HEADER RNA 24-JUL-02 1M82 TITLE SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (25-MER): THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A COMPND 3 VIRUS; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CONSERVED INTERNAL LOOP OF THE COMPLEMENTARY RNA COMPND 7 PROMOTER OF THE INFLUENZA A VIRUS SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN COMPLEMENTARY RNA SOURCE 4 OF THE INFLUENZA A VIRUS GENOME SEGMENTS. KEYWDS ASYMMETRIC INTERNAL LOOP, A-FORM HELIX, RNA EXPDTA SOLUTION NMR NUMMDL 31 AUTHOR C.-J.PARK,S.-H.BAE,M.-K.LEE,G.VARANI,B.-S.CHOI REVDAT 3 23-FEB-22 1M82 1 REMARK REVDAT 2 24-FEB-09 1M82 1 VERSN REVDAT 1 03-JUN-03 1M82 0 JRNL AUTH C.-J.PARK,S.-H.BAE,M.-K.LEE,G.VARANI,B.-S.CHOI JRNL TITL SOLUTION STRUCTURE OF THE INFLUENZA A VIRUS CRNA PROMOTER: JRNL TITL 2 IMPLICATIONS FOR DIFFERENTIAL RECOGNITION OF VIRAL PROMOTER JRNL TITL 3 STRUCTURES BY RNA-DEPENDENT RNA POLYMERASE JRNL REF NUCLEIC ACIDS RES. V. 31 2824 2003 JRNL REFN ISSN 0305-1048 JRNL PMID 12771209 JRNL DOI 10.1093/NAR/GKG387 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 95, CNS 1.0 REMARK 3 AUTHORS : BIOSYM,INC. (FELIX), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 834 RESTRAINTS, 592 ARE NOE-DERIVED DISTANCE RESTRAINTS, 140 REMARK 3 TORSION ANGLE RESTRAINTS, 54 PLANARITY RESTRAINTS AND 48 BASE- REMARK 3 PAIR RESTRAINTS. REMARK 4 REMARK 4 1M82 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016712. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 280; 290; 310 REMARK 210 PH : 6.0; 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 20MM NAPI 0.1MM EDTA; 20MM NAPI REMARK 210 0.1MM EDTA; 20MM NAPI 0.1MM EDTA; REMARK 210 20MM NAPI 0.1MM EDTA REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM INFLUENZA A VIRUS CRNA REMARK 210 PROMOTER (25MER) 20MM PHOSPHATE REMARK 210 BUFFER(PH 6.0)0.1MM EDTA; 1MM REMARK 210 INFLUENZA A VIRUS CRNA PROMOTER REMARK 210 (25MER) U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER(PH 6.0)0.1MM REMARK 210 EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 HETCOR; 3D 13C NOESY-HSQC; 3D REMARK 210 HCCH-COSY; 3D HCCH-COSY-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 21 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 3D HETERONUCLEAR NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL DBREF 1M82 A 1 25 PDB 1M82 1M82 1 25 SEQRES 1 A 25 G G A A G C A G G C U U C SEQRES 2 A 25 G G C C U U G U U U C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1