data_1MC9 # _entry.id 1MC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1MC9 RCSB RCSB016819 WWPDB D_1000016819 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.pdb_id 1MC9 _pdbx_database_PDB_obs_spr.replace_pdb_id 1KNN _pdbx_database_PDB_obs_spr.date 2002-09-11 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KNL 'STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13' unspecified PDB 1KNM 'STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH LACTOSE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MC9 _pdbx_database_status.recvd_initial_deposition_date 2002-08-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Notenboom, V.' 1 'Boraston, A.B.' 2 'Williams, S.J.' 3 'Kilburn, D.G.' 4 'Rose, D.R.' 5 # _citation.id primary _citation.title ;High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 41 _citation.page_first 4246 _citation.page_last 4254 _citation.year 2002 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11914070 _citation.pdbx_database_id_DOI 10.1021/bi015865j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Notenboom, V.' 1 ? primary 'Boraston, A.B.' 2 ? primary 'Williams, S.J.' 3 ? primary 'Kilburn, D.G.' 4 ? primary 'Rose, D.R.' 5 ? # _cell.entry_id 1MC9 _cell.length_a 55.130 _cell.length_b 55.130 _cell.length_c 80.142 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MC9 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ENDO-1,4-BETA-XYLANASE A' 13608.731 1 3.2.1.8 ? 'CARBOHYDRATE BINDING MODULE (RESIDUES 348-477)' ? 2 branched man 'beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose' 678.589 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 187 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'XYLANASE A, 1,4-BETA-D-XYLAN XYLANOHYDROLASE A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EPPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIYSCWGGD NQKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWTRT ; _entity_poly.pdbx_seq_one_letter_code_can ;EPPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIYSCWGGD NQKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWTRT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PRO n 1 3 PRO n 1 4 ALA n 1 5 ASP n 1 6 GLY n 1 7 GLY n 1 8 GLN n 1 9 ILE n 1 10 LYS n 1 11 GLY n 1 12 VAL n 1 13 GLY n 1 14 SER n 1 15 GLY n 1 16 ARG n 1 17 CYS n 1 18 LEU n 1 19 ASP n 1 20 VAL n 1 21 PRO n 1 22 ASP n 1 23 ALA n 1 24 SER n 1 25 THR n 1 26 SER n 1 27 ASP n 1 28 GLY n 1 29 THR n 1 30 GLN n 1 31 LEU n 1 32 GLN n 1 33 LEU n 1 34 TRP n 1 35 ASP n 1 36 CYS n 1 37 HIS n 1 38 SER n 1 39 GLY n 1 40 THR n 1 41 ASN n 1 42 GLN n 1 43 GLN n 1 44 TRP n 1 45 ALA n 1 46 ALA n 1 47 THR n 1 48 ASP n 1 49 ALA n 1 50 GLY n 1 51 GLU n 1 52 LEU n 1 53 ARG n 1 54 VAL n 1 55 TYR n 1 56 GLY n 1 57 ASP n 1 58 LYS n 1 59 CYS n 1 60 LEU n 1 61 ASP n 1 62 ALA n 1 63 ALA n 1 64 GLY n 1 65 THR n 1 66 SER n 1 67 ASN n 1 68 GLY n 1 69 SER n 1 70 LYS n 1 71 VAL n 1 72 GLN n 1 73 ILE n 1 74 TYR n 1 75 SER n 1 76 CYS n 1 77 TRP n 1 78 GLY n 1 79 GLY n 1 80 ASP n 1 81 ASN n 1 82 GLN n 1 83 LYS n 1 84 TRP n 1 85 ARG n 1 86 LEU n 1 87 ASN n 1 88 SER n 1 89 ASP n 1 90 GLY n 1 91 SER n 1 92 VAL n 1 93 VAL n 1 94 GLY n 1 95 VAL n 1 96 GLN n 1 97 SER n 1 98 GLY n 1 99 LEU n 1 100 CYS n 1 101 LEU n 1 102 ASP n 1 103 ALA n 1 104 VAL n 1 105 