data_1MF4 # _entry.id 1MF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1MF4 RCSB RCSB016865 WWPDB D_1000016865 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LFF '1lff is the Crystal Structure of an Acidic Phospholipase A2 from Naja naja sagittifera at 1.5 A Resolution' unspecified PDB 1LN8 '1ln8 is the Crystal Structure of a New Isoform of Phospholipase A2 from Naja naja sagittifera at 1.6 A Resolution' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MF4 _pdbx_database_status.recvd_initial_deposition_date 2002-08-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, R.K.' 1 'Vikram, P.' 2 'Paramsivam, M.' 3 'Jabeen, T.' 4 'Sharma, S.' 5 'Makker, J.' 6 'Dey, S.' 7 'Kaur, P.' 8 'Srinivasan, A.' 9 'Singh, T.P.' 10 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Design of specific peptide inhibitors for group I phospholipase A2: structure of a complex formed between phospholipase A2 from Naja naja sagittifera (group I) and a designed peptide inhibitor Val-Ala-Phe-Arg-Ser (VAFRS) at 1.9 A resolution reveals unique features ; Biochemistry 42 11701 11706 2003 BICHAW US 0006-2960 0033 ? 14529280 10.1021/bi035076x 1 'Crystal Structure of an Acidic Phospholipase A2 from Naja naja sagittifera at 1.5 A Resolution' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 2 'Crystal Structure of a New Isoform of Phospholipase A2 from Naja naja sagittifera at 1.6 A Resolution' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Singh, R.K.' 1 primary 'Vikram, P.' 2 primary 'Makker, J.' 3 primary 'Jabeen, T.' 4 primary 'Sharma, S.' 5 primary 'Dey, S.' 6 primary 'Kaur, P.' 7 primary 'Srinivasan, A.' 8 primary 'Singh, T.P.' 9 1 'Singh, R.K.' 10 1 'Sharma, S.' 11 1 'Jabeen, T.' 12 1 'Kaur, P.' 13 1 'Singh, T.P.' 14 2 'Singh, R.K.' 15 2 'Vikram, P.' 16 2 'Paramasivam, M.' 17 2 'Jabeen, T.' 18 2 'Sharma, S.' 19 2 'Kaur, P.' 20 2 'Srinivasan, A.' 21 2 'Singh, T.P.' 22 # _cell.entry_id 1MF4 _cell.length_a 42.779 _cell.length_b 42.779 _cell.length_c 65.866 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1MF4 _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Phospholipase A2' 13128.515 1 3.1.1.4 ? ? ? 2 polymer syn VAL-ALA-PHE-ARG-SER 579.669 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 105 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKG DNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARCN ; ;NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKG DNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARCN ; A ? 2 'polypeptide(L)' no no VAFRS VAFRS B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 TYR n 1 4 GLN n 1 5 PHE n 1 6 LYS n 1 7 ASN n 1 8 MET n 1 9 ILE n 1 10 GLN n 1 11 CYS n 1 12 THR n 1 13 VAL n 1 14 PRO n 1 15 SER n 1 16 ARG n 1 17 SER n 1 18 TRP n 1 19 ALA n 1 20 ASP n 1 21 PHE n 1 22 ALA n 1 23 ASP n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 TYR n 1 28 CYS n 1 29 GLY n 1 30 LYS n 1 31 GLY n 1 32 GLY n 1 33 SER n 1 34 GLY n 1 35 THR n 1 36 PRO n 1 37 VAL n 1 38 ASP n 1 39 ASP n 1 40 LEU n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 GLN n 1 46 THR n 1 47 HIS n 1 48 ASP n 1 49 ASN n 1 50 CYS n 1 51 TYR n 1 52 ASN n 1 53 GLU n 1 54 ALA n 1 55 GLU n 1 56 ASN n 1 57 ILE n 1 58 SER n 1 59 GLY n 1 60 CYS n 1 61 ARG n 1 62 PRO n 1 63 TYR n 1 64 PHE n 1 65 LYS n 1 66 THR n 1 67 TYR n 1 68 SER n 1 69 TYR n 1 70 GLU