data_1MDY # _entry.id 1MDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MDY pdb_00001mdy 10.2210/pdb1mdy/pdb RCSB PDT016 ? ? WWPDB D_1000174968 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-08-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MDY _pdbx_database_status.recvd_initial_deposition_date 1994-06-09 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ma, P.C.M.' 1 'Rould, M.A.' 2 'Weintraub, H.' 3 'Pabo, C.O.' 4 # _citation.id primary _citation.title 'Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 77 _citation.page_first 451 _citation.page_last 459 _citation.year 1994 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8181063 _citation.pdbx_database_id_DOI '10.1016/0092-8674(94)90159-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ma, P.C.' 1 ? primary 'Rould, M.A.' 2 ? primary 'Weintraub, H.' 3 ? primary 'Pabo, C.O.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') ; 4279.804 4 ? ? ? ? 2 polymer nat 'PROTEIN (MYOD BHLH DOMAIN)' 8058.361 1 ? ? ? ? 3 polymer nat 'PROTEIN (MYOD BHLH DOMAIN)' 7269.341 3 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DA)(DC)(DA)(DG)(DC)(DT)(DG)(DT)(DT)(DG)(DA)' TCAACAGCTGTTGA E,F,G,H ? 2 'polypeptide(L)' no no MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD A ? 3 'polypeptide(L)' no no TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD B,C,D ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DA n 1 4 DA n 1 5 DC n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DG n 1 14 DA n 2 1 MET n 2 2 GLU n 2 3 LEU n 2 4 LYS n 2 5 ARG n 2 6 LYS n 2 7 THR n 2 8 THR n 2 9 ASN n 2 10 ALA n 2 11 ASP n 2 12 ARG n 2 13 ARG n 2 14 LYS n 2 15 ALA n 2 16 ALA n 2 17 THR n 2 18 MET n 2 19 ARG n 2 20 GLU n 2 21 ARG n 2 22 ARG n 2 23 ARG n 2 24 LEU n 2 25 SER n 2 26 LYS n 2 27 VAL n 2 28 ASN n 2 29 GLU n 2 30 ALA n 2 31 PHE n 2 32 GLU n 2 33 THR n 2 34 LEU n 2 35 LYS n 2 36 ARG n 2 37 SER n 2 38 THR n 2 39 SER n 2 40 SER n 2 41 ASN n 2 42 PRO n 2 43 ASN n 2 44 GLN n 2 45 ARG n 2 46 LEU n 2 47 PRO n 2 48 LYS n 2 49 VAL n 2 50 GLU n 2 51 ILE n 2 52 LEU n 2 53 ARG n 2 54 ASN n 2 55 ALA n 2 56 ILE n 2 57 ARG n 2 58 TYR n 2 59 ILE n 2 60 GLU n 2 61 GLY n 2 62 LEU n 2 63 GLN n 2 64 ALA n 2 65 LEU n 2 66 LEU n 2 67 ARG n 2 68 ASP n 3 1 THR n 3 2 THR n 3 3 ASN n 3 4 ALA n 3 5 ASP n 3 6 ARG n 3 7 ARG n 3 8 LYS n 3 9 ALA n 3 10 ALA n 3 11 THR n 3 12 MET n 3 13 ARG n 3 14 GLU n 3 15 ARG n 3 16 ARG n 3 17 ARG n 3 18 LEU n 3 19 SER n 3 20 LYS n 3 21 VAL n 3 22 ASN n 3 23 GLU n 3 24 ALA n 3 25 PHE n 3 26 GLU n 3 27 THR n 3 28 LEU n 3 29 LYS n 3 30 ARG n 3 31 SER n 3 32 THR n 3 33 SER n 3 34 SER n 3 35 ASN n 3 36 PRO n 3 37 ASN n 3 38 GLN n 3 39 ARG n 3 40 LEU n 3 41 PRO n 3 42 LYS n 3 43 VAL n 3 44 GLU n 3 45 ILE n 3 46 LEU n 3 47 ARG n 3 48 ASN n 3 49 ALA n 3 50 ILE n 3 51 ARG n 3 52 TYR n 3 53 ILE n 3 54 GLU n 3 55 GLY n 3 56 LEU n 3 57 GLN n 3 58 ALA n 3 59 LEU n 3 60 LEU n 3 61 ARG n 3 62 ASP n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 2 1 sample ? ? 'house mouse' 'Mus musculus' 10090 Mus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? 'house mouse' 'Mus musculus' 10090 Mus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T E . n A 1 2 DC 2 2 2 DC C E . n A 1 3 DA 3 3 3 DA A E . n A 1 4 DA 4 4 4 DA A E . n A 1 5 DC 5 5 5 DC C E . n A 1 6 DA 6 6 6 DA A E . n A 1 7 DG 7 7 7 DG G E . n A 1 8 DC 8 8 8 DC C E . n A 1 9 DT 9 9 9 DT T E . n A 1 10 DG 10 10 10 DG G E . n A 1 11 DT 11 11 11 DT T E . n A 1 12 DT 12 12 12 DT T E . n A 1 13 DG 13 13 13 DG G E . n A 1 14 DA 14 14 14 DA A E . n B 1 1 DT 1 15 15 DT T F . n B 1 2 DC 2 16 16 DC C F . n B 1 3 DA 3 17 17 DA A F . n B 1 4 DA 4 18 18 DA A F . n B 1 5 DC 5 19 19 DC C F . n B 1 6 DA 6 20 20 DA A F . n B 1 7 DG 7 21 21 DG G F . n B 1 8 DC 8 22 22 DC C F . n B 1 9 DT 9 23 23 DT T F . n B 1 10 DG 10 24 24 DG G F . n B 1 11 DT 11 25 25 DT T F . n B 1 12 DT 12 26 26 DT T F . n B 1 13 DG 13 27 27 DG G F . n B 1 14 DA 14 28 28 DA A F . n C 1 1 DT 1 29 29 DT T G . n C 1 2 DC 2 30 30 DC C G . n C 1 3 DA 3 31 31 DA A G . n C 1 4 DA 4 32 32 DA A G . n C 1 5 DC 5 33 33 DC C G . n C 1 6 DA 6 34 34 DA A G . n C 1 7 DG 7 35 35 DG G G . n C 1 8 DC 8 36 36 DC C G . n C 1 9 DT 9 37 37 DT T G . n C 1 10 DG 10 38 38 DG G G . n C 1 11 DT 11 39 39 DT T G . n C 1 12 DT 12 40 40 DT T G . n C 1 13 DG 13 41 41 DG G G . n C 1 14 DA 14 42 42 DA A G . n D 1 1 DT 1 43 43 DT T H . n D 1 2 DC 2 44 44 DC C H . n D 1 3 DA 3 45 45 DA A H . n D 1 4 DA 4 46 46 DA A H . n D 1 5 DC 5 47 47 DC C H . n D 1 6 DA 6 48 48 DA A H . n D 1 7 DG 7 49 49 DG G H . n D 1 8 DC 8 50 50 DC C H . n D 1 9 DT 9 51 51 DT T H . n D 1 10 DG 10 52 52 DG G H . n D 1 11 DT 11 53 53 DT T H . n D 1 12 DT 12 54 54 DT T H . n D 1 13 DG 13 55 55 DG G H . n D 1 14 DA 14 56 56 DA A H . n E 2 1 