GLY n 1 106 ASN n 1 107 GLY n 1 108 THR n 1 109 ALA n 1 110 ASN n 1 111 GLY n 1 112 THR n 1 113 LEU n 1 114 ILE n 1 115 GLN n 1 116 LEU n 1 117 TYR n 1 118 THR n 1 119 CYS n 1 120 SER n 1 121 ASN n 1 122 GLY n 1 123 SER n 1 124 ASN n 1 125 GLN n 1 126 ARG n 1 127 TRP n 1 128 THR n 1 129 ARG n 1 130 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptomyces _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces lividans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1916 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code XYNA_STRLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EPPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIYSCWGGD NQKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWTRT ; _struct_ref.pdbx_align_begin 348 _struct_ref.pdbx_db_accession P26514 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MC9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P26514 _struct_ref_seq.db_align_beg 348 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 477 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose ? 'C5 H10 O5' 150.130 # _exptl.entry_id 1MC9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.38 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details '1.8 mM ammonium sulfate, 50 mM MES (pH 6.5), and 5% dioxane, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-03-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1MC9 _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 18.050 _reflns.d_resolution_high 1.700 _reflns.number_obs 13471 _reflns.number_all ? _reflns.percent_possible_obs 83.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 23.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1MC9 _refine.ls_number_reflns_obs 13471 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 18.05 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_all 0.176 _refine.ls_R_factor_R_work 0.164 _refine.ls_R_factor_R_free 0.22 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 664 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 924 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 187 _refine_hist.number_atoms_total 1168 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 18.05 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d 1.440 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1MC9 _struct.title 'STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH XYLOPENTAOSE' _struct.pdbx_descriptor 'ENDO-1,4-BETA-XYLANASE A (E.C.3.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MC9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'XYLANASE A XYLAN BINDING DOMAIN CBM13, LECTIN-LIKE BETA-TREFOIL FOLD, XYLOPENTAOSE COMPLEX, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 20 ? SER A 24 ? VAL A 19 SER A 23 5 ? 5 HELX_P HELX_P2 2 GLY A 39 ? GLN A 43 ? GLY A 38 GLN A 42 5 ? 5 HELX_P HELX_P3 3 GLY A 79 ? GLN A 82 ? GLY A 78 GLN A 81 5 ? 4 HELX_P HELX_P4 4 GLY A 105 ? GLY A 107 ? GLY A 104 GLY A 106 5 ? 3 HELX_P HELX_P5 5 GLY A 122 ? GLN A 125 ? GLY A 121 GLN A 124 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 16 A CYS 35 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf2 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 76 SG ? ? A CYS 58 A CYS 75 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? A CYS 100 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 99 A CYS 118 1_555 ? ? ? ? ? ? ? 