n 1 71 CYS n 1 72 THR n 1 73 GLN n 1 74 GLY n 1 75 THR n 1 76 LEU n 1 77 THR n 1 78 CYS n 1 79 LYS n 1 80 GLY n 1 81 ASP n 1 82 ASN n 1 83 ASN n 1 84 ALA n 1 85 CYS n 1 86 ALA n 1 87 ALA n 1 88 SER n 1 89 VAL n 1 90 CYS n 1 91 ASP n 1 92 CYS n 1 93 ASP n 1 94 ARG n 1 95 LEU n 1 96 ALA n 1 97 ALA n 1 98 ILE n 1 99 CYS n 1 100 PHE n 1 101 ALA n 1 102 GLY n 1 103 ALA n 1 104 PRO n 1 105 TYR n 1 106 ASN n 1 107 ASP n 1 108 ALA n 1 109 ASN n 1 110 TYR n 1 111 ASN n 1 112 ILE n 1 113 ASP n 1 114 LEU n 1 115 LYS n 1 116 ALA n 1 117 ARG n 1 118 CYS n 1 119 ASN n 2 1 VAL n 2 2 ALA n 2 3 PHE n 2 4 ARG n 2 5 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Naja sagittifera' _entity_src_nat.pdbx_ncbi_taxonomy_id 195058 _entity_src_nat.genus Naja _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion Venom _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This peptide was chemically synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP PA23_NAJSG P60045 1 8 ? ? 2 PDB 1MF4 1MF4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MF4 A 1 ? 119 ? P60045 8 ? 126 ? 1 120 2 2 1MF4 B 1 ? 5 ? 1MF4 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1MF4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.1 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details ;sodium phosphate, CaCl2, ethanol; Co-crystallation of protein: peptide in 1:10 molar ratio, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K, pH 6.00 ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 290.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-06-10 _diffrn_detector.details MONOCHROMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MF4 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 8247 _reflns.number_all ? _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_sigmaI 19.3000 _reflns.B_iso_Wilson_estimate 20.63 _reflns.pdbx_redundancy 1.040 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 61.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.289 _reflns_shell.meanI_over_sigI_obs 1.900 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1MF4 _refine.ls_number_reflns_obs 8247 _refine.ls_number_reflns_all 8247 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.54 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 411 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 25.50 _refine.aniso_B[1][1] -0.24000 _refine.aniso_B[2][2] -0.24000 _refine.aniso_B[3][3] 0.49000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1LN8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.180 _refine.pdbx_overall_ESU_R_Free 0.165 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 3.811 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 950 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1056 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 975 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.748 1.937 ? 1322 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.468 3.000 ? 121 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 17.004 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.004 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.109 0.200 ? 135 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 773 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.292 0.300 ? 456 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.167 0.500 ? 