MET 1 1 57 MET MET A . n E 2 2 GLU 2 2 58 GLU GLU A . n E 2 3 LEU 3 3 59 LEU LEU A . n E 2 4 LYS 4 102 60 LYS LYS A . n E 2 5 ARG 5 103 61 ARG ARG A . n E 2 6 LYS 6 104 62 LYS LYS A . n E 2 7 THR 7 105 63 THR THR A . n E 2 8 THR 8 106 64 THR THR A . n E 2 9 ASN 9 107 65 ASN ASN A . n E 2 10 ALA 10 108 66 ALA ALA A . n E 2 11 ASP 11 109 67 ASP ASP A . n E 2 12 ARG 12 110 68 ARG ARG A . n E 2 13 ARG 13 111 69 ARG ARG A . n E 2 14 LYS 14 112 70 LYS LYS A . n E 2 15 ALA 15 113 71 ALA ALA A . n E 2 16 ALA 16 114 72 ALA ALA A . n E 2 17 THR 17 115 73 THR THR A . n E 2 18 MET 18 116 74 MET MET A . n E 2 19 ARG 19 117 75 ARG ARG A . n E 2 20 GLU 20 118 76 GLU GLU A . n E 2 21 ARG 21 119 77 ARG ARG A . n E 2 22 ARG 22 120 78 ARG ARG A . n E 2 23 ARG 23 121 79 ARG ARG A . n E 2 24 LEU 24 122 80 LEU LEU A . n E 2 25 SER 25 123 81 SER SER A . n E 2 26 LYS 26 124 82 LYS LYS A . n E 2 27 VAL 27 125 83 VAL VAL A . n E 2 28 ASN 28 126 84 ASN ASN A . n E 2 29 GLU 29 127 85 GLU GLU A . n E 2 30 ALA 30 128 86 ALA ALA A . n E 2 31 PHE 31 129 87 PHE PHE A . n E 2 32 GLU 32 130 88 GLU GLU A . n E 2 33 THR 33 131 89 THR THR A . n E 2 34 LEU 34 132 90 LEU LEU A . n E 2 35 LYS 35 133 91 LYS LYS A . n E 2 36 ARG 36 134 92 ARG ARG A . n E 2 37 SER 37 135 93 SER SER A . n E 2 38 THR 38 136 94 THR THR A . n E 2 39 SER 39 137 95 SER SER A . n E 2 40 SER 40 138 96 SER SER A . n E 2 41 ASN 41 139 97 ASN ASN A . n E 2 42 PRO 42 140 98 PRO PRO A . n E 2 43 ASN 43 141 99 ASN ASN A . n E 2 44 GLN 44 142 100 GLN GLN A . n E 2 45 ARG 45 143 101 ARG ARG A . n E 2 46 LEU 46 144 102 LEU LEU A . n E 2 47 PRO 47 145 103 PRO PRO A . n E 2 48 LYS 48 146 104 LYS LYS A . n E 2 49 VAL 49 147 105 VAL VAL A . n E 2 50 GLU 50 148 106 GLU GLU A . n E 2 51 ILE 51 149 107 ILE ILE A . n E 2 52 LEU 52 150 108 LEU LEU A . n E 2 53 ARG 53 151 109 ARG ARG A . n E 2 54 ASN 54 152 110 ASN ASN A . n E 2 55 ALA 55 153 111 ALA ALA A . n E 2 56 ILE 56 154 112 ILE ILE A . n E 2 57 ARG 57 155 113 ARG ARG A . n E 2 58 TYR 58 156 114 TYR TYR A . n E 2 59 ILE 59 157 115 ILE ILE A . n E 2 60 GLU 60 158 116 GLU GLU A . n E 2 61 GLY 61 159 117 GLY GLY A . n E 2 62 LEU 62 160 118 LEU LEU A . n E 2 63 GLN 63 161 119 GLN GLN A . n E 2 64 ALA 64 162 120 ALA ALA A . n E 2 65 LEU 65 163 121 LEU LEU A . n E 2 66 LEU 66 164 122 LEU LEU A . n E 2 67 ARG 67 165 123 ARG ARG A . n E 2 68 ASP 68 166 124 ASP ASP A . n F 3 1 THR 1 105 125 THR THR B . n F 3 2 THR 2 106 126 THR THR B . n F 3 3 ASN 3 107 127 ASN ASN B . n F 3 4 ALA 4 108 128 ALA ALA B . n F 3 5 ASP 5 109 129 ASP ASP B . n F 3 6 ARG 6 110 130 ARG ARG B . n F 3 7 ARG 7 111 131 ARG ARG B . n F 3 8 LYS 8 112 132 LYS LYS B . n F 3 9 ALA 9 113 133 ALA ALA B . n F 3 10 ALA 10 114 134 ALA ALA B . n F 3 11 THR 11 115 135 THR THR B . n F 3 12 MET 12 116 136 MET MET B . n F 3 13 ARG 13 117 137 ARG ARG B . n F 3 14 GLU 14 118 138 GLU GLU B . n F 3 15 ARG 15 119 139 ARG ARG B . n F 3 16 ARG 16 120 140 ARG ARG B . n F 3 17 ARG 17 121 141 ARG ARG B . n F 3 18 LEU 18 122 142 LEU LEU B . n F 3 19 SER 19 123 143 SER SER B . n F 3 20 LYS 20 124 144 LYS LYS B . n F 3 21 VAL 21 125 145 VAL VAL B . n F 3 22 ASN 22 126 146 ASN ASN B . n F 3 23 GLU 23 127 147 GLU GLU B . n F 3 24 ALA 24 128 148 ALA ALA B . n F 3 25 PHE 25 129 149 PHE PHE B . n F 3 26 GLU 26 130 150 GLU GLU B . n F 3 27 THR 27 131 151 THR THR B . n F 3 28 LEU 28 132 152 LEU LEU B . n F 3 29 LYS 29 133 153 LYS LYS B . n F 3 30 ARG 30 134 154 ARG ARG B . n F 3 31 SER 31 135 155 SER SER B . n F 3 32 THR 32 136 156 THR THR B . n F 3 33 SER 33 137 157 SER SER B . n F 3 34 SER 34 138 158 SER SER B . n F 3 35 ASN 35 139 159 ASN ASN B . n F 3 36 PRO 36 140 160 PRO PRO B . n F 3 37 ASN 37 141 161 ASN ASN B . n F 3 38 GLN 38 142 162 GLN GLN B . n F 3 39 ARG 39 143 163 ARG ARG B . n F 3 40 LEU 40 144 164 LEU LEU B . n F 3 41 PRO 41 145 165 PRO PRO B . n F 3 42 LYS 42 146 166 LYS LYS B . n F 3 43 VAL 43 147 167 VAL VAL B . n F 3 44 GLU 44 148 168 GLU GLU B . n F 3 45 ILE 45 149 169 ILE ILE B . n F 3 46 LEU 46 150 170 LEU LEU B . n F 3 47 ARG 47 151 171 ARG ARG B . n F 3 48 ASN 48 152 172 ASN ASN B . n F 3 49 ALA 49 153 173 ALA ALA B . n F 3 50 ILE 50 154 174 ILE ILE B . n F 3 51 ARG 51 155 175 ARG ARG B . n F 3 52 TYR 52 156 176 TYR TYR B . n F 3 53 ILE 53 157 177 ILE ILE B . n F 3 54 GLU 54 158 178 GLU GLU B . n F 3 55 GLY 55 159 179 GLY GLY B . n F 3 56 LEU 56 160 180 LEU LEU B . n F 3 57 GLN 57 161 181 GLN GLN B . n F 3 58 ALA 58 162 182 ALA ALA B . n F 3 59 LEU 59 163 183 LEU LEU B . n F 3 60 LEU 60 164 184 LEU LEU B . n F 3 61 ARG 61 165 185 ARG ARG B . n F 3 62 ASP 62 166 186 ASP ASP B . n G 3 1 THR 1 105 187 THR THR C . n G 3 2 THR 2 106 188 THR THR C . n G 3 3 ASN 3 107 189 ASN ASN C . n G 3 4 ALA 4 108 190 ALA ALA C . n G 3 5 ASP 5 109 