2.601 ? ? covale1 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 1 B XYP 2 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale2 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 2 B XYP 3 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale3 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 3 B XYP 4 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale4 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 4 B XYP 5 1_555 ? ? ? ? ? ? ? 1.383 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 4 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 10 ? GLY A 11 ? LYS A 9 GLY A 10 A 2 TRP A 127 ? THR A 128 ? TRP A 126 THR A 127 B 1 CYS A 17 ? ASP A 19 ? CYS A 16 ASP A 18 B 2 GLN A 32 ? TRP A 34 ? GLN A 31 TRP A 33 C 1 ALA A 45 ? ALA A 46 ? ALA A 44 ALA A 45 C 2 LEU A 52 ? VAL A 54 ? LEU A 51 VAL A 53 C 3 LYS A 58 ? ALA A 62 ? LYS A 57 ALA A 61 C 4 VAL A 71 ? SER A 75 ? VAL A 70 SER A 74 D 1 TRP A 84 ? LEU A 86 ? TRP A 83 LEU A 85 D 2 VAL A 92 ? GLY A 94 ? VAL A 91 GLY A 93 E 1 CYS A 100 ? ALA A 103 ? CYS A 99 ALA A 102 E 2 ILE A 114 ? TYR A 117 ? ILE A 113 TYR A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 10 ? N LYS A 9 O THR A 128 ? O THR A 127 B 1 2 N ASP A 19 ? N ASP A 18 O GLN A 32 ? O GLN A 31 C 1 2 N ALA A 45 ? N ALA A 44 O ARG A 53 ? O ARG A 52 C 2 3 N VAL A 54 ? N VAL A 53 O LYS A 58 ? O LYS A 57 C 3 4 N CYS A 59 ? N CYS A 58 O TYR A 74 ? O TYR A 73 D 1 2 N ARG A 85 ? N ARG A 84 O VAL A 93 ? O VAL A 92 E 1 2 N CYS A 100 ? N CYS A 99 O TYR A 117 ? O TYR A 116 # _database_PDB_matrix.entry_id 1MC9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MC9 _atom_sites.fract_transf_matrix[1][1] 0.018139 _atom_sites.fract_transf_matrix[1][2] 0.010473 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 0 ? ? ? A . n A 1 2 PRO 2 1 ? ? ? A . n A 1 3 PRO 3 2 ? ? ? A . n A 1 4 ALA 4 3 ? ? ? A . n A 1 5 ASP 5 4 4 ASP ASP A . n A 1 6 GLY 6 5 5 GLY GLY A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 GLN 8 7 7 GLN GLN A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 GLY 15 14 14 GLY GLY A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 CYS 17 16 16 CYS CYS A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 GLN 32 31 31 GLN GLN A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 TRP 34 33 33 TRP TRP A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 CYS 36 35 35 CYS CYS A . n A 1 37 HIS 37 36 36 HIS HIS A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 GLN 42 41 41 GLN GLN A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 TRP 44 43 43 TRP TRP A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 TYR 55 54 54 TYR TYR A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 CYS 59 58 58 CYS CYS A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 GLY 64 63 63 GLY GLY A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ASN 67 66 66 ASN ASN A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 TYR 74 73 73 TYR TYR A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 CYS 76 75 75 CYS CYS A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 GLY 79 78 78 GLY GLY A . n A 1 80 ASP 80 79 79 ASP ASP A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 TRP 84 83 83 TRP TRP