82 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.449 0.300 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.689 0.500 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.880 1.500 ? 613 'X-RAY DIFFRACTION' ? r_mcangle_it 1.769 2.000 ? 971 'X-RAY DIFFRACTION' ? r_scbond_it 2.472 3.000 ? 362 'X-RAY DIFFRACTION' ? r_scangle_it 3.903 4.500 ? 351 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 314 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.27 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1MF4 _struct.title ;Structure-based design of potent and selective inhibitors of phospholipase A2: Crystal structure of the complex formed between phosholipase A2 from Naja Naja sagittifera and a designed peptide inhibitor at 1.9 A resolution ; _struct.pdbx_descriptor 'Phospholipase A2 (E.C.3.1.1.4)/VAL-ALA-PHE-ARG-SER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MF4 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Naja naja sagittifera, phospholipase A2, designed inhibitor, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 1 ? VAL A 13 ? ASN A 1 VAL A 13 1 ? 13 HELX_P HELX_P2 2 SER A 17 ? ALA A 22 ? SER A 18 ALA A 23 5 ? 6 HELX_P HELX_P3 3 ASP A 38 ? GLU A 55 ? ASP A 39 GLU A 56 1 ? 18 HELX_P HELX_P4 4 ASN A 83 ? GLY A 102 ? ASN A 84 GLY A 103 1 ? 20 HELX_P HELX_P5 5 ASN A 106 ? TYR A 110 ? ASN A 107 TYR A 111 5 ? 5 HELX_P HELX_P6 6 ASP A 113 ? CYS A 118 ? ASP A 114 CYS A 119 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 11 A CYS 72 1_555 ? ? ? ? ? ? ? 2.063 ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 118 SG ? ? A CYS 27 A CYS 119 1_555 ? ? ? ? ? ? ? 2.023 ? disulf3 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.045 ? disulf4 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 44 A CYS 100 1_555 ? ? ? ? ? ? ? 2.013 ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 51 A CYS 93 1_555 ? ? ? ? ? ? ? 2.016 ? disulf6 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 61 A CYS 86 1_555 ? ? ? ? ? ? ? 2.012 ? disulf7 disulf ? ? A CYS 78 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 79 A CYS 91 1_555 ? ? ? ? ? ? ? 2.024 ? metalc1 metalc ? ? C CA . CA ? ? ? 1_555 A LYS 30 O ? ? A CA 201 A LYS 31 1_555 ? ? ? ? ? ? ? 2.560 ? metalc2 metalc ? ? C CA . CA ? ? ? 1_555 A GLY 31 O ? ? A CA 201 A GLY 32 1_555 ? ? ? ? ? ? ? 2.437 ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 A TYR 27 O ? ? A CA 201 A TYR 28 1_555 ? ? ? ? ? ? ? 2.763 ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 48 OD2 ? ? A CA 201 A ASP 49 1_555 ? ? ? ? ? ? ? 2.519 ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 48 OD1 ? ? A CA 201 A ASP 49 1_555 ? ? ? ? ? ? ? 3.003 ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 244 1_555 ? ? ? ? ? ? ? 2.583 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 69 ? THR A 72 ? TYR A 70 THR A 73 A 2 THR A 75 ? CYS A 78 ? THR A 76 CYS A 79 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 70 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 71 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 77 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software ? ? ? ? 20 'BINDING SITE FOR CHAIN B OF VAL-ALA-PHE-ARG-SER' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR A 27 ? TYR A 28 . ? 1_555 ? 2 AC1 6 LYS A 30 ? LYS A 31 . ? 1_555 ? 3 AC1 6 GLY A 31 ? GLY A 32 . ? 1_555 ? 