HEADER RNA 14-AUG-02 1MFY TITLE SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: C4 PROMOTER OF INFLUNEZA A VIRUS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN INFLUENZA A VIRUS. KEYWDS INFLUENZA A VIRUS PROMOTER, INTERNAL LOOP, SINGLE ADENINE BULGE, C4, KEYWDS 2 NATURAL VARIANT, RNA EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR M.-K.LEE,S.-H.BAE,C.-J.PARK,H.-K.CHEONG,C.CHEONG,B.-S.CHOI REVDAT 4 23-FEB-22 1MFY 1 REMARK REVDAT 3 24-FEB-09 1MFY 1 VERSN REVDAT 2 22-JUN-04 1MFY 1 JRNL REVDAT 1 18-SEP-02 1MFY 0 JRNL AUTH M.-K.LEE,S.-H.BAE,C.-J.PARK,H.-K.CHEONG,C.CHEONG,B.-S.CHOI JRNL TITL A SINGLE-NUCLEOTIDE NATURAL VARIATION (U4 TO C4) IN AN JRNL TITL 2 INFLUENZA A VIRUS PROMOTER EXHIBITS A LARGE STRUCTURAL JRNL TITL 3 CHANGE: IMPLICATIONS FOR DIFFERENTIAL VIRAL RNA SYNTHESIS BY JRNL TITL 4 RNA-DEPENDENT RNA POLYMERASE. JRNL REF NUCLEIC ACIDS RES. V. 31 1216 2003 JRNL REFN ISSN 0305-1048 JRNL PMID 12582241 JRNL DOI 10.1093/NAR/GKG214 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, CNS 1.0 REMARK 3 AUTHORS : BRUNGER ET AL (CNS), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 726 RESTRAINTS, 445 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 196 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 58 HYDROGEN BONDING RESTRAINTS. REMARK 4 REMARK 4 1MFY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016883. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : UNLABELED RNA, 1MM; UNLABELED REMARK 210 RNA, 1MM; UNIFORM LABELING WITH REMARK 210 13C,15N; UNIFORM LABELING WITH REMARK 210 13C,15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M82 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A REMARK 900 VIRUS DBREF 1MFY A 1 31 PDB 1MFY 1MFY 1 31 SEQRES 1 A 31 A G U A G A A A C A A G G SEQRES 2 A 31 C U U C G G C C U G C U U SEQRES 3 A 31 U C G C U CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1