A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 CYS 100 99 99 CYS CYS A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 CYS 119 118 118 CYS CYS A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ASN 124 123 123 ASN ASN A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 ARG 126 125 125 ARG ARG A . n A 1 127 TRP 127 126 126 TRP TRP A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 ARG 129 128 128 ARG ARG A . n A 1 130 THR 130 129 129 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 130 130 SO4 SO4 A . D 4 GOL 1 136 136 GOL GOL A . E 5 HOH 1 137 137 HOH HOH A . E 5 HOH 2 138 138 HOH HOH A . E 5 HOH 3 139 139 HOH HOH A . E 5 HOH 4 140 140 HOH HOH A . E 5 HOH 5 141 141 HOH HOH A . E 5 HOH 6 142 142 HOH HOH A . E 5 HOH 7 143 143 HOH HOH A . E 5 HOH 8 144 144 HOH HOH A . E 5 HOH 9 145 145 HOH HOH A . E 5 HOH 10 146 146 HOH HOH A . E 5 HOH 11 147 147 HOH HOH A . E 5 HOH 12 148 148 HOH HOH A . E 5 HOH 13 149 149 HOH HOH A . E 5 HOH 14 150 150 HOH HOH A . E 5 HOH 15 151 151 HOH HOH A . E 5 HOH 16 152 152 HOH HOH A . E 5 HOH 17 153 153 HOH HOH A . E 5 HOH 18 154 154 HOH HOH A . E 5 HOH 19 155 155 HOH HOH A . E 5 HOH 20 156 156 HOH HOH A . E 5 HOH 21 157 157 HOH HOH A . E 5 HOH 22 158 158 HOH HOH A . E 5 HOH 23 159 159 HOH HOH A . E 5 HOH 24 160 160 HOH HOH A . E 5 HOH 25 161 161 HOH HOH A . E 5 HOH 26 162 162 HOH HOH A . E 5 HOH 27 163 163 HOH HOH A . E 5 HOH 28 164 164 HOH HOH A . E 5 HOH 29 165 165 HOH HOH A . E 5 HOH 30 166 166 HOH HOH A . E 5 HOH 31 167 167 HOH HOH A . E 5 HOH 32 168 168 HOH HOH A . E 5 HOH 33 169 169 HOH HOH A . E 5 HOH 34 170 170 HOH HOH A . E 5 HOH 35 171 171 HOH HOH A . E 5 HOH 36 172 172 HOH HOH A . E 5 HOH 37 173 173 HOH HOH A . E 5 HOH 38 174 174 HOH HOH A . E 5 HOH 39 175 175 HOH HOH A . E 5 HOH 40 176 176 HOH HOH A . E 5 HOH 41 177 177 HOH HOH A . E 5 HOH 42 178 178 HOH HOH A . E 5 HOH 43 179 179 HOH HOH A . E 5 HOH 44 180 180 HOH HOH A . E 5 HOH 45 181 181 HOH HOH A . E 5 HOH 46 182 182 HOH HOH A . E 5 HOH 47 183 183 HOH HOH A . E 5 HOH 48 184 184 HOH HOH A . E 5 HOH 49 185 185 HOH HOH A . E 5 HOH 50 186 186 HOH HOH A . E 5 HOH 51 187 187 HOH HOH A . E 5 HOH 52 188 188 HOH HOH A . E 5 HOH 53 189 189 HOH HOH A . E 5 HOH 54 190 190 HOH HOH A . E 5 HOH 55 191 191 HOH HOH A . E 5 HOH 56 192 192 HOH HOH A . E 5 HOH 57 193 193 HOH HOH A . E 5 HOH 58 194 194 HOH HOH A . E 5 HOH 59 195 195 HOH HOH A . E 5 HOH 60 196 196 HOH HOH A . E 5 HOH 61 197 197 HOH HOH A . E 5 HOH 62 198 198 HOH HOH A . E 5 HOH 63 199 199 HOH HOH A . E 5 HOH 64 200 200 HOH HOH A . E 5 HOH 65 201 201 HOH HOH A . E 5 HOH 66 202 202 HOH HOH A . E 5 HOH 67 203 203 HOH HOH A . E 5 HOH 68 204 204 HOH HOH A . E 5 HOH 69 205 205 HOH HOH A . E 5 HOH 70 206 206 HOH HOH A . E 5 HOH 71 207 207 HOH HOH A . E 5 HOH 72 208 208 HOH HOH A . E 5 HOH 73 209 209 HOH HOH A . E 5 HOH 74 210 210 HOH HOH A . E 5 HOH 75 211 211 HOH HOH A . E 5 HOH 76 212 212 HOH HOH A . E 5 HOH 77 213 213 HOH HOH A . E 5 HOH 78 214 214 HOH HOH A . E 5 HOH 79 215 215 HOH HOH A . E 5 HOH 80 216 216 HOH HOH A . E 5 HOH 81 217 217 HOH HOH A . E 5 HOH 82 218 218 HOH HOH A . E 5 HOH 83 219 219 HOH HOH A . E 5 HOH 84 220 220 HOH HOH A . E 5 HOH 85 221 221 HOH HOH A . E 5 HOH 86 222 222 HOH HOH A . E 5 HOH 87 223 223 HOH HOH A . E 5 HOH 88 224 224 HOH