HEADER IMMUNOGLOBULIN 14-JAN-92 1MAM TITLE CRYSTAL STRUCTURE TO 2.45 A RESOLUTION OF A MONOCLONAL FAB TITLE 2 SPECIFIC FOR THE BRUCELLA A CELL WALL POLYSACCHARIDE TITLE 3 ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.ROSE REVDAT 3 25-AUG-09 1MAM 1 SOURCE REVDAT 2 24-FEB-09 1MAM 1 VERSN REVDAT 1 31-OCT-93 1MAM 0 JRNL AUTH D.R.ROSE,M.PRZYBYLSKA,R.J.TO,C.S.KAYDEN,R.P.OOMEN, JRNL AUTH 2 E.VORBERG,N.M.YOUNG,D.R.BUNDLE JRNL TITL CRYSTAL STRUCTURE TO 2.45 A RESOLUTION OF A JRNL TITL 2 MONOCLONAL FAB SPECIFIC FOR THE BRUCELLA A CELL JRNL TITL 3 WALL POLYSACCHARIDE ANTIGEN. JRNL REF PROTEIN SCI. V. 2 1106 1993 JRNL REFN ISSN 0961-8368 JRNL PMID 8358294 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MAM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 166 O THR H 188 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY L 16 N GLY L 16 CA 0.126 REMARK 500 GLY L 16 CA GLY L 16 C 0.215 REMARK 500 LEU L 15 C GLY L 16 N 0.169 REMARK 500 VAL L 44 N VAL L 44 CA 0.157 REMARK 500 SER L 52 N SER L 52 CA 0.296 REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.085 REMARK 500 ARG L 211 C ARG L 211 O 0.208 REMARK 500 ASP H 101 C PRO H 102 N -0.288 REMARK 500 CYS H 134 CA CYS H 134 CB -0.157 REMARK 500 GLY H 135 CA GLY H 135 C 0.309 REMARK 500 SER H 167 N SER H 167 CA 0.174 REMARK 500 SER H 166 C SER H 167 N 0.213 REMARK 500 HIS H 170 NE2 HIS H 170 CD2 -0.068 REMARK 500 VAL H 199 CA VAL H 199 CB 0.127 REMARK 500 HIS H 205 NE2 HIS H 205 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET L 4 CG - SD - CE ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU L 15 CA - C - N ANGL. DEV. = -34.8 DEGREES REMARK 500 LEU L 15 O - C - N ANGL. DEV. = 34.1 DEGREES REMARK 500 GLY L 16 C - N - CA ANGL. DEV. = 23.2 DEGREES REMARK 500 ASP L 17 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG L 24 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP L 35 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL L 44 N - CA - CB ANGL. DEV. = 18.6 DEGREES REMARK 500 VAL L 44 C - N - CA ANGL. DEV. = 44.5 DEGREES REMARK 500 SER L 52 N - CA - CB ANGL. DEV. = 25.4 DEGREES REMARK 500 SER L 52 C - N - CA ANGL. DEV. = -19.6 DEGREES REMARK 500 ARG L 53 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP L 148 CD1 - CG - CD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP L 148 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP L 163 CB - CG - CD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 TRP L 163 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP L 163 CG - CD2 - CE3 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU L 181 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASN L 212 N - CA - CB ANGL. DEV. = 24.8 DEGREES REMARK 500 ASN L 212 N - CA - C ANGL. DEV. = -28.8 DEGREES REMARK 500 ARG L 211 O - C - N ANGL. DEV. = -27.3 DEGREES REMARK 500 VAL H 2 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 SER H 7 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 SER H 7 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 LEU H 18 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG H 38 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP H 56 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP H 56 C - N - CA ANGL. DEV. = 42.2 DEGREES REMARK 500 TYR H 58 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG H 69 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ILE