191 ASP ASP C . n G 3 6 ARG 6 110 192 ARG ARG C . n G 3 7 ARG 7 111 193 ARG ARG C . n G 3 8 LYS 8 112 194 LYS LYS C . n G 3 9 ALA 9 113 195 ALA ALA C . n G 3 10 ALA 10 114 196 ALA ALA C . n G 3 11 THR 11 115 197 THR THR C . n G 3 12 MET 12 116 198 MET MET C . n G 3 13 ARG 13 117 199 ARG ARG C . n G 3 14 GLU 14 118 200 GLU GLU C . n G 3 15 ARG 15 119 201 ARG ARG C . n G 3 16 ARG 16 120 202 ARG ARG C . n G 3 17 ARG 17 121 203 ARG ARG C . n G 3 18 LEU 18 122 204 LEU LEU C . n G 3 19 SER 19 123 205 SER SER C . n G 3 20 LYS 20 124 206 LYS LYS C . n G 3 21 VAL 21 125 207 VAL VAL C . n G 3 22 ASN 22 126 208 ASN ASN C . n G 3 23 GLU 23 127 209 GLU GLU C . n G 3 24 ALA 24 128 210 ALA ALA C . n G 3 25 PHE 25 129 211 PHE PHE C . n G 3 26 GLU 26 130 212 GLU GLU C . n G 3 27 THR 27 131 213 THR THR C . n G 3 28 LEU 28 132 214 LEU LEU C . n G 3 29 LYS 29 133 215 LYS LYS C . n G 3 30 ARG 30 134 216 ARG ARG C . n G 3 31 SER 31 135 217 SER SER C . n G 3 32 THR 32 136 218 THR THR C . n G 3 33 SER 33 137 219 SER SER C . n G 3 34 SER 34 138 220 SER SER C . n G 3 35 ASN 35 139 221 ASN ASN C . n G 3 36 PRO 36 140 222 PRO PRO C . n G 3 37 ASN 37 141 223 ASN ASN C . n G 3 38 GLN 38 142 224 GLN GLN C . n G 3 39 ARG 39 143 225 ARG ARG C . n G 3 40 LEU 40 144 226 LEU LEU C . n G 3 41 PRO 41 145 227 PRO PRO C . n G 3 42 LYS 42 146 228 LYS LYS C . n G 3 43 VAL 43 147 229 VAL VAL C . n G 3 44 GLU 44 148 230 GLU GLU C . n G 3 45 ILE 45 149 231 ILE ILE C . n G 3 46 LEU 46 150 232 LEU LEU C . n G 3 47 ARG 47 151 233 ARG ARG C . n G 3 48 ASN 48 152 234 ASN ASN C . n G 3 49 ALA 49 153 235 ALA ALA C . n G 3 50 ILE 50 154 236 ILE ILE C . n G 3 51 ARG 51 155 237 ARG ARG C . n G 3 52 TYR 52 156 238 TYR TYR C . n G 3 53 ILE 53 157 239 ILE ILE C . n G 3 54 GLU 54 158 240 GLU GLU C . n G 3 55 GLY 55 159 241 GLY GLY C . n G 3 56 LEU 56 160 242 LEU LEU C . n G 3 57 GLN 57 161 243 GLN GLN C . n G 3 58 ALA 58 162 244 ALA ALA C . n G 3 59 LEU 59 163 245 LEU LEU C . n G 3 60 LEU 60 164 246 LEU LEU C . n G 3 61 ARG 61 165 247 ARG ARG C . n G 3 62 ASP 62 166 248 ASP ASP C . n H 3 1 THR 1 105 249 THR THR D . n H 3 2 THR 2 106 250 THR THR D . n H 3 3 ASN 3 107 251 ASN ASN D . n H 3 4 ALA 4 108 252 ALA ALA D . n H 3 5 ASP 5 109 253 ASP ASP D . n H 3 6 ARG 6 110 254 ARG ARG D . n H 3 7 ARG 7 111 255 ARG ARG D . n H 3 8 LYS 8 112 256 LYS LYS D . n H 3 9 ALA 9 113 257 ALA ALA D . n H 3 10 ALA 10 114 258 ALA ALA D . n H 3 11 THR 11 115 259 THR THR D . n H 3 12 MET 12 116 260 MET MET D . n H 3 13 ARG 13 117 261 ARG ARG D . n H 3 14 GLU 14 118 262 GLU GLU D . n H 3 15 ARG 15 119 263 ARG ARG D . n H 3 16 ARG 16 120 264 ARG ARG D . n H 3 17 ARG 17 121 265 ARG ARG D . n H 3 18 LEU 18 122 266 LEU LEU D . n H 3 19 SER 19 123 267 SER SER D . n H 3 20 LYS 20 124 268 LYS LYS D . n H 3 21 VAL 21 125 269 VAL VAL D . n H 3 22 ASN 22 126 270 ASN ASN D . n H 3 23 GLU 23 127 271 GLU GLU D . n H 3 24 ALA 24 128 272 ALA ALA D . n H 3 25 PHE 25 129 273 PHE PHE D . n H 3 26 GLU 26 130 274 GLU GLU D . n H 3 27 THR 27 131 275 THR THR D . n H 3 28 LEU 28 132 276 LEU LEU D . n H 3 29 LYS 29 133 277 LYS LYS D . n H 3 30 ARG 30 134 278 ARG ARG D . n H 3 31 SER 31 135 279 SER SER D . n H 3 32 THR 32 136 280 THR THR D . n H 3 33 SER 33 137 281 SER SER D . n H 3 34 SER 34 138 282 SER SER D . n H 3 35 ASN 35 139 283 ASN ASN D . n H 3 36 PRO 36 140 284 PRO PRO D . n H 3 37 ASN 37 141 285 ASN ASN D . n H 3 38 GLN 38 142 286 GLN GLN D . n H 3 39 ARG 39 143 287 ARG ARG D . n H 3 40 LEU 40 144 288 LEU LEU D . n H 3 41 PRO 41 145 289 PRO PRO D . n H 3 42 LYS 42 146 290 LYS LYS D . n H 3 43 VAL 43 147 291 VAL VAL D . n H 3 44 GLU 44 148 292 GLU GLU D . n H 3 45 ILE 45 149 293 ILE ILE D . n H 3 46 LEU 46 150 294 LEU LEU D . n H 3 47 ARG 47 151 295 ARG ARG D . n H 3 48 ASN 48 152 296 ASN ASN D . n H 3 49 ALA 49 153 297 ALA ALA D . n H 3 50 ILE 50 154 298 ILE ILE D . n H 3 51 ARG 51 155 299 ARG ARG D . n H 3 52 TYR 52 156 300 TYR TYR D . n H 3 53 ILE 53 157 301 ILE ILE D . n H 3 54 GLU 54 158 302 GLU GLU D . n H 3 55 GLY 55 159 303 GLY GLY D . n H 3 56 LEU 56 160 304 LEU LEU D . n H 3 57 GLN 57 161 305 GLN GLN D . n H 3 58 ALA 58 162 306 ALA ALA D . n H 3 59 LEU 59 163 307 LEU LEU D . n H 3 60 LEU 60 164 308 LEU LEU D . n H 3 61 ARG 61 165 309 ARG ARG D . n H 3 62 ASP 62 166 310 ASP ASP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 HOH 1 15 311 HOH HOH E . I 4 HOH 2 16 315 HOH HOH E . I 4 HOH 3 17 320 HOH HOH E . I 4 HOH 4 18 321 HOH HOH E . I 4 HOH 5 19 333 HOH HOH E . J 4 HOH 1 29 312 HOH HOH F . J 4 HOH 2 30 317 HOH HOH F . J 4 HOH 3 31 319 HOH HOH F . J 4 HOH 4 32 322 HOH HOH F . J 4 HOH 5 33 323 HOH HOH F . J 4 HOH 6 34 328 HOH HOH F . J 4 HOH 7 35 334 HOH HOH F . K 4 HOH 1 17 327 HOH HOH G . K 4 HOH 2 21 331 HOH HOH G . L 4 HOH 1 14 324 HOH HOH H . L 4 HOH 2 15 325 HOH HOH H . L 4 HOH 3 19 329 HOH HOH H . M 4 HOH 1 4 314 HOH HOH A . M 4 HOH 2 6 316 HOH HOH A . M 4 HOH 3 8 318 HOH HOH A . M 4 HOH 4 22 332 HOH HOH A . N 4 HOH 1 3 313 HOH HOH B . O 4 HOH 1 16 326 HOH HOH C . O 4 HOH 2 20 330 HOH HOH C . O 4 HOH 3 25 335 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 TNT refinement . ? 