HOH A . E 5 HOH 89 225 225 HOH HOH A . E 5 HOH 90 226 226 HOH HOH A . E 5 HOH 91 227 227 HOH HOH A . E 5 HOH 92 228 228 HOH HOH A . E 5 HOH 93 229 229 HOH HOH A . E 5 HOH 94 230 230 HOH HOH A . E 5 HOH 95 231 231 HOH HOH A . E 5 HOH 96 232 232 HOH HOH A . E 5 HOH 97 233 233 HOH HOH A . E 5 HOH 98 234 234 HOH HOH A . E 5 HOH 99 235 235 HOH HOH A . E 5 HOH 100 236 236 HOH HOH A . E 5 HOH 101 237 237 HOH HOH A . E 5 HOH 102 238 238 HOH HOH A . E 5 HOH 103 239 239 HOH HOH A . E 5 HOH 104 240 240 HOH HOH A . E 5 HOH 105 241 241 HOH HOH A . E 5 HOH 106 242 242 HOH HOH A . E 5 HOH 107 243 243 HOH HOH A . E 5 HOH 108 244 244 HOH HOH A . E 5 HOH 109 245 245 HOH HOH A . E 5 HOH 110 246 246 HOH HOH A . E 5 HOH 111 247 247 HOH HOH A . E 5 HOH 112 248 248 HOH HOH A . E 5 HOH 113 249 249 HOH HOH A . E 5 HOH 114 250 250 HOH HOH A . E 5 HOH 115 251 251 HOH HOH A . E 5 HOH 116 252 252 HOH HOH A . E 5 HOH 117 253 253 HOH HOH A . E 5 HOH 118 254 254 HOH HOH A . E 5 HOH 119 255 255 HOH HOH A . E 5 HOH 120 256 256 HOH HOH A . E 5 HOH 121 257 257 HOH HOH A . E 5 HOH 122 258 258 HOH HOH A . E 5 HOH 123 259 259 HOH HOH A . E 5 HOH 124 260 260 HOH HOH A . E 5 HOH 125 261 261 HOH HOH A . E 5 HOH 126 262 262 HOH HOH A . E 5 HOH 127 263 263 HOH HOH A . E 5 HOH 128 264 264 HOH HOH A . E 5 HOH 129 265 265 HOH HOH A . E 5 HOH 130 266 266 HOH HOH A . E 5 HOH 131 267 267 HOH HOH A . E 5 HOH 132 268 268 HOH HOH A . E 5 HOH 133 269 269 HOH HOH A . E 5 HOH 134 270 270 HOH HOH A . E 5 HOH 135 271 271 HOH HOH A . E 5 HOH 136 272 272 HOH HOH A . E 5 HOH 137 273 273 HOH HOH A . E 5 HOH 138 274 274 HOH HOH A . E 5 HOH 139 275 275 HOH HOH A . E 5 HOH 140 276 276 HOH HOH A . E 5 HOH 141 277 277 HOH HOH A . E 5 HOH 142 278 278 HOH HOH A . E 5 HOH 143 279 279 HOH HOH A . E 5 HOH 144 280 280 HOH HOH A . E 5 HOH 145 281 281 HOH HOH A . E 5 HOH 146 282 282 HOH HOH A . E 5 HOH 147 283 283 HOH HOH A . E 5 HOH 148 284 284 HOH HOH A . E 5 HOH 149 285 285 HOH HOH A . E 5 HOH 150 286 286 HOH HOH A . E 5 HOH 151 287 287 HOH HOH A . E 5 HOH 152 288 288 HOH HOH A . E 5 HOH 153 289 289 HOH HOH A . E 5 HOH 154 290 290 HOH HOH A . E 5 HOH 155 291 291 HOH HOH A . E 5 HOH 156 292 292 HOH HOH A . E 5 HOH 157 293 293 HOH HOH A . E 5 HOH 158 294 294 HOH HOH A . E 5 HOH 159 295 295 HOH HOH A . E 5 HOH 160 296 296 HOH HOH A . E 5 HOH 161 297 297 HOH HOH A . E 5 HOH 162 298 298 HOH HOH A . E 5 HOH 163 299 299 HOH HOH A . E 5 HOH 164 300 300 HOH HOH A . E 5 HOH 165 301 301 HOH HOH A . E 5 HOH 166 302 302 HOH HOH A . E 5 HOH 167 303 303 HOH HOH A . E 5 HOH 168 304 304 HOH HOH A . E 5 HOH 169 305 305 HOH HOH A . E 5 HOH 170 306 306 HOH HOH A . E 5 HOH 171 307 307 HOH HOH A . E 5 HOH 172 308 308 HOH HOH A . E 5 HOH 173 309 309 HOH HOH A . E 5 HOH 174 310 310 HOH HOH A . E 5 HOH 175 311 311 HOH HOH A . E 5 HOH 176 312 312 HOH HOH A . E 5 HOH 177 313 313 HOH HOH A . E 5 HOH 178 314 314 HOH HOH A . E 5 HOH 179 315 315 HOH HOH A . E 5 HOH 180 316 316 HOH HOH A . E 5 HOH 181 317 317 HOH HOH A . E 5 HOH 182 318 318 HOH HOH A . E 5 HOH 183 319 319 HOH HOH A . E 5 HOH 184 320 320 HOH HOH A . E 5 HOH 185 321 321 HOH HOH A . E 5 HOH 186 322 322 HOH HOH A . E 5 HOH 187 323 323 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 296 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-09-11 