H 80 N - CA - C ANGL. DEV. = 26.8 DEGREES REMARK 500 MET H 85 CG - SD - CE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG H 89 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP H 101 O - C - N ANGL. DEV. = -20.7 DEGREES REMARK 500 TYR H 103 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR H 103 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TRP H 109 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP H 109 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 GLY H 135 CA - C - O ANGL. DEV. = -48.5 DEGREES REMARK 500 SER H 140 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 VAL H 142 C - N - CA ANGL. DEV. = 24.3 DEGREES REMARK 500 GLU H 154 CA - C - N ANGL. DEV. = -20.2 DEGREES REMARK 500 GLU H 154 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 8 113.40 67.22 REMARK 500 LEU L 15 101.19 63.23 REMARK 500 VAL L 44 94.07 56.17 REMARK 500 THR L 51 12.32 50.68 REMARK 500 SER L 52 -34.78 -179.13 REMARK 500 SER L 60 -8.72 -55.05 REMARK 500 GLU L 81 -4.83 -56.48 REMARK 500 SER L 127 46.79 -104.48 REMARK 500 ASN L 138 71.22 44.87 REMARK 500 THR L 200 1.80 -65.94 REMARK 500 ASN L 212 -47.30 -158.64 REMARK 500 GLU L 213 -36.81 -36.74 REMARK 500 LYS H 43 165.55 -45.00 REMARK 500 ALA H 55 -51.35 -178.65 REMARK 500 TYR H 58 51.60 -109.69 REMARK 500 THR H 137 136.60 -171.62 REMARK 500 THR H 138 -160.52 -177.52 REMARK 500 SER H 141 104.02 63.70 REMARK 500 SER H 155 99.67 78.89 REMARK 500 TRP H 160 -84.03 -125.25 REMARK 500 ASN H 161 139.47 -178.78 REMARK 500 SER H 164 16.05 -48.90 REMARK 500 SER H 166 -72.67 -141.35 REMARK 500 SER H 167 78.94 -55.91 REMARK 500 TRP H 194 94.21 51.12 REMARK 500 SER H 208 5.98 56.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR L 43 VAL L 44 34.34 REMARK 500 SER H 79 ILE H 80 139.40 REMARK 500 GLY H 104 PRO H 105 -146.56 REMARK 500 GLY H 135 ASP H 136 -114.61 REMARK 500 SER H 141 VAL H 142 140.18 REMARK 500 SER H 155 VAL H 156 122.63 REMARK 500 SER H 166 SER H 167 -96.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 181 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG L 211 -32.97 REMARK 500 GLY H 135 36.63 REMARK 500 SER H 166 14.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 THE RESIDUE NUMBERING IS SEQUENTIAL WITHIN EACH CHAIN. THE REMARK 999 SEQUENTIAL NUMBERING OF THE LIGHT CHAIN CORRESPONDS TO THE REMARK 999 KABAT NUMBERING SCHEME. THE FOLLOWING IS THE RELATIONSHIP REMARK 999 OF THE SEQUENTIAL NUMBERING SCHEME OF THE HEAVY CHAIN TO REMARK 999 THE KABAT NUMBERING SCHEME: REMARK 999 REMARK 999 1 - 52 1 - 52 REMARK 999 53 - 55 52A- 52C REMARK 999 56 - 85 53 - 82 REMARK 999 86 - 88 82A- 82C REMARK 999 89 - 217 83 - END DBREF 1MAM H 120 217 UNP P01867 GCBM_MOUSE 1 98 DBREF 1MAM L 1 214 PDB 1MAM 1MAM 1 214 SEQRES 1 L 214 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE TYR ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 214 ASN GLN GLU ASP MET ALA THR TYR ILE CYS GLN GLN GLY SEQRES 8 L 214 ASN THR LEU PRO PHE THR PHE GLY SER GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 217 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 217 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 H 217 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 H 217 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 H 217 ASN LYS ALA ASP GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 H 