4 AC1 6 ASP A 48 ? ASP A 49 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 244 . ? 1_555 ? 6 AC1 6 ARG B 4 ? ARG B 4 . ? 1_555 ? 7 AC2 20 PHE A 5 ? PHE A 5 . ? 1_555 ? 8 AC2 20 LYS A 6 ? LYS A 6 . ? 1_555 ? 9 AC2 20 ILE A 9 ? ILE A 9 . ? 1_555 ? 10 AC2 20 TRP A 18 ? TRP A 19 . ? 1_555 ? 11 AC2 20 PHE A 21 ? PHE A 22 . ? 1_555 ? 12 AC2 20 ALA A 22 ? ALA A 23 . ? 1_555 ? 13 AC2 20 TYR A 27 ? TYR A 28 . ? 1_555 ? 14 AC2 20 GLY A 29 ? GLY A 30 . ? 1_555 ? 15 AC2 20 LYS A 30 ? LYS A 31 . ? 1_555 ? 16 AC2 20 ASP A 39 ? ASP A 40 . ? 3_655 ? 17 AC2 20 ARG A 42 ? ARG A 43 . ? 3_655 ? 18 AC2 20 CYS A 43 ? CYS A 44 . ? 3_655 ? 19 AC2 20 CYS A 44 ? CYS A 45 . ? 1_555 ? 20 AC2 20 THR A 46 ? THR A 47 . ? 3_655 ? 21 AC2 20 HIS A 47 ? HIS A 48 . ? 1_555 ? 22 AC2 20 ASP A 48 ? ASP A 49 . ? 1_555 ? 23 AC2 20 TYR A 63 ? TYR A 64 . ? 1_555 ? 24 AC2 20 CYS A 99 ? CYS A 100 . ? 3_655 ? 25 AC2 20 CA C . ? CA A 201 . ? 1_555 ? 26 AC2 20 HOH E . ? HOH B 88 . ? 1_555 ? # _database_PDB_matrix.entry_id 1MF4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MF4 _atom_sites.fract_transf_matrix[1][1] 0.023376 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023376 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015182 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 SER 17 18 18 SER SER A . n A 1 18 TRP 18 19 19 TRP TRP A . n A 1 19 ALA 19 20 20 ALA ALA A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 PHE 21 22 22 PHE PHE A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 ASP 23 24 24 ASP ASP A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 CYS 26 27 27 CYS CYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 LYS 30 31 31 LYS LYS A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 SER 33 34 34 SER SER A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 THR 35 36 36 THR THR A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 ASP 39 40 40 ASP ASP A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 CYS 43 44 44 CYS CYS A . n A 1 44 CYS 44 45 45 CYS CYS A . n A 1 45 GLN 45 46 46 GLN GLN A . n A 1 46 THR 46 47 47 THR THR A . n A 1 47 HIS 47 48 48 HIS HIS A . n A 1 48 ASP 48 49 49 ASP ASP A . n A 1 49 ASN 49 50 50 ASN ASN A . n A 1 50 CYS 50 51 51 CYS CYS A . n A 1 51 TYR 51 52 52 TYR TYR A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 GLU 53 54 54 GLU GLU A . n A 1 54 ALA 54 55 55 ALA ALA A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 ASN 56 57 57 ASN ASN A . n A 1 57 ILE 57 58 58 ILE ILE A . n A 1 58 SER 58 59 59 SER SER A . n A 1 59 GLY 59 60 60 GLY GLY A . n A 1 60 CYS 60 61 61 CYS CYS A . n A 1 61 ARG 61 62 62 ARG ARG A . n A 1 62 PRO 62 63 63 PRO PRO A . n A 1 63 TYR 63 64 64 TYR TYR A . n A 1 64 PHE 64 65 65 PHE PHE A . n A 1 65 LYS 65 66 66 LYS LYS A . n A 1 66 THR 66 67 67 THR THR A . n A 1 67 TYR 67 68 68 TYR TYR A . n A 1 68 SER 68 69 69 SER SER A . n A 1 69 TYR 69 70 70 TYR TYR A . n A 1 70 GLU 70 71 71 GLU GLU A . n A 1 71 CYS 71 72 72 CYS CYS A . n A 1 72 THR 72 73 73 THR THR A . n A 1 73 GLN 73 74 74 GLN GLN A . n A 1 74 GLY 74 75 75 GLY GLY A . n A 1 75 THR 75 76 76 THR THR A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 THR 77 78 78 THR THR A . n A 1 78 CYS 78 79 79 CYS CYS A . n A 1 79 LYS 79 80 80 LYS LYS A . n A 1 80 GLY 80 81 81 GLY GLY A . n A 1 81 ASP 81 82 82 ASP ASP A . n A 1 82 ASN 82 83 83 ASN ASN A . n A 1 83 