HEADER PROTEIN TRANSPORT 16-JUL-02 1M6N TITLE CRYSTAL STRUCTURE OF THE SECA TRANSLOCATION ATPASE FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SECA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SECA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: DIV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-DIV KEYWDS PROTEIN TRANSLOCATION; ATPASE; TRANSMEMBRANE TRANSPORT; HELICASE KEYWDS 2 FAMILY STRUCTURE; MECHANOCHEMISTY, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.F.HUNT,S.WEINKAUF,L.HENRY,J.J.FAK,P.MCNICHOLAS,D.B.OLIVER, AUTHOR 2 J.DEISENHOFER REVDAT 4 14-FEB-24 1M6N 1 REMARK REVDAT 3 13-JUL-11 1M6N 1 VERSN REVDAT 2 24-FEB-09 1M6N 1 VERSN REVDAT 1 20-SEP-02 1M6N 0 JRNL AUTH J.F.HUNT,S.WEINKAUF,L.HENRY,J.J.FAK,P.MCNICHOLAS,D.B.OLIVER, JRNL AUTH 2 J.DEISENHOFER JRNL TITL NUCLEOTIDE CONTROL OF INTERDOMAIN INTERACTIONS IN THE JRNL TITL 2 CONFORMATIONAL REACTION CYCLE OF SECA JRNL REF SCIENCE V. 297 2018 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12242434 JRNL DOI 10.1126/SCIENCE.1074424 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.F.HUNT,J.DEISENHOFER REMARK 1 TITL PING-PONG CROSS-VALIDATION IN REAL SPACE: A METHOD TO REMARK 1 TITL 2 INCREASE THE PHASING POWER OF A PARTIAL MODEL WITHOUT RISK REMARK 1 TITL 3 OF PHASE BIAS REMARK 1 REF TO BE PUBLISHED 2002 REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH S.WEINKAUF,J.F.HUNT,J.SCHEURING,L.HENRY,J.J.FAK,D.B.OLIVER, REMARK 1 AUTH 2 J.DEISENHOFER REMARK 1 TITL CONFORMATIONAL STABILIZATION AND CRYSTALLIZATION OF THE SECA REMARK 1 TITL 2 TRANSLOCATION ATPASE FROM BACILLUS SUBTILIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 559 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444901001202 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2936891.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.4 REMARK 3 NUMBER OF REFLECTIONS : 32620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3413 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 179 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.54000 REMARK 3 B22 (A**2) : -6.54000 REMARK 3 B33 (A**2) : 13.07000 REMARK 3 B12 (A**2) : 2.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.66 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 7.190 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 11.260; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 40.710; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 39.940; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARH REMARK 3 PARAMETER FILE 2 : PAR REMARK 3 PARAMETER FILE 3 : PARA REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH REMARK 3 TOPOLOGY FILE 2 : TOP REMARK 3 TOPOLOGY FILE 3 : TOPH REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.986 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 30% GLYCEROL, 1 REMARK 280 MM DTT, 100 MM BES, PH 7.0, VAPOR DIFFUSION, HANGING DROP AT 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.11667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.23333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 100.23333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.11667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE OTHER SUBUNIT IN THE PHYSIOLOGICAL DIMER IS GENERATED REMARK 300 BY 1-Y, 1-X, 2/3-Z (4_665) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -261.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 65.41650 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 113.30470 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 100.23333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 249 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 -57.72 -12.34 REMARK 500 GLU A 194 -6.31 -57.62 REMARK 500 HIS A 202 -67.49 -90.82 REMARK 500 ILE A 212 -70.53 -74.38 REMARK 500 ILE A 214 -74.62 -117.29 REMARK 500 GLU A 216 25.13 -71.71 REMARK 500 ALA A 228 57.12 -58.62 REMARK 500 LYS A 229 32.28 37.44 REMARK 500 SER A 230 10.95 -61.95 REMARK 500 LEU A 233 -73.85 -59.43 REMARK 500 THR A 243 -66.42 -163.62 REMARK 500 LEU A 244 2.64 -56.44 REMARK 500 LYS A 248 49.03 -100.66 REMARK 500 ASP A 249 92.74 179.60 REMARK 500 THR A 256 43.26 85.38 REMARK 500 LEU A 261 -26.94 -16.95 REMARK 500 PHE A 273 46.76 70.47 REMARK 500 ILE A 275 46.86 37.74 REMARK 500 ASP A 276 -111.63 76.64 REMARK 500 LEU A 278 97.73 -57.13 REMARK 500 VAL A 281 -70.19 -79.59 REMARK 500 ALA A 285 -77.49 -81.89 REMARK 500 LYS A 302 -86.46 -40.64 REMARK 500 ASP A 303 41.17 -93.44 REMARK 500 GLN A 312 -156.38 86.42 REMARK 500 PHE A 319 -23.10 74.18 REMARK 500 MET A 324 103.09 -50.84 REMARK 500 LYS A 325 -99.68 -23.89 REMARK 500 ASN A 347 71.67 -119.36 REMARK 500 ALA A 374 -31.63 -145.43 REMARK 500 ASN A 383 -70.54 -67.70 REMARK 500 MET A 427 32.96 -78.28 REMARK 500 THR A 428 -12.64 -149.94 REMARK 500 ALA A 461 78.03 14.85 REMARK 500 ASN A 463 79.21 35.79 REMARK 500 ALA A 474 6.17 -68.71 REMARK 500 ASN A 485 46.80 72.21 REMARK 500 ALA A 487 -32.99 -30.71 REMARK 500 LEU A 502 2.22 -69.02 REMARK 500 ALA A 506 103.09 74.50 REMARK 500 ARG A 528 84.23 -45.51 REMARK 500 GLN A 529 77.36 68.94 REMARK 500 ARG A 548 -6.35 -164.58 REMARK 500 ALA A 551 48.39 -92.14 REMARK 500 ASP A 564 0.75 -57.39 REMARK 500 THR A 567 -74.54 30.25 REMARK 500 PRO A 568 97.49 -62.98 REMARK 500 ASN A 622 51.29 -105.02 REMARK 500 ARG A 624 -48.16 -27.77 REMARK 500 THR A 643 39.47 -144.04 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M74 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF B.SUBTILIS SECA WITH ADP DBREF 1M6N A 1 802 UNP P28366 SECA_BACSU 1 802 SEQRES 1 A 802 MET LEU GLY ILE LEU ASN LYS MET PHE ASP PRO THR LYS SEQRES 2 A 802 ARG THR LEU ASN ARG TYR GLU LYS ILE ALA ASN ASP ILE SEQRES 3 A 802 ASP ALA ILE ARG GLY ASP TYR GLU ASN LEU SER ASP ASP SEQRES 4 A 802 ALA LEU LYS HIS LYS THR ILE GLU PHE LYS GLU ARG LEU SEQRES 5 A 802 GLU LYS GLY ALA THR THR ASP ASP LEU LEU VAL GLU ALA SEQRES 6 A 802 PHE ALA VAL VAL ARG GLU ALA SER ARG ARG VAL THR GLY SEQRES 7 A 802 MET PHE PRO PHE LYS VAL GLN LEU MET GLY GLY VAL ALA SEQRES 8 A 802 LEU HIS ASP GLY ASN ILE ALA GLU MET LYS THR GLY GLU SEQRES 9 A 802 GLY LYS THR LEU THR SER THR LEU PRO VAL TYR LEU ASN SEQRES 10 A 802 ALA LEU THR GLY LYS GLY VAL HIS VAL VAL THR VAL ASN SEQRES 11 A 802 GLU TYR LEU ALA SER ARG ASP ALA GLU GLN MET GLY LYS SEQRES 12 A 802 ILE PHE GLU PHE LEU GLY LEU THR VAL GLY LEU ASN LEU SEQRES 13 A 802 ASN SER MET SER LYS ASP GLU LYS ARG GLU ALA TYR ALA SEQRES 14 A 802 ALA ASP ILE THR TYR SER THR ASN ASN GLU LEU GLY PHE SEQRES 15 A 802 ASP TYR LEU ARG ASP ASN MET VAL LEU TYR LYS GLU GLN SEQRES 16 A 802 MET VAL GLN ARG PRO LEU HIS PHE ALA VAL ILE ASP GLU SEQRES 17 A 802 VAL ASP SER ILE LEU ILE ASP GLU ALA ARG THR PRO LEU SEQRES 18 A 802 ILE ILE SER GLY GLN ALA ALA LYS SER THR LYS LEU TYR SEQRES 19 A 802 VAL GLN ALA ASN ALA PHE VAL ARG THR LEU LYS ALA GLU SEQRES 20 A 802 LYS ASP TYR THR TYR ASP ILE LYS THR LYS ALA VAL GLN SEQRES 21 A 802 LEU THR GLU GLU GLY MET THR LYS ALA GLU LYS ALA PHE SEQRES 22 A 802 GLY ILE ASP ASN LEU PHE ASP VAL LYS HIS VAL ALA LEU SEQRES 23 A 802 ASN HIS HIS ILE ASN GLN ALA LEU LYS ALA HIS VAL ALA SEQRES 24 A 802 MET GLN LYS ASP VAL ASP TYR VAL VAL GLU ASP GLY GLN SEQRES 25 A 802 VAL VAL ILE VAL ASP SER PHE THR GLY ARG LEU MET LYS SEQRES 26 A 802 GLY ARG ARG TYR SER GLU GLY LEU HIS GLN ALA ILE GLU SEQRES 27 A 802 ALA LYS GLU GLY LEU GLU ILE GLN ASN GLU SER MET THR SEQRES 28 A 802 LEU ALA THR ILE THR PHE GLN ASN TYR PHE ARG MET TYR SEQRES 29 A 802 GLU LYS LEU ALA GLY MET THR GLY THR ALA LYS THR GLU SEQRES 30 A 802 GLU GLU GLU PHE ARG ASN ILE TYR ASN MET GLN VAL VAL SEQRES 31 A 802 THR ILE PRO THR ASN ARG PRO VAL VAL ARG ASP ASP ARG SEQRES 32 A 802 PRO ASP LEU ILE TYR ARG THR MET GLU GLY LYS PHE LYS SEQRES 33 A 802 ALA VAL ALA GLU ASP VAL ALA