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_special_symmetry 14 4 'Structure model' pdbx_validate_close_contact 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_atom_id' 3 4 'Structure model' '_atom_site.auth_seq_id' 4 4 'Structure model' '_atom_site.label_asym_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_chem_comp.name' 7 4 'Structure model' '_chem_comp.type' 8 4 'Structure model' '_entity.formula_weight' 9 4 'Structure model' '_entity.pdbx_description' 10 4 'Structure model' '_entity.pdbx_number_of_molecules' 11 4 'Structure model' '_entity.type' 12 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 13 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 14 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 15 4 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_1' 16 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 REFMAC refinement . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 B XYP 5 ? ? O A HOH 285 ? ? 1.96 2 1 O A HOH 155 ? ? O A HOH 315 ? ? 2.04 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LEU 85 ? ? CD1 A LEU 85 ? ? 2.635 1.514 1.121 0.037 N 2 1 CG A LEU 85 ? ? CD2 A LEU 85 ? ? 2.115 1.514 0.601 0.037 N 3 1 CA A LEU 85 ? ? C A LEU 85 ? ? 1.974 1.525 0.449 0.026 N 4 1 CG A ASN 86 ? ? OD1 A ASN 86 ? ? 2.543 1.235 1.308 0.022 N 5 1 CA A ASN 86 ? ? C A ASN 86 ? ? 1.898 1.525 0.373 0.026 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 30 ? ? CB A LEU 30 ? ? CG A LEU 30 ? ? 101.15 115.30 -14.15 2.30 N 2 1 CB A LEU 85 ? ? CG A LEU 85 ? ? CD1 A LEU 85 ? ? 87.87 111.00 -23.13 1.70 N 3 1 N A LEU 85 ? ? CA A LEU 85 ? ? C A LEU 85 ? ? 92.57 111.00 -18.43 2.70 N 4 1 CB A ASN 86 ? ? CA A ASN 86 ? ? C A ASN 86 ? ? 98.33 110.40 -12.07 2.00 N 5 1 OD1 A ASN 86 ? ? CG A ASN 86 ? ? ND2 A ASN 86 ? ? 102.87 121.90 -19.03 2.30 N 6 1 CB A ASN 86 ? ? CG A ASN 86 ? ? OD1 A ASN 86 ? ? 81.42 121.60 -40.18 2.00 N 7 1 N A ASN 86 ? ? CA A ASN 86 ? ? C A ASN 86 ? ? 92.73 111.00 -18.27 2.70 N 8 1 CA A ASN 86 ? ? C A ASN 86 ? ? N A SER 87 ? ? 103.45 117.20 -13.75 2.20 Y 9 1 CB A ASP 88 ? ? CG A ASP 88 ? ? OD2 A ASP 88 ? ? 124.53 118.30 6.23 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 76 ? ? -142.65 -4.50 2 1 ARG A 128 ? ? 92.02 -173.71 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LEU A 85 ? ? -20.10 2 1 ASN A 86 ? ? -19.80 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ASN _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 86 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.286 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 0 ? A GLU 1 2 1 Y 1 A PRO 1 ? A PRO 2 3 1 Y 1 A PRO 2 ? A PRO 3 4 1 Y 1 A ALA 3 ? A ALA 4 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 XYP 1 B XYP 1 ? XYS 131 n B 2 XYP 2 B XYP 2 ? XYS 132 n B 2 XYP 3 B XYP 3 ? XYS 133 n B 2 XYP 4 B XYP 4 ? XYS 134 n B 2 XYP 5 B XYP 5 ? XYS 135 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,5,4/[a212h-1b_1-5]/1-1-1-1-1/a4-b1_b4-c1_c4-d1_d4-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 XYP C1 O1 1 XYP O4 HO4 sing ? 2 2 3 XYP C1 O1 2 XYP O4 HO4 sing ? 3 2 4 XYP C1 O1 3 XYP O4 HO4 sing ? 4 2 5 XYP C1 O1 4 XYP O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 XYP 1 n 2 XYP 2 n 2 XYP 3 n 2 XYP 4 n 2 XYP 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 water HOH #