2 # _cell.entry_id 1MDY _cell.length_a 222.800 _cell.length_b 70.800 _cell.length_c 30.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MDY _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1MDY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.48 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1MDY _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2530000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2530000 _refine.ls_R_factor_R_free 0.3300000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2086 _refine_hist.pdbx_number_atoms_nucleic_acid 1136 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 3247 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.645814 0.720520 -0.252539 0.744460 0.667667 0.001127 0.169423 -0.187277 -0.967586 102.97015 -45.90718 11.36556 2 given ? -0.533164 0.834325 0.140135 0.807272 0.551272 -0.210739 -0.253077 0.000768 -0.967446 173.68367 -90.34569 34.22189 # _database_PDB_matrix.entry_id 1MDY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MDY _struct.title 'CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MDY _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MYOD_MOUSE 2 ? ? ? ? 2 PDB 1MDY 1 ? ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MDY A 4 ? 68 ? P10085 102 ? 166 ? 102 166 2 1 1MDY B 1 ? 62 ? P10085 105 ? 166 ? 105 166 3 1 1MDY C 1 ? 62 ? P10085 105 ? 166 ? 105 166 4 1 1MDY D 1 ? 62 ? P10085 105 ? 166 ? 105 166 5 2 1MDY E 1 ? 14 ? 1MDY 1 ? 14 ? 1 14 6 2 1MDY F 1 ? 14 ? 1MDY 15 ? 28 ? 15 28 7 2 1MDY G 1 ? 14 ? 1MDY 29 ? 42 ? 29 42 8 2 1MDY H 1 ? 14 ? 1MDY 43 ? 56 ? 43 56 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J,M,N 2 1 C,D,G,H,K,L,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;THE ASYMMETRIC UNIT CONTAINS FOUR MONOMERS OF MYOD TOGETHER WITH TWO DOUBLE-STRANDED 14 BASE PAIR OLIGONUCLEOTIDES. THERE ARE, THUS, TWO HOMODIMERS OF MYOD BOUND TO TWO DNA SITES IN THE ASYMMETRIC UNIT. THE DEPOSITORS HAVE INCLUDED RESIDUES 105 - 166 OF ALL FOUR OF THE MYOD MONOMERS IN THEIR MODEL. RESIDUES 1 - 3 AND 102 - 104 ARE ALSO INCLUDED IN ONE OUT OF THE FOUR MONOMERS, WHERE THESE RESIDUES ARE INVOLVED IN CRYSTAL PACKING CONTACTS. THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO CHAIN *A*. THE TRANSFORMATION PRESENTED ON *MTRIX 2* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *D* WHEN APPLIED TO CHAIN *C*. ; ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 ASN E 9 ? SER E 40 ? ASN A 107 SER A 138 1 'BASIC HEL. & HEL.1 FROM MON.1' 32 HELX_P HELX_P2 H2 LYS E 48 ? ASP E 68 ? LYS A 146 ASP A 166 1 'HELIX 2 FROM MONOMER 1' 21 HELX_P HELX_P3 H3 ASN F 3 ? SER F 34 ? ASN B 107 SER B 138 1 'BASIC HEL. & HEL.1 FROM MON.2' 32 HELX_P HELX_P4 H4 LYS F 42 ? ASP F 62 ? LYS B 146 ASP B 166 1 'HELIX 2 FROM MONOMER 2' 21 HELX_P HELX_P5 H5 ASN G 3 ? SER G 34 ? ASN C 107 SER C 138 1 'BASIC HEL. & HEL.1 FROM MON.3' 32 HELX_P HELX_P6 H6 LYS G 42 ? ASP G 62 ? LYS C 146 ASP C 166 1 'HELIX 2 FROM MONOMER 3' 21 HELX_P HELX_P7 H7 ASN H 3 ? SER H 34 ? ASN D 107 SER D 138 1 'BASIC HEL. & HEL.1 FROM MON.4' 32 HELX_P HELX_P8 H8 LYS H 42 ? ASP H 62 ? LYS D 146 ASP D 166 1 'HELIX 2 FROM MONOMER 4' 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 14 N1 ? ? E DT 1 F DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 14 N6 ? ? E DT 1 F DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 13 N1 ? ? E DC 2 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 13 O6 ? ? E DC 2 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 13 N2 ? ? E DC 2 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 12 N3 ? ? E DA 3 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 12 O4 ? ? E DA 3 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 11 N3 ? ? E DA 4 F DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 11 O4 ? ? E DA 4 F DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? E DC 5 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? E DC 5 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? E DC 5 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 9 N3 ? ? E DA 6 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 9 O4 ? ? E DA 6 F DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? E DG 7 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? E DG 7 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? E DG 7 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 7 N1 ? ? E DC 8 F DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 7 O6 ? ? E DC 8 F DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 7 N2 ? ? E DC 8 F DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 6 N1 ? ? E DT 9 F DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 6 N6 ? ? E DT 9 F DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 5 N3 ? ? E DG 10 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 5 O2 ? ? E DG 10 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 5 N4 ? ? E DG 10 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 4 N1 ? ? E DT 11 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 4 N6 ? ? E DT 11 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 3 N1 ? ? E DT 12 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 3 N6 ? ? E DT 12 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 2 N3 ? ? E DG 13 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 2 O2 ? ? E DG 13 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 2 N4 ? ? E DG 13 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 1 N3 ? ? E DA 14 F DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 1 O4 ? ? E DA 14 F DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 14 N1 ? ? G DT 29 H DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 14 N6 ? ? G DT 29 H DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 13 N1 ? ? G DC 30 H DG 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 13 O6 ? ? G DC 30 H DG 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 13 N2 ? ? G DC 30 H DG 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 12 N3 ? ? G DA 31 H DT 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 12 O4 ? ? G DA 31 H DT 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 11 N3 ? ? G DA 32 H DT 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 11 O4 ? ? G DA 32 H DT 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 10 N1 ? ? G DC 33 H DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 10 O6 ? ? G DC 33 H DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 10 N2 ? ? G DC 33 H DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 9 N3 ? ? G DA 34 H DT 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 9 O4 ? ? G DA 34 H DT 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 8 N3 ? ? G DG 35 H DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 8 O2 ? ? G DG 35 H DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 8 N4 ? ? G DG 35 H DC 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 7 N1 ? ? G DC 36 H DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 7 O6 ? ? G DC 36 H DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 7 N2 ? ? G DC 36 H DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 6 N1 ? ? G DT 37 H DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 6 N6 ? ? G DT 37 H DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 5 N3 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 5 O2 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 5 N4 ? ? G DG 38 H DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 4 N1 ? ? G DT 39 H DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 4 N6 ? ? G DT 39 H DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 3 N1 ? ? G DT 40 H DA 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 3 N6 ? ? G DT 40 H DA 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D DC 2 N3 ? ? G DG 41 H DC 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DG 13 N2 ? ? ? 1_555 D DC 2 O2 ? ? G DG 41 H DC 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DG 13 O6 ? ? ? 1_555 D DC 2 N4 ? ? G DG 41 H DC 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 1 N3 ? ? G DA 42 H DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 1 O4 ? ? G DA 42 H DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 E DC 5 ? ? O E HOH 19 ? ? 2.15 2 1 O4 F DT 25 ? ? O F HOH 30 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" E DC 2 ? ? "C3'" E DC 2 ? ? 1.366 1.419 -0.053 0.006 N 2 1 "O3'" F DC 16 ? ? "C3'" F DC 16 ? ? 1.381 1.419 -0.038 0.006 N 3 1 "O3'" H DC 44 ? ? "C3'" H DC 44 ? ? 1.381 1.419 -0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" E DT 1 ? ? "C1'" E DT 1 ? ? N1 E DT 1 ? ? 112.02 108.30 3.72 0.30 N 2 1 "O4'" E DC 2 ? ? "C1'" E DC 2 ? ? N1 E DC 2 ? ? 111.48 108.30 3.18 0.30 N 3 1 P E DC 5 ? ? "O5'" E DC 5 ? ? "C5'" E DC 5 ? ? 110.20 120.90 -10.70 1.60 N 4 1 "O4'" E DC 5 ? ? "C4'" E DC 5 ? ? "C3'" E DC 5 ? ? 100.79 104.50 -3.71 0.40 N 5 1 "O4'" E DA 6 ? ? "C1'" E DA 6 ? ? N9 E DA 6 ? ? 114.33 108.30 6.03 0.30 N 6 1 "C1'" E DC 8 ? ? "O4'" E DC 8 ? ? "C4'" E DC 8 ? ? 103.92 110.10 -6.18 1.00 N 7 1 "O4'" E DT 9 ? ? "C4'" E DT 9 ? ? "C3'" E DT 9 ? ? 100.56 104.50 -3.94 0.40 N 8 1 "O4'" E DT 9 ? ? "C1'" E DT 9 ? ? N1 E DT 9 ? ? 