HEADER PEPTIDE BINDING PROTEIN 03-JUL-02 1M4P TITLE STRUCTURE OF THE TSG101 UEV DOMAIN IN COMPLEX WITH A HIV-1 PTAP "LATE TITLE 2 DOMAIN" PEPTIDE, DYANA ENSEMBLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GAG POLYPROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TUMOR SUSCEPTIBILITY GENE 101; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 13 ORGANISM_TAXID: 11676; SOURCE 14 STRAIN: NL4-3; SOURCE 15 GENE: GAG; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PAED4 KEYWDS TSG101 UEV DOMAIN, VIRUS BUDDING, VACUOLAR PROTEIN SORTING, LATE KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.PORNILLOS,S.L.ALAM,D.R.DAVIS,W.I.SUNDQUIST REVDAT 3 23-FEB-22 1M4P 1 REMARK REVDAT 2 24-FEB-09 1M4P 1 VERSN REVDAT 1 06-NOV-02 1M4P 0 JRNL AUTH O.PORNILLOS,S.L.ALAM,D.R.DAVIS,W.I.SUNDQUIST JRNL TITL STRUCTURE OF THE TSG101 UEV DOMAIN IN COMPLEX WITH THE PTAP JRNL TITL 2 MOTIF OF THE HIV-1 P6 PROTEIN JRNL REF NAT.STRUCT.BIOL. V. 9 812 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12379843 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.2, DYANA 1.2 REMARK 3 AUTHORS : GNTERT, P., MUMENTHALER, C. & WTHRICH, K. (DYANA), REMARK 3 GNTERT, P., MUMENTHALER, C. & WTHRICH, K. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M4P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016594. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 120 H SER A 122 1.51 REMARK 500 O MET A 131 H PHE A 135 1.54 REMARK 500 H GLY A 100 O VAL A 103 1.54 REMARK 500 O ARG A 18 H VAL A 22 1.56 REMARK 500 O TYR A 17 H THR A 21 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 12 -86.33 -117.84 REMARK 500 1 TYR A 15 154.23 -38.61 REMARK 500 1 LYS A 33 1.21 82.01 REMARK 500 1 PHE A 44 -66.70 -154.26 REMARK 500 1 ASN A 45 93.43 -51.51 REMARK 500 1 ASP A 46 27.46 44.16 REMARK 500 1 LEU A 77 -173.47 -66.82 REMARK 500 1 THR A 79 39.12 179.22 REMARK 500 1 TYR A 82 -41.67 -163.11 REMARK 500 1 LYS A 90 79.30 -119.61 REMARK 500 1 THR A 92 -150.04 -81.63 REMARK 500 1 ALA A 105 -38.20 179.16 REMARK 500 1 LEU A 111 159.97 68.20 REMARK 500 1 TYR A 113 -77.75 59.94 REMARK 500 1 GLU A 116 -71.77 -122.03 REMARK 500 1 TRP A 117 -81.33 -68.63 REMARK 500 1 GLN A 121 -62.43 62.77 REMARK 500 1 VAL A 141 55.00 -172.06 REMARK 500 1 PRO B 207 -89.81 -74.99 REMARK 500 1 THR B 208 -54.50 80.01 REMARK 500 1 ALA B 209 150.76 85.80 REMARK 500 2 VAL A 12 -100.68 -143.19 REMARK 500 2 SER A 13 -59.70 70.39 REMARK 500 2 LYS A 33 -8.62 86.09 REMARK 500 2 PHE A 44 -54.57 -147.41 REMARK 500 2 ASN A 45 90.25 -59.27 REMARK 500 2 ASN A 66 -178.21 169.08 REMARK 500 2 LEU A 77 -167.82 -76.87 REMARK 500 2 THR A 79 58.15 -177.28 REMARK 500 2 TYR A 80 150.40 179.20 REMARK 500 2 TYR A 82 32.21 -162.46 REMARK 500 2 ASN A 83 165.89 174.61 REMARK 500 2 ILE A 86 94.46 49.84 REMARK 500 2 THR A 92 -140.42 -82.06 REMARK 500 2 LYS A 101 47.52 -92.83 REMARK 500 2 HIS A 102 -48.48 -162.35 REMARK 500 2 ALA A 105 39.26 172.47 REMARK 500 2 ASN A 106 15.97 -145.05 REMARK 500 2 LEU A 111 147.51 -39.78 REMARK 500 2 TYR A 113 -79.01 57.33 REMARK 500 2 GLU A 116 -67.88 -133.07 REMARK 500 2 TRP A 117 -77.80 -69.27 REMARK 500 2 LYS A 118 40.63 39.67 REMARK 500 2 GLN A 121 -64.30 61.39 REMARK 500 2 VAL A 141 61.80 -171.22 REMARK 500 2 ARG A 