HOH 3 183 3 HOH HOH A . C 3 HOH 4 184 4 HOH HOH A . C 3 HOH 5 185 5 HOH HOH A . C 3 HOH 6 186 6 HOH HOH A . C 3 HOH 7 187 7 HOH HOH A . C 3 HOH 8 188 8 HOH HOH A . C 3 HOH 9 189 9 HOH HOH A . C 3 HOH 10 190 10 HOH HOH A . C 3 HOH 11 191 11 HOH HOH A . C 3 HOH 12 192 12 HOH HOH A . C 3 HOH 13 193 13 HOH HOH A . C 3 HOH 14 194 14 HOH HOH A . C 3 HOH 15 195 15 HOH HOH A . C 3 HOH 16 196 16 HOH HOH A . C 3 HOH 17 197 17 HOH HOH A . C 3 HOH 18 198 18 HOH HOH A . C 3 HOH 19 199 19 HOH HOH A . C 3 HOH 20 200 20 HOH HOH A . C 3 HOH 21 201 21 HOH HOH A . C 3 HOH 22 202 22 HOH HOH A . C 3 HOH 23 203 23 HOH HOH A . C 3 HOH 24 204 24 HOH HOH A . C 3 HOH 25 205 25 HOH HOH A . C 3 HOH 26 206 26 HOH HOH A . C 3 HOH 27 207 27 HOH HOH A . C 3 HOH 28 208 28 HOH HOH A . C 3 HOH 29 209 29 HOH HOH A . C 3 HOH 30 210 30 HOH HOH A . C 3 HOH 31 211 31 HOH HOH A . C 3 HOH 32 212 32 HOH HOH A . C 3 HOH 33 213 33 HOH HOH A . C 3 HOH 34 214 34 HOH HOH A . C 3 HOH 35 215 35 HOH HOH A . C 3 HOH 36 216 36 HOH HOH A . C 3 HOH 37 217 37 HOH HOH A . C 3 HOH 38 218 38 HOH HOH A . C 3 HOH 39 219 39 HOH HOH A . C 3 HOH 40 220 40 HOH HOH A . C 3 HOH 41 221 41 HOH HOH A . C 3 HOH 42 222 42 HOH HOH A . C 3 HOH 43 223 43 HOH HOH A . C 3 HOH 44 224 44 HOH HOH A . C 3 HOH 45 225 45 HOH HOH A . C 3 HOH 46 226 46 HOH HOH A . C 3 HOH 47 227 47 HOH HOH A . C 3 HOH 48 228 48 HOH HOH A . C 3 HOH 49 229 49 HOH HOH A . C 3 HOH 50 230 50 HOH HOH A . C 3 HOH 51 231 51 HOH HOH A . C 3 HOH 52 232 52 HOH HOH A . C 3 HOH 53 233 53 HOH HOH A . C 3 HOH 54 234 54 HOH HOH A . C 3 HOH 55 235 55 HOH HOH A . C 3 HOH 56 236 56 HOH HOH A . C 3 HOH 57 237 57 HOH HOH A . C 3 HOH 58 238 58 HOH HOH A . C 3 HOH 59 239 59 HOH HOH A . C 3 HOH 60 240 60 HOH HOH A . C 3 HOH 61 241 61 HOH HOH A . C 3 HOH 62 242 62 HOH HOH A . C 3 HOH 63 243 63 HOH HOH A . C 3 HOH 64 244 64 HOH HOH A . C 3 HOH 65 245 65 HOH HOH A . C 3 HOH 66 246 66 HOH HOH A . C 3 HOH 67 247 67 HOH HOH A . C 3 HOH 68 248 68 HOH HOH A . C 3 HOH 69 249 69 HOH HOH A . C 3 HOH 70 250 70 HOH HOH A . C 3 HOH 71 251 71 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 80 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 80 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3170 ? 1 MORE -15 ? 1 'SSA (A^2)' 12180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 175.4463545019 0.0000000000 0.0000000000 -1.0000000000 13.9373333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-01 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 TRUNCATE 'data reduction' . ? 2 REFMAC refinement 5.0 ? 3 HKL-2000 'data reduction' . ? 4 CCP4 'data scaling' '(TRUNCATE)' ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 110 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 134 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 244 ? ? 1_555 O A HOH 244 ? ? 5_675 1.22 2 1 SG A CYS 103 ? ? 1_555 SG A CYS 103 ? ? 5_675 1.67 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 103 ? ? CB A CYS 103 ? ? SG A CYS 103 ? ? 122.18 114.20 7.98 1.10 N 2 1 CB A PHE 117 ? ? CA A PHE 117 ? ? C A PHE 117 ? ? 97.73 110.40 -12.67 2.00 N 3 1 CA A HIS 139 ? ? C A HIS 139 ? ? O A HIS 139 ? ? 102.85 120.10 -17.25 2.10 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 65 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 63.40 _pdbx_validate_torsion.psi 174.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 A GLN 6 ? A GLN 6 7 1 Y 1 A ARG 7 ? A ARG 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A GLN 9 ? A GLN 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A ARG 11 ? A ARG 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A LYS 13 ? A LYS 13 14 1 Y 1 A THR 14 ? A THR 14 15 1 Y 1 A PRO 15 ? A PRO 15 16 1 Y 1 A LYS 16 ? A LYS 16 17 1 Y 1 A ASN 17 ? A ASN 17 18 1 Y 1 A GLN 18 ? A GLN 18 19 1 Y 1 A GLU 19 ? A GLU 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A LEU 21 ? A LEU 21 22 1 Y 1 A ARG 22 ? A ARG 22 23 1 Y 1 A MET 23 ? A MET 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A ASN 25 ? A ASN 25 26 1 Y 1 A VAL 26 ? A VAL 26 27 1 Y 1 A ALA 27 ? A ALA 27 28 1 Y 1 A GLU 28 ? A GLU 28 29 1 Y 1 A ASN 29 ? A ASN 29 30 1 Y 1 A SER 30 ? A SER 30 31 1 Y 1 A SER 31 ? A SER 31 32 1 Y 1 A SER 32 ? A SER 32 33 1 Y 1 A ASP 33 ? A ASP 33 34 1 Y 1 A GLN 34 ? A GLN 34 35 1 Y 1 A ARG 35 ? A ARG 35 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 water HOH #