ASN 83 84 84 ASN ASN A . n A 1 84 ALA 84 85 85 ALA ALA A . n A 1 85 CYS 85 86 86 CYS CYS A . n A 1 86 ALA 86 87 87 ALA ALA A . n A 1 87 ALA 87 88 88 ALA ALA A . n A 1 88 SER 88 89 89 SER SER A . n A 1 89 VAL 89 90 90 VAL VAL A . n A 1 90 CYS 90 91 91 CYS CYS A . n A 1 91 ASP 91 92 92 ASP ASP A . n A 1 92 CYS 92 93 93 CYS CYS A . n A 1 93 ASP 93 94 94 ASP ASP A . n A 1 94 ARG 94 95 95 ARG ARG A . n A 1 95 LEU 95 96 96 LEU LEU A . n A 1 96 ALA 96 97 97 ALA ALA A . n A 1 97 ALA 97 98 98 ALA ALA A . n A 1 98 ILE 98 99 99 ILE ILE A . n A 1 99 CYS 99 100 100 CYS CYS A . n A 1 100 PHE 100 101 101 PHE PHE A . n A 1 101 ALA 101 102 102 ALA ALA A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 PRO 104 105 105 PRO PRO A . n A 1 105 TYR 105 106 106 TYR TYR A . n A 1 106 ASN 106 107 107 ASN ASN A . n A 1 107 ASP 107 108 108 ASP ASP A . n A 1 108 ALA 108 109 109 ALA ALA A . n A 1 109 ASN 109 110 110 ASN ASN A . n A 1 110 TYR 110 111 111 TYR TYR A . n A 1 111 ASN 111 112 112 ASN ASN A . n A 1 112 ILE 112 113 113 ILE ILE A . n A 1 113 ASP 113 114 114 ASP ASP A . n A 1 114 LEU 114 115 115 LEU LEU A . n A 1 115 LYS 115 116 116 LYS LYS A . n A 1 116 ALA 116 117 117 ALA ALA A . n A 1 117 ARG 117 118 118 ARG ARG A . n A 1 118 CYS 118 119 119 CYS CYS A . n A 1 119 ASN 119 120 120 ASN ASN A . n B 2 1 VAL 1 1 1 VAL VAL B . n B 2 2 ALA 2 2 2 ALA ALA B . n B 2 3 PHE 3 3 3 PHE PHE B . n B 2 4 ARG 4 4 4 ARG ARG B . n B 2 5 SER 5 5 5 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -16 ? 1 'SSA (A^2)' 6720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 30 ? A LYS 31 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A GLY 31 ? A GLY 32 ? 1_555 56.7 ? 2 O ? A LYS 30 ? A LYS 31 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A TYR 27 ? A TYR 28 ? 1_555 112.3 ? 3 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A TYR 27 ? A TYR 28 ? 1_555 73.8 ? 4 O ? A LYS 30 ? A LYS 31 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 140.7 ? 5 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 87.0 ? 6 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 64.4 ? 7 O ? A LYS 30 ? A LYS 31 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 170.9 ? 8 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 131.2 ? 9 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 76.2 ? 10 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 45.1 ? 11 O ? A LYS 30 ? A LYS 31 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 244 ? 1_555 54.2 ? 12 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 244 ? 1_555 83.1 ? 13 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 244 ? 1_555 156.7 ? 14 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 244 ? 1_555 112.3 ? 15 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 244 ? 1_555 119.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-30 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 REFMAC refinement 5.0 ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A LYS 6 ? ? CD A LYS 6 ? ? CE A LYS 6 ? ? 142.80 111.90 30.90 3.00 N 2 1 CB A ASP 94 ? ? CG A ASP 94 ? ? OD2 A ASP 94 ? ? 124.92 118.30 6.62 0.90 N 3 1 CB B PHE 3 ? ? CA B PHE 3 ? ? C B PHE 3 ? ? 93.58 110.40 -16.82 2.00 N 4 1 CB B PHE 3 ? ? CG B PHE 3 ? ? CD2 B PHE 3 ? ? 