144 161.08 56.81 REMARK 500 2 PRO B 207 -87.50 -74.94 REMARK 500 2 THR B 208 -56.22 79.24 REMARK 500 2 ALA B 209 152.37 87.00 REMARK 500 2 GLU B 212 -146.31 -100.00 REMARK 500 REMARK 500 THIS ENTRY HAS 559 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KPP RELATED DB: PDB REMARK 900 STRUCTURE OF THE TSG101 UEV DOMAIN REMARK 900 RELATED ID: 1KPQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE TSG101 UEV DOMAIN REMARK 900 RELATED ID: 1M4Q RELATED DB: PDB REMARK 900 STRUCTURE OF THE TSG101 UEV DOMAIN IN COMPLEX WITH A HIV-1 PTAP " REMARK 900 LATE DOMAIN" PEPTIDE DBREF 1M4P A 1 145 UNP Q99816 TS101_HUMAN 1 145 DBREF 1M4P B 205 213 UNP Q9IF21 Q9IF21_9HIV1 453 461 SEQRES 1 A 145 MET ALA VAL SER GLU SER GLN LEU LYS LYS MET VAL SER SEQRES 2 A 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 A 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 A 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 A 145 MET ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 A 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 A 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 A 145 THR SER SER MET THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 A 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 A 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 A 145 MET ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 A 145 ARG PRO SEQRES 1 B 9 PRO GLU PRO THR ALA PRO PRO GLU GLU HELIX 1 1 VAL A 3 SER A 13 1 11 HELIX 2 2 TYR A 17 TYR A 32 1 16 HELIX 3 3 ASP A 123 GLU A 138 1 16 SHEET 1 A 4 LEU A 35 VAL A 43 0 SHEET 2 A 4 SER A 49 PRO A 62 -1 O ASN A 54 N VAL A 38 SHEET 3 A 4 THR A 67 LEU A 76 -1 O ILE A 70 N ILE A 59 SHEET 4 A 4 CYS A 87 PHE A 88 -1 O PHE A 88 N CYS A 73 CISPEP 1 TYR A 80 PRO A 81 1 -0.01 CISPEP 2 HIS A 119 PRO A 120 1 0.01 CISPEP 3 TYR A 80 PRO A 81 2 -0.01 CISPEP 4 HIS A 119 PRO A 120 2 -0.07 CISPEP 5 TYR A 80 PRO A 81 3 0.02 CISPEP 6 HIS A 119 PRO A 120 3 -0.01 CISPEP 7 TYR A 80 PRO A 81 4 0.02 CISPEP 8 HIS A 119 PRO A 120 4 -0.05 CISPEP 9 TYR A 80 PRO A 81 5 -0.08 CISPEP 10 HIS A 119 PRO A 120 5 0.05 CISPEP 11 TYR A 80 PRO A 81 6 0.00 CISPEP 12 HIS A 119 PRO A 120 6 -0.04 CISPEP 13 TYR A 80 PRO A 81 7 0.09 CISPEP 14 HIS A 119 PRO A 120 7 -0.06 CISPEP 15 TYR A 80 PRO A 81 8 -0.02 CISPEP 16 HIS A 119 PRO A 120 8 -0.06 CISPEP 17 TYR A 80 PRO A 81 9 0.06 CISPEP 18 HIS A 119 PRO A 120 9 0.09 CISPEP 19 TYR A 80 PRO A 81 10 -0.03 CISPEP 20 HIS A 119 PRO A 120 10 0.03 CISPEP 21 TYR A 80 PRO A 81 11 -0.04 CISPEP 22 HIS A 119 PRO A 120 11 0.13 CISPEP 23 TYR A 80 PRO A 81 12 -0.06 CISPEP 24 HIS A 119 PRO A 120 12 0.03 CISPEP 25 TYR A 80 PRO A 81 13 0.09 CISPEP 26 HIS A 119 PRO A 120 13 -0.01 CISPEP 27 TYR A 80 PRO A 81 14 0.05 CISPEP 28 HIS A 119 PRO A 120 14 -0.03 CISPEP 29 TYR A 80 PRO A 81 15 -0.04 CISPEP 30 HIS A 119 PRO A 120 15 0.01 CISPEP 31 TYR A 80 PRO A 81 16 0.01 CISPEP 32 HIS A 119 PRO A 120 16 0.01 CISPEP 33 TYR A 80 PRO A 81 17 -0.08 CISPEP 34 HIS A 119 PRO A 120 17 0.05 CISPEP 35 TYR A 80 PRO A 81 18 0.04 CISPEP 36 HIS A 119 PRO A 120 18 -0.02 CISPEP 37 TYR A 80 PRO A 81 19 -0.02 CISPEP 38 HIS A 119 PRO A 120 19 -0.06 CISPEP 39 TYR A 80 PRO A 81 20 0.08 CISPEP 40 HIS A 119 PRO A 120 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1