217 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 H 217 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 H 217 ASP SER ALA THR TYR TYR CYS THR ARG ASP PRO TYR GLY SEQRES 9 H 217 PRO ALA ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 217 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 217 ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 217 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL SEQRES 13 H 217 THR VAL THR TRP ASN SER GLY SER LEU SER SER SER VAL SEQRES 14 H 217 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 H 217 MET SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 217 SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SEQRES 17 H 217 SER THR THR VAL ASP LYS LYS LEU GLU HELIX 1 1 TYR L 50 SER L 52 5 3 HELIX 2 2 ASN L 79 MET L 83 5 5 HELIX 3 3 SER L 121 SER L 127 1 7 HELIX 4 4 LYS L 183 ARG L 188 1 6 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 ARG H 89 SER H 93 5 5 SHEET 1 A 4 MET L 4 THR L 5 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 N TYR L 71 O CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 B 5 ARG L 53 LEU L 54 0 SHEET 2 B 5 VAL L 44 TYR L 49 -1 N TYR L 49 O ARG L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 B 5 ALA L 84 GLN L 90 -1 O THR L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 ARG L 53 LEU L 54 0 SHEET 2 C 6 VAL L 44 TYR L 49 -1 N TYR L 49 O ARG L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 C 6 ALA L 84 GLN L 90 -1 O THR L 85 N GLN L 38 SHEET 5 C 6 THR L 102 ILE L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 SER L 10 ALA L 13 1 O LEU L 11 N GLU L 105 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ILE L 144 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 E 4 TYR L 192 HIS L 198 -1 N THR L 193 O LYS L 149 SHEET 4 E 4 ILE L 205 PHE L 209 -1 N ILE L 205 O ALA L 196 SHEET 1 F 4 LYS H 3 GLU H 6 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 N ALA H 23 O VAL H 5 SHEET 3 F 4 ILE H 80 MET H 85 -1 O LEU H 81 N CYS H 22 SHEET 4 F 4 PHE H 70 ASP H 75 -1 O THR H 71 N GLN H 84 SHEET 1 G 5 THR H 60 TYR H 62 0 SHEET 2 G 5 GLU H 46 ILE H 51 -1 O PHE H 50 N GLU H 61 SHEET 3 G 5 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 G 5 ALA H 94 ARG H 100 -1 O THR H 95 N GLN H 39 SHEET 5 G 5 TYR H 108 TRP H 109 -1 O TYR H 108 N ARG H 100 SHEET 1 H 6 THR H 60 TYR H 62 0 SHEET 2 H 6 GLU H 46 ILE H 51 -1 O PHE H 50 N GLU H 61 SHEET 3 H 6 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 H 6 ALA H 94 ARG H 100 -1 O THR H 95 N GLN H 39 SHEET 5 H 6 THR H 113 VAL H 117 -1 O THR H 113 N TYR H 96 SHEET 6 H 6 GLY H 10 VAL H 12 1 O GLY H 10 N THR H 116 SHEET 1 I 4 SER H 126 LEU H 130 0 SHEET 2 I 4 VAL H 142 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 I 4 LEU H 180 VAL H 189 -1 N TYR H 181 O TYR H 151 SHEET 4 I 4 HIS H 170 GLN H 177 -1 N HIS H 170 O SER H 186 SHEET 1 J 3 THR H 157 THR H 159 0 SHEET 2 J 3 THR H 200 HIS H 205 -1 O SER H 202 N THR H 159 SHEET 3 J 3 SER H 209 LYS H 214 -1 O SER H 209 N HIS H 205 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 98 1555 1555 2.01 SSBOND 4 CYS H 146 CYS H 201 1555 1555 1.99 CISPEP 1 LEU L 94 PRO L 95 0 -2.58 CISPEP 2 TYR L 140 PRO L 141 0 -13.98 CISPEP 3 PHE H 152 PRO H 153 0 -8.63 CISPEP 4 TRP H 194 PRO H 195 0 3.09 CRYST1 75.730 126.820 46.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021358 0.00000