116.51 120.80 -4.29 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 24 ? ? -156.11 77.44 2 1 LYS A 31 ? ? -116.05 -84.13 3 1 ASP A 82 ? ? -90.91 37.16 4 1 ALA B 2 ? ? -127.32 -64.40 5 1 PHE B 3 ? ? -167.45 -168.19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 201 201 CA CA A . D 4 HOH 1 202 1 HOH HOH A . D 4 HOH 2 203 2 HOH HOH A . D 4 HOH 3 204 3 HOH HOH A . D 4 HOH 4 205 4 HOH HOH A . D 4 HOH 5 206 5 HOH HOH A . D 4 HOH 6 207 6 HOH HOH A . D 4 HOH 7 208 7 HOH HOH A . D 4 HOH 8 209 8 HOH HOH A . D 4 HOH 9 210 9 HOH HOH A . D 4 HOH 10 211 10 HOH HOH A . D 4 HOH 11 212 11 HOH HOH A . D 4 HOH 12 213 12 HOH HOH A . D 4 HOH 13 214 13 HOH HOH A . D 4 HOH 14 215 14 HOH HOH A . D 4 HOH 15 216 15 HOH HOH A . D 4 HOH 16 217 16 HOH HOH A . D 4 HOH 17 218 17 HOH HOH A . D 4 HOH 18 219 18 HOH HOH A . D 4 HOH 19 220 19 HOH HOH A . D 4 HOH 20 221 20 HOH HOH A . D 4 HOH 21 222 21 HOH HOH A . D 4 HOH 22 223 22 HOH HOH A . D 4 HOH 23 224 23 HOH HOH A . D 4 HOH 24 225 24 HOH HOH A . D 4 HOH 25 226 25 HOH HOH A . D 4 HOH 26 227 26 HOH HOH A . D 4 HOH 27 228 27 HOH HOH A . D 4 HOH 28 229 28 HOH HOH A . D 4 HOH 29 230 29 HOH HOH A . D 4 HOH 30 231 30 HOH HOH A . D 4 HOH 31 232 31 HOH HOH A . D 4 HOH 32 233 32 HOH HOH A . D 4 HOH 33 234 33 HOH HOH A . D 4 HOH 34 235 34 HOH HOH A . D 4 HOH 35 236 35 HOH HOH A . D 4 HOH 36 237 36 HOH HOH A . D 4 HOH 37 238 37 HOH HOH A . D 4 HOH 38 239 38 HOH HOH A . D 4 HOH 39 240 39 HOH HOH A . D 4 HOH 40 241 40 HOH HOH A . D 4 HOH 41 242 41 HOH HOH A . D 4 HOH 42 243 42 HOH HOH A . D 4 HOH 43 244 43 HOH HOH A . D 4 HOH 44 245 44 HOH HOH A . D 4 HOH 45 246 45 HOH HOH A . D 4 HOH 46 247 46 HOH HOH A . D 4 HOH 47 248 47 HOH HOH A . D 4 HOH 48 249 48 HOH HOH A . D 4 HOH 49 250 49 HOH HOH A . D 4 HOH 50 251 50 HOH HOH A . D 4 HOH 51 252 51 HOH HOH A . D 4 HOH 52 253 52 HOH HOH A . D 4 HOH 53 254 53 HOH HOH A . D 4 HOH 54 255 54 HOH HOH A . D 4 HOH 55 256 55 HOH HOH A . D 4 HOH 56 257 56 HOH HOH A . D 4 HOH 57 258 57 HOH HOH A . D 4 HOH 58 259 58 HOH HOH A . D 4 HOH 59 260 59 HOH HOH A . D 4 HOH 60 261 60 HOH HOH A . D 4 HOH 61 262 61 HOH HOH A . D 4 HOH 62 263 62 HOH HOH A . D 4 HOH 63 264 63 HOH HOH A . D 4 HOH 64 265 64 HOH HOH A . D 4 HOH 65 266 65 HOH HOH A . D 4 HOH 66 267 66 HOH HOH A . D 4 HOH 67 268 67 HOH HOH A . D 4 HOH 68 269 68 HOH HOH A . D 4 HOH 69 270 69 HOH HOH A . D 4 HOH 70 271 70 HOH HOH A . D 4 HOH 71 272 71 HOH HOH A . D 4 HOH 72 273 72 HOH HOH A . D 4 HOH 73 274 73 HOH HOH A . D 4 HOH 74 275 74 HOH HOH A . D 4 HOH 75 276 75 HOH HOH A . D 4 HOH 76 277 76 HOH HOH A . D 4 HOH 77 278 77 HOH HOH A . D 4 HOH 78 279 78 HOH HOH A . D 4 HOH 79 280 79 HOH HOH A . D 4 HOH 80 281 80 HOH HOH A . D 4 HOH 81 282 81 HOH HOH A . D 4 HOH 82 283 82 HOH HOH A . D 4 HOH 83 284 83 HOH HOH A . D 4 HOH 84 285 84 HOH HOH A . D 4 HOH 85 286 85 HOH HOH A . D 4 HOH 86 287 86 HOH HOH A . D 4 HOH 87 288 87 HOH HOH A . D 4 HOH 88 289 89 HOH HOH A . D 4 HOH 89 290 90 HOH HOH A . D 4 HOH 90 291 91 HOH HOH A . D 4 HOH 91 292 92 HOH HOH A . D 4 HOH 92 293 93 HOH HOH A . D 4 HOH 93 294 94 HOH HOH A . D 4 HOH 94 295 95 HOH HOH A . D 4 HOH 95 296 96 HOH HOH A . D 4 HOH 96 297 97 HOH HOH A . D 4 HOH 97 298 98 HOH HOH A . D 4 HOH 98 299 99 HOH HOH A . D 4 HOH 99 300 100 HOH HOH A . D 4 HOH 100 301 101 HOH HOH A . D 4 HOH 101 302 102 HOH HOH A . D 4 HOH 102 303 103 HOH HOH A . D 4 HOH 103 304 104 HOH HOH A . D 4 HOH 104 305 105 HOH HOH A . E 4 HOH 1 88 88 HOH HOH B . #