GLN ARG TYR MET THR GLY SEQRES 34 A 802 GLN PRO VAL LEU VAL GLY THR VAL ALA VAL GLU THR SER SEQRES 35 A 802 GLU LEU ILE SER LYS LEU LEU LYS ASN LYS GLY ILE PRO SEQRES 36 A 802 HIS GLN VAL LEU ASN ALA LYS ASN HIS GLU ARG GLU ALA SEQRES 37 A 802 GLN ILE ILE GLU GLU ALA GLY GLN LYS GLY ALA VAL THR SEQRES 38 A 802 ILE ALA THR ASN MET ALA GLY ARG GLY THR ASP ILE LYS SEQRES 39 A 802 LEU GLY GLU GLY VAL LYS GLU LEU GLY GLY LEU ALA VAL SEQRES 40 A 802 VAL GLY THR GLU ARG HIS GLU SER ARG ARG ILE ASP ASN SEQRES 41 A 802 GLN LEU ARG GLY ARG SER GLY ARG GLN GLY ASP PRO GLY SEQRES 42 A 802 ILE THR GLN PHE TYR LEU SER MET GLU ASP GLU LEU MET SEQRES 43 A 802 ARG ARG PHE GLY ALA GLU ARG THR MET ALA MET LEU ASP SEQRES 44 A 802 ARG PHE GLY MET ASP ASP SER THR PRO ILE GLN SER LYS SEQRES 45 A 802 MET VAL SER ARG ALA VAL GLU SER SER GLN LYS ARG VAL SEQRES 46 A 802 GLU GLY ASN ASN PHE ASP SER ARG LYS GLN LEU LEU GLN SEQRES 47 A 802 TYR ASP ASP VAL LEU ARG GLN GLN ARG GLU VAL ILE TYR SEQRES 48 A 802 LYS GLN ARG PHE GLU VAL ILE ASP SER GLU ASN LEU ARG SEQRES 49 A 802 GLU ILE VAL GLU ASN MET ILE LYS SER SER LEU GLU ARG SEQRES 50 A 802 ALA ILE ALA ALA TYR THR PRO ARG GLU GLU LEU PRO GLU SEQRES 51 A 802 GLU TRP LYS LEU ASP GLY LEU VAL ASP LEU ILE ASN THR SEQRES 52 A 802 THR TYR LEU ASP GLU GLY ALA LEU GLU LYS SER ASP ILE SEQRES 53 A 802 PHE GLY LYS GLU PRO ASP GLU MET LEU GLU LEU ILE MET SEQRES 54 A 802 ASP ARG ILE ILE THR LYS TYR ASN GLU LYS GLU GLU GLN SEQRES 55 A 802 PHE GLY LYS GLU GLN MET ARG GLU PHE GLU LYS VAL ILE SEQRES 56 A 802 VAL LEU ARG ALA VAL ASP SER LYS TRP MET ASP HIS ILE SEQRES 57 A 802 ASP ALA MET ASP GLN LEU ARG GLN GLY ILE HIS LEU ARG SEQRES 58 A 802 ALA TYR ALA GLN THR ASN PRO LEU ARG GLU TYR GLN MET SEQRES 59 A 802 GLU GLY PHE ALA MET PHE GLU HIS MET ILE GLU SER ILE SEQRES 60 A 802 GLU ASP GLU VAL ALA LYS PHE VAL MET LYS ALA GLU ILE SEQRES 61 A 802 GLU ASN ASN LEU GLU ARG GLU GLU VAL VAL GLN GLY GLN SEQRES 62 A 802 THR THR ALA HIS GLN PRO GLN GLU GLY HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 HOH *45(H2 O) HELIX 1 1 GLY A 3 MET A 8 5 6 HELIX 2 2 PHE A 9 ILE A 29 1 21 HELIX 3 3 ARG A 30 ASN A 35 1 6 HELIX 4 4 SER A 37 LYS A 54 1 18 HELIX 5 5 THR A 57 GLY A 78 1 22 HELIX 6 6 PHE A 82 GLY A 95 1 14 HELIX 7 7 GLY A 105 LEU A 119 1 15 HELIX 8 8 ASN A 130 LEU A 148 1 19 HELIX 9 9 SER A 160 ALA A 170 1 11 HELIX 10 10 ASN A 177 ASN A 188 1 12 HELIX 11 11 TYR A 192 MET A 196 5 5 HELIX 12 12 GLU A 208 ILE A 214 1 7 HELIX 13 13 ASP A 215 ARG A 218 5 4 HELIX 14 14 SER A 230 ARG A 242 1 13 HELIX 15 15 GLU A 263 LYS A 268 1 6 HELIX 16 