110.29 108.30 1.99 0.30 N 9 1 "O4'" E DT 11 ? ? "C1'" E DT 11 ? ? N1 E DT 11 ? ? 103.23 108.00 -4.77 0.70 N 10 1 "O4'" E DT 12 ? ? "C1'" E DT 12 ? ? N1 E DT 12 ? ? 112.27 108.30 3.97 0.30 N 11 1 "C3'" E DA 14 ? ? "C2'" E DA 14 ? ? "C1'" E DA 14 ? ? 96.75 102.40 -5.65 0.80 N 12 1 "O4'" F DT 15 ? ? "C1'" F DT 15 ? ? N1 F DT 15 ? ? 112.65 108.30 4.35 0.30 N 13 1 "O4'" F DC 16 ? ? "C1'" F DC 16 ? ? N1 F DC 16 ? ? 111.01 108.30 2.71 0.30 N 14 1 "O4'" F DC 19 ? ? "C4'" F DC 19 ? ? "C3'" F DC 19 ? ? 101.01 104.50 -3.49 0.40 N 15 1 "O4'" F DA 20 ? ? "C1'" F DA 20 ? ? N9 F DA 20 ? ? 113.57 108.30 5.27 0.30 N 16 1 "O5'" F DG 21 ? ? "C5'" F DG 21 ? ? "C4'" F DG 21 ? ? 103.00 109.40 -6.40 0.80 N 17 1 "C3'" F DG 21 ? ? "O3'" F DG 21 ? ? P F DC 22 ? ? 128.92 119.70 9.22 1.20 Y 18 1 "O4'" F DT 23 ? ? "C4'" F DT 23 ? ? "C3'" F DT 23 ? ? 99.91 104.50 -4.59 0.40 N 19 1 "O4'" F DT 25 ? ? "C1'" F DT 25 ? ? N1 F DT 25 ? ? 103.12 108.00 -4.88 0.70 N 20 1 "O4'" F DT 26 ? ? "C1'" F DT 26 ? ? N1 F DT 26 ? ? 114.22 108.30 5.92 0.30 N 21 1 "C3'" F DA 28 ? ? "C2'" F DA 28 ? ? "C1'" F DA 28 ? ? 95.91 102.40 -6.49 0.80 N 22 1 "O4'" G DT 29 ? ? "C1'" G DT 29 ? ? N1 G DT 29 ? ? 111.62 108.30 3.32 0.30 N 23 1 "O4'" G DC 30 ? ? "C1'" G DC 30 ? ? N1 G DC 30 ? ? 111.39 108.30 3.09 0.30 N 24 1 "O4'" G DA 31 ? ? "C1'" G DA 31 ? ? N9 G DA 31 ? ? 103.41 108.00 -4.59 0.70 N 25 1 P G DA 32 ? ? "O5'" G DA 32 ? ? "C5'" G DA 32 ? ? 108.81 120.90 -12.09 1.60 N 26 1 P G DC 33 ? ? "O5'" G DC 33 ? ? "C5'" G DC 33 ? ? 110.27 120.90 -10.63 1.60 N 27 1 "O4'" G DA 34 ? ? "C1'" G DA 34 ? ? N9 G DA 34 ? ? 112.94 108.30 4.64 0.30 N 28 1 "O5'" G DG 35 ? ? "C5'" G DG 35 ? ? "C4'" G DG 35 ? ? 103.72 109.40 -5.68 0.80 N 29 1 "C1'" G DC 36 ? ? "O4'" G DC 36 ? ? "C4'" G DC 36 ? ? 103.08 110.10 -7.02 1.00 N 30 1 "O4'" G DT 37 ? ? "C4'" G DT 37 ? ? "C3'" G DT 37 ? ? 100.54 104.50 -3.96 0.40 N 31 1 "O4'" G DT 37 ? ? "C1'" G DT 37 ? ? N1 G DT 37 ? ? 110.91 108.30 2.61 0.30 N 32 1 "O4'" G DT 39 ? ? "C1'" G DT 39 ? ? N1 G DT 39 ? ? 101.34 108.00 -6.66 0.70 N 33 1 "O4'" G DT 40 ? ? "C1'" G DT 40 ? ? N1 G DT 40 ? ? 113.02 108.30 4.72 0.30 N 34 1 "C3'" G DA 42 ? ? "C2'" G DA 42 ? ? "C1'" G DA 42 ? ? 97.42 102.40 -4.98 0.80 N 35 1 "O4'" G DA 42 ? ? "C1'" G DA 42 ? ? N9 G DA 42 ? ? 110.30 108.30 2.00 0.30 N 36 1 "O4'" H DT 43 ? ? "C1'" H DT 43 ? ? N1 H DT 43 ? ? 112.01 108.30 3.71 0.30 N 37 1 "O4'" H DC 47 ? ? "C4'" H DC 47 ? ? "C3'" H DC 47 ? ? 99.32 104.50 -5.18 0.40 N 38 1 "O4'" H DA 48 ? ? "C1'" H DA 48 ? ? N9 H DA 48 ? ? 114.87 108.30 6.57 0.30 N 39 1 "C3'" H DA 48 ? ? "O3'" H DA 48 ? ? P H DG 49 ? ? 127.02 119.70 7.32 1.20 Y 40 1 "C3'" H DG 49 ? ? "O3'" H DG 49 ? ? P H DC 50 ? ? 128.00 119.70 8.30 1.20 Y 41 1 "O4'" H DT 51 ? ? "C4'" H DT 51 ? ? "C3'" H DT 51 ? ? 99.79 104.50 -4.71 0.40 N 42 1 "O4'" H DT 51 ? ? "C1'" H DT 51 ? ? N1 H DT 51 ? ? 111.53 108.30 3.23 0.30 N 43 1 "O4'" H DT 53 ? ? "C1'" H DT 53 ? ? N1 H DT 53 ? ? 101.83 108.00 -6.17 0.70 N 44 1 "O4'" H DT 54 ? ? "C1'" H DT 54 ? ? N1 H DT 54 ? ? 113.19 108.30 4.89 0.30 N 45 1 "O4'" H DA 56 ? ? "C1'" H DA 56 ? ? N9 H DA 56 ? ? 110.54 108.30 2.24 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 102 ? ? -143.86 -159.47 2 1 LYS A 104 ? ? -156.12 -53.05 3 1 THR A 105 ? ? -88.61 31.87 4 1 SER A 135 ? ? -106.80 -61.73 5 1 THR A 136 ? ? -54.42 -79.63 6 1 GLN A 142 ? ? -75.95 -162.97 7 1 ARG A 143 ? ? -157.28 70.18 8 1 LEU A 163 ? ? -61.25 10.73 9 1 LEU A 164 ? ? -150.48 12.34 10 1 ASN B 107 ? ? -74.43 24.03 11 1 ARG B 119 ? ? -51.33 -70.78 12 1 LEU B 163 ? ? -84.47 35.88 13 1 LEU B 164 ? ? -165.33 54.02 14 1 ASN C 107 ? ? -94.30 -62.08 15 1 SER C 135 ? ? -146.94 -9.91 16 1 SER C 138 ? ? -66.37 -84.04 17 1 ASN C 139 ? ? -56.96 102.17 18 1 GLN C 142 ? ? -52.29 103.90 19 1 THR D 106 ? ? -69.80 25.17 20 1 ASN D 107 ? ? -122.02 -67.39 21 1 THR D 115 ? ? -99.94 -62.07 22 1 ASN D 139 ? ? -57.89 99.06 23 1 ASN D 141 ? ? 70.81 -40.92 24 1 ARG D 165 ? ? -167.26 -87.36 # _pdbx_entry_details.entry_id 1MDY _pdbx_entry_details.compound_details ;DNA SYNTHETIC OLIGONUCLEOTIDE OF 14 BASE PAIRS, CONTAINING THE OPTIMIZED DNA BINDING SITE FOR THE MYOD HOMODIMER: 5'-(TCAACAGCTGTTGA)-3'. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE PROTEIN RESIDUES ARE NUMBERED ACCORDING TO THE NATIVE SCHEME FOR MOUSE MYOD PROTEIN. THERE ARE FOUR SEPARATE MYOD MONOMERS IN THE ASYMMETRIC UNIT, WHICH HAVE BEEN ASSIGNED CHAIN IDENTIFIERS A, B, C, AND D. MONOMER A FORMS A DIMER WITH MONOMER B; MONOMER C FORMS A DIMER WITH MONOMER D. THERE ARE FOUR DNA STRANDS IN THE ASYMMETRIC UNIT, WHICH HAVE BEEN ASSIGNED CHAIN IDENTIFIERS E, F, G, AND H. STRAND E FORMS A DOUBLE STRAND WITH F, WHILE G AND H FORM THE OTHER DOUBLE STRAND. MYOD DIMER AB IS BOUND TO DNA DOUBLE STRAND EF. MYOD DIMER CD IS BOUND TO DNA DOUBLE STRAND GH. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HOH O O N N 266 HOH H1 H N N 267 HOH H2 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 THR N N N N 412 THR CA C N S 413 THR C C N N 414 THR O O N N 415 THR CB C N R 416 THR OG1 O N N 417 THR CG2 C N N 418 THR OXT O N N 419 THR H H N N 420 THR H2 H N N 421 THR HA H N N 422 THR HB H N N 423 THR HG1 H N N 424 THR HG21 H N N 425 THR HG22 H N N 426 THR HG23 H N N 427 THR HXT H N N 428 TYR N N N N 429 TYR CA C N S 430 TYR C C N N 431 TYR O O N N 432 TYR CB C N N 433 TYR CG C Y N 434 TYR CD1 C Y N 435 TYR CD2 C Y N 436 TYR CE1 C Y N 437 TYR CE2 C Y N 438 TYR CZ C Y N 439 TYR OH O N N 440 TYR OXT O N N 441 TYR H H N N 442 TYR H2 H N N 443 TYR HA H N N 444 TYR HB2 H N N 445 TYR HB3 H N N 446 TYR HD1 H N N 447 TYR HD2 H N N 448 TYR HE1 H N N 449 TYR HE2 H N N 450 TYR HH H N N 451 TYR HXT H N N 452 VAL N N N N 453 VAL CA C N S 454 VAL C C N N 455 VAL O O N N 456 VAL CB C N N 457 VAL CG1 C N N 458 VAL CG2 C N N 459 VAL OXT O N N 460 VAL H H N N 461 VAL H2 H N N 462 VAL HA H N N 463 VAL HB H N N 464 VAL HG11 H N N 465 VAL HG12 H N N 466 VAL HG13 H N N 467 VAL HG21 H N N 468 VAL HG22 H N N 469 VAL HG23 H N N 470 VAL HXT H N N 471 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MDY 'double helix' 1MDY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 14 1_555 -0.301 -0.481 -0.559 7.518 -9.850 -2.463 1 E_DT1:DA28_F E 1 ? F 28 ? 20 1 1 A DC 2 1_555 B DG 13 1_555 0.081 -0.385 -0.005 6.261 -9.197 -1.234 2 E_DC2:DG27_F E 2 ? F 27 ? 19 1 1 A DA 3 1_555 B DT 12 1_555 -0.366 -0.337 -0.058 0.034 -10.304 -1.135 3 E_DA3:DT26_F E 3 ? F 26 ? 20 1 1 A DA 4 1_555 B DT 11 1_555 -0.257 -0.214 0.040 -1.556 -11.656 -5.761 4 E_DA4:DT25_F E 4 ? F 25 ? 20 1 1 A DC 5 1_555 B DG 10 1_555 0.480 0.143 0.241 -3.751 -10.079 2.078 5 E_DC5:DG24_F E 5 ? F 24 ? 19 1 1 A DA 6 1_555 B DT 9 1_555 1.042 -0.286 0.646 18.405 -21.875 -1.545 6 E_DA6:DT23_F E 6 ? F 23 ? 20 1 1 A DG 7 1_555 B DC 8 1_555 0.305 -0.359 0.534 5.216 -12.722 -4.418 7 E_DG7:DC22_F E 7 ? F 22 ? 19 1 1 A DC 8 1_555 B DG 7 1_555 -0.241 -0.269 0.621 -5.703 -12.039 -2.988 8 E_DC8:DG21_F E 8 ? F 21 ? 19 1 1 A DT 9 1_555 B DA 6 1_555 -0.963 -0.277 0.780 -17.672 -21.585 -1.282 9 E_DT9:DA20_F E 9 ? F 20 ? 20 1 1 A DG 10 1_555 B DC 5 1_555 -0.417 0.122 0.115 2.985 -10.768 3.513 10 E_DG10:DC19_F E 10 ? F 19 ? 19 1 1 A DT 11 1_555 B DA 4 1_555 0.265 -0.349 0.011 3.352 -11.314 -4.626 11 E_DT11:DA18_F E 11 ? F 18 ? 20 1 1 A DT 12 1_555 B DA 3 1_555 0.321 -0.441 0.009 0.957 -13.601 0.469 12 E_DT12:DA17_F E 12 ? F 17 ? 20 1 1 A DG 13 1_555 B DC 2 1_555 -0.241 -0.359 -0.038 -7.187 -10.173 0.127 13 E_DG13:DC16_F E 13 ? F 16 ? 19 1 1 A DA 14 1_555 B DT 1 1_555 0.211 -0.347 -0.388 -4.144 -9.021 -1.324 14 E_DA14:DT15_F E 14 ? F 15 ? 20 1 1 D DT 1 1_555 C DA 14 1_555 -0.308 -0.454 -0.381 5.073 -8.134 -1.588 15 H_DT43:DA42_G H 43 ? G 42 ? 20 1 1 D DC 2 1_555 C DG 13 1_555 0.194 -0.424 -0.004 7.017 -7.097 -0.448 16 H_DC44:DG41_G H 44 ? G 41 ? 19 1 1 D DA 3 1_555 C DT 12 1_555 -0.359 -0.487 -0.043 -0.490 -11.256 0.530 17 H_DA45:DT40_G H 45 ? G 40 ? 20 1 1 D DA 4 1_555 C DT 11 1_555 -0.349 -0.424 -0.067 -0.083 -8.844 -4.236 18 H_DA46:DT39_G H 46 ? G 39 ? 20 1 1 D DC 5 1_555 C DG 10 1_555 0.357 0.047 0.242 -1.743 -9.240 3.773 19 H_DC47:DG38_G H 47 ? G 38 ? 19 1 1 D DA 6 1_555 C DT 9 1_555 0.764 -0.344 0.576 17.932 -19.670 -0.482 20 H_DA48:DT37_G H 48 ? G 37 ? 20 1 1 D DG 7 1_555 C DC 8 1_555 -0.019 -0.240 0.606 3.359 -11.595 -3.335 21 H_DG49:DC36_G H 49 ? G 36 ? 19 1 1 D DC 8 1_555 C DG 7 1_555 -0.205 -0.105 0.394 -3.717 -12.071 -3.821 22 H_DC50:DG35_G H 50 ? G 35 ? 19 1 1 D DT 9 1_555 C DA 6 1_555 -0.810 -0.248 0.622 -15.608 -20.023 -1.743 23 H_DT51:DA34_G H 51 ? G 34 ? 20 1 1 D DG 10 1_555 C DC 5 1_555 -0.295 0.088 0.202 1.997 -9.834 3.438 24 H_DG52:DC33_G H 52 ? G 33 ? 19 1 1 D DT 11 1_555 C DA 4 1_555 0.318 -0.411 0.140 1.695 -10.593 -4.949 25 H_DT53:DA32_G H 53 ? G 32 ? 20 1 1 D DT 12 1_555 C DA 3 1_555 0.250 -0.525 0.024 -1.035 -13.889 0.538 26 H_DT54:DA31_G H 54 ? G 31 ? 20 1 1 D DG 13 1_555 C DC 2 1_555 -0.379 -0.361 -0.094 -6.939 -9.947 0.249 27 H_DG55:DC30_G H 55 ? G 30 ? 19 1 1 D DA 14 1_555 C DT 1 1_555 0.128 -0.237 -0.362 -4.666 -8.643 -1.868 28 H_DA56:DT29_G H 56 ? G 29 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 14 1_555 A DC 2 1_555 B DG 13 1_555 0.486 0.067 3.596 -1.394 9.415 30.312 -1.783 -1.170 3.437 17.471 2.587 31.738 1 EE_DT1DC2:DG27DA28_FF E 1 ? F 28 ? E 2 ? F 27 ? 1 A DC 2 1_555 B DG 13 1_555 A DA 3 1_555 B DT 12 1_555 -0.402 1.586 3.538 -0.465 0.028 40.922 2.265 0.519 3.543 0.040 0.665 40.925 2 EE_DC2DA3:DT26DG27_FF E 2 ? F 27 ? E 3 ? F 26 ? 1 A DA 3 1_555 B DT 12 1_555 A DA 4 1_555 B DT 11 1_555 -0.149 -0.209 3.459 0.401 5.387 31.980 -1.372 0.342 3.377 9.690 -0.722 32.421 3 EE_DA3DA4:DT25DT26_FF E 3 ? F 26 ? E 4 ? F 25 ? 