16 ALA A 269 PHE A 273 5 5 HELIX 17 17 VAL A 281 ALA A 299 1 19 HELIX 18 18 GLN A 301 ASP A 305 1 5 HELIX 19 19 TYR A 329 GLU A 331 5 3 HELIX 20 20 GLY A 332 GLU A 341 1 10 HELIX 21 21 THR A 356 ARG A 362 1 7 HELIX 22 22 ALA A 374 THR A 376 5 3 HELIX 23 23 GLU A 377 ASN A 386 1 10 HELIX 24 24 THR A 410 MET A 427 1 18 HELIX 25 25 ALA A 438 LYS A 452 1 15 HELIX 26 26 ASN A 463 GLU A 473 1 11 HELIX 27 27 ALA A 474 GLN A 476 5 3 HELIX 28 28 GLY A 498 GLY A 503 5 6 HELIX 29 29 SER A 515 ARG A 525 1 11 HELIX 30 30 ALA A 551 PHE A 561 1 11 HELIX 31 31 SER A 571 ASP A 619 1 49 HELIX 32 32 LEU A 623 TYR A 642 1 20 HELIX 33 33 LEU A 648 TRP A 652 5 5 HELIX 34 34 ASP A 655 TYR A 665 1 11 HELIX 35 35 GLU A 680 PHE A 703 1 24 HELIX 36 36 GLU A 706 ARG A 735 1 30 HELIX 37 37 ASN A 747 ALA A 778 1 32 SHEET 1 A 7 VAL A 152 LEU A 154 0 SHEET 2 A 7 ILE A 172 THR A 176 1 O ILE A 172 N GLY A 153 SHEET 3 A 7 VAL A 124 THR A 128 1 N VAL A 126 O THR A 173 SHEET 4 A 7 PHE A 203 ASP A 207 1 O ASP A 207 N VAL A 127 SHEET 5 A 7 LYS A 366 THR A 371 1 O ALA A 368 N ILE A 206 SHEET 6 A 7 ILE A 97 GLU A 99 1 N ALA A 98 O GLY A 369 SHEET 7 A 7 VAL A 389 THR A 391 1 O VAL A 390 N GLU A 99 SHEET 1 B 3 SER A 349 ILE A 355 0 SHEET 2 B 3 LEU A 221 GLN A 226 -1 N ILE A 223 O LEU A 352 SHEET 3 B 3 THR A 794 HIS A 797 -1 O HIS A 797 N ILE A 222 SHEET 1 C 2 TYR A 306 VAL A 307 0 SHEET 2 C 2 VAL A 314 ILE A 315 -1 O VAL A 314 N VAL A 307 SHEET 1 D 3 LEU A 406 TYR A 408 0 SHEET 2 D 3 ILE A 534 SER A 540 1 O LEU A 539 N LEU A 406 SHEET 3 D 3 ASP A 401 ASP A 402 1 N ASP A 401 O THR A 535 SHEET 1 E 6 LEU A 406 TYR A 408 0 SHEET 2 E 6 ILE A 534 SER A 540 1 O LEU A 539 N LEU A 406 SHEET 3 E 6 VAL A 507 GLY A 509 1 N GLY A 509 O GLN A 536 SHEET 4 E 6 VAL A 432 THR A 436 1 N LEU A 433 O VAL A 508 SHEET 5 E 6 VAL A 480 THR A 484 1 O ALA A 483 N THR A 436 SHEET 6 E 6 GLN A 457 LEU A 459 1 N LEU A 459 O ILE A 482 SITE 1 AC1 7 GLY A 103 GLU A 104 GLY A 105 LYS A 106 SITE 2 AC1 7 THR A 107 ASP A 492 HOH A1135 SITE 1 AC2 6 THR A 102 LYS A 106 GLU A 208 GLY A 372 SITE 2 AC2 6 ARG A 489 ARG A 525 SITE 1 AC3 5 THR A 58 THR A 120 LYS A 122 HIS A 202 SITE 2 AC3 5 HOH A1101 SITE 1 AC4 3 ASN A 130 GLU A 131 HIS A 464 SITE 1 AC5 3 LEU A 596 ARG A 735 GLN A 736 SITE 1 AC6 4 TYR A 408 ARG A 409 THR A 410 THR A 567 SITE 1 AC7 5 ASP A 215 GLU A 216 ARG A 218 THR A 219 SITE 2 AC7 5 GLN A 798 CRYST1 130.833 130.833 150.350 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007643 0.004413 0.000000 0.00000 SCALE2 0.000000 0.008826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006651 0.00000