1 A DA 4 1_555 B DT 11 1_555 A DC 5 1_555 B DG 10 1_555 1.026 -0.535 3.387 -0.890 0.671 32.770 -1.067 -1.974 3.347 1.189 1.578 32.788 4 EE_DA4DC5:DG24DT25_FF E 4 ? F 25 ? E 5 ? F 24 ? 1 A DC 5 1_555 B DG 10 1_555 A DA 6 1_555 B DT 9 1_555 0.130 0.923 2.973 0.994 9.118 38.823 0.361 -0.083 3.106 13.489 -1.471 39.851 5 EE_DC5DA6:DT23DG24_FF E 5 ? F 24 ? E 6 ? F 23 ? 1 A DA 6 1_555 B DT 9 1_555 A DG 7 1_555 B DC 8 1_555 -0.644 -0.583 3.639 -2.444 2.249 32.458 -1.472 0.674 3.629 4.010 4.359 32.623 6 EE_DA6DG7:DC22DT23_FF E 6 ? F 23 ? E 7 ? F 22 ? 1 A DG 7 1_555 B DC 8 1_555 A DC 8 1_555 B DG 7 1_555 0.180 -0.576 3.504 -2.035 8.170 28.729 -2.888 -0.790 3.202 16.036 3.994 29.912 7 EE_DG7DC8:DG21DC22_FF E 7 ? F 22 ? E 8 ? F 21 ? 1 A DC 8 1_555 B DG 7 1_555 A DT 9 1_555 B DA 6 1_555 0.546 -0.640 3.621 1.942 1.466 32.184 -1.440 -0.600 3.615 2.640 -3.497 32.273 8 EE_DC8DT9:DA20DG21_FF E 8 ? F 21 ? E 9 ? F 20 ? 1 A DT 9 1_555 B DA 6 1_555 A DG 10 1_555 B DC 5 1_555 -0.164 0.929 2.961 0.317 9.237 39.025 0.365 0.274 3.092 13.596 -0.467 40.063 9 EE_DT9DG10:DC19DA20_FF E 9 ? F 20 ? E 10 ? F 19 ? 1 A DG 10 1_555 B DC 5 1_555 A DT 11 1_555 B DA 4 1_555 -1.033 -0.467 3.334 -0.326 -0.050 32.840 -0.816 1.770 3.345 -0.089 0.576 32.842 10 EE_DG10DT11:DA18DC19_FF E 10 ? F 19 ? E 11 ? F 18 ? 1 A DT 11 1_555 B DA 4 1_555 A DT 12 1_555 B DA 3 1_555 0.150 -0.228 3.450 -0.242 5.502 31.887 -1.430 -0.314 3.364 9.922 0.437 32.347 11 EE_DT11DT12:DA17DA18_FF E 11 ? F 18 ? E 12 ? F 17 ? 1 A DT 12 1_555 B DA 3 1_555 A DG 13 1_555 B DC 2 1_555 0.423 1.571 3.631 0.622 1.091 40.661 2.125 -0.532 3.676 1.570 -0.895 40.679 12 EE_DT12DG13:DC16DA17_FF E 12 ? F 17 ? E 13 ? F 16 ? 1 A DG 13 1_555 B DC 2 1_555 A DA 14 1_555 B DT 1 1_555 -0.494 0.071 3.393 0.013 8.392 30.676 -1.473 0.906 3.297 15.502 -0.025 31.777 13 EE_DG13DA14:DT15DC16_FF E 13 ? F 16 ? E 14 ? F 15 ? 1 A DA 14 1_555 B DT 1 1_555 D DT 1 1_555 C DA 14 1_555 0.184 2.054 2.632 2.720 -10.983 84.686 1.711 -0.087 2.407 -8.121 -2.011 85.297 14 EH_DA14DT43:DA42DT15_GF E 14 ? F 15 ? H 43 ? G 42 ? 1 D DT 1 1_555 C DA 14 1_555 D DC 2 1_555 C DG 13 1_555 0.456 0.046 3.464 -1.057 6.892 30.980 -1.257 -1.040 3.379 12.702 1.948 31.736 15 HH_DT43DC44:DG41DA42_GG H 43 ? G 42 ? H 44 ? G 41 ? 1 D DC 2 1_555 C DG 13 1_555 D DA 3 1_555 C DT 12 1_555 -0.371 1.523 3.651 0.115 -0.058 40.552 2.205 0.549 3.648 -0.084 -0.166 40.552 16 HH_DC44DA45:DT40DG41_GG H 44 ? G 41 ? H 45 ? G 40 ? 1 D DA 3 1_555 C DT 12 1_555 D DA 4 1_555 C DT 11 1_555 -0.106 -0.241 3.402 1.264 4.315 31.687 -1.243 0.429 3.334 7.852 -2.301 31.996 17 HH_DA45DA46:DT39DT40_GG H 45 ? G 40 ? H 46 ? G 39 ? 1 D DA 4 1_555 C DT 11 1_555 D DC 5 1_555 C DG 10 1_555 1.082 -0.525 3.361 -0.919 1.946 33.277 -1.244 -2.041 3.296 3.393 1.603 33.344 18 HH_DA46DC47:DG38DT39_GG H 46 ? G 39 ? H 47 ? G 38 ? 1 D DC 5 1_555 C DG 10 1_555 D DA 6 1_555 C DT 9 1_555 0.119 0.922 3.030 1.627 8.160 38.918 0.450 0.006 3.154 12.079 -2.408 39.764 19 HH_DC47DA48:DT37DG38_GG H 47 ? G 38 ? H 48 ? G 37 ? 1 D DA 6 1_555 C DT 9 1_555 D DG 7 1_555 C DC 8 1_555 -0.617 -0.656 3.638 -3.742 3.025 32.011 -1.772 0.371 3.609 5.447 6.738 32.361 20 HH_DA48DG49:DC36DT37_GG H 48 ? G 37 ? H 49 ? G 36 ? 1 D DG 7 1_555 C DC 8 1_555 D DC 8 1_555 C DG 7 1_555 -0.208 -0.666 3.436 2.335 7.522 28.504 -2.939 0.914 3.135 14.920 -4.631 29.550 21 HH_DG49DC50:DG35DC36_GG H 49 ? G 36 ? H 50 ? G 35 ? 1 D DC 8 1_555 C DG 7 1_555 D DT 9 1_555 C DA 6 1_555 0.659 -0.641 3.540 1.597 3.814 32.337 -1.856 -0.874 3.471 6.812 -2.854 32.593 22 HH_DC50DT51:DA34DG35_GG H 50 ? G 35 ? H 51 ? G 34 ? 1 D DT 9 1_555 C DA 6 1_555 D DG 10 1_555 C DC 5 1_555 -0.134 0.896 3.112 -0.610 8.910 39.060 0.306 0.126 3.234 13.118 0.898 40.029 23 HH_DT51DG52:DC33DA34_GG H 51 ? G 34 ? H 52 ? G 33 ? 1 D DG 10 1_555 C DC 5 1_555 D DT 11 1_555 C DA 4 1_555 -1.054 -0.546 3.337 -0.487 -0.372 33.050 -0.896 1.769 3.357 -0.653 0.856 33.055 24 HH_DG52DT53:DA32DC33_GG H 52 ? G 33 ? H 53 ? G 32 ? 1 D DT 11 1_555 C DA 4 1_555 D DT 12 1_555 C DA 3 1_555 0.116 -0.287 3.444 -0.046 5.367 31.733 -1.522 -0.218 3.352 9.727 0.083 32.172 25 HH_DT53DT54:DA31DA32_GG H 53 ? G 32 ? H 54 ? G 31 ? 1 D DT 12 1_555 C DA 3 1_555 D DG 13 1_555 C DC 2 1_555 0.376 1.548 3.568 0.856 0.154 40.901 2.197 -0.435 3.580 0.221 -1.225 40.910 26 HH_DT54DG55:DC30DA31_GG H 54 ? G 31 ? H 55 ? G 30 ? 1 D DG 13 1_555 C DC 2 1_555 D DA 14 1_555 C DT 1 1_555 -0.463 0.060 3.421 -0.829 6.432 30.642 -1.165 0.694 3.375 12.002 1.547 31.305 27 HH_DG55DA56:DT29DC30_GG H 55 ? G 30 ? H 56 ? G 29 ? # _atom_sites.entry_id 1MDY _atom_sites.fract_transf_matrix[1][1] 0.004488 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014124 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_