data_1MHD # _entry.id 1MHD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1MHD RCSB PD0243 WWPDB D_1000175000 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MHD _pdbx_database_status.recvd_initial_deposition_date 1998-08-18 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # _audit_author.name 'Shi, Y.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 94 _citation.page_first 585 _citation.page_last 594 _citation.year 1998 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9741623 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(00)81600-1' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shi, Y.' 1 primary 'Wang, Y.F.' 2 primary 'Jayaraman, L.' 3 primary 'Yang, H.' 4 primary 'Massague, J.' 5 primary 'Pavletich, N.P.' 6 # _cell.entry_id 1MHD _cell.length_a 45.600 _cell.length_b 60.400 _cell.length_c 71.600 _cell.angle_alpha 90.00 _cell.angle_beta 102.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MHD _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 3959.612 1 ? ? ? ? 2 polymer syn DNA 4294.814 1 ? ? ? ? 3 polymer man SMAD3 15539.169 2 ? ? 'MH1 DOMAIN, RESIDUES 1 - 144' ? 4 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'SMAD N-DOMAIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC)(DA)(DT)(DA)' CAGTCTAGACATA C ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC)(DT)(DG)(DA)' TATGTCTAGACTGA D ? 3 'polypeptide(L)' no no ;MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHR KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVET ; ;MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHR KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVET ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DG n 1 4 DT n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DA n 2 1 DT n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DT n 2 13 DG n 2 14 DA n 3 1 MET n 3 2 SER n 3 3 SER n 3 4 ILE n 3 5 LEU n 3 6 PRO n 3 7 PHE n 3 8 THR n 3 9 PRO n 3 10 PRO n 3 11 ILE n 3 12 VAL n 3 13 LYS n 3 14 ARG n 3 15 LEU n 3 16 LEU n 3 17 GLY n 3 18 TRP n 3 19 LYS n 3 20 LYS n 3 21 GLY n 3 22 GLU n 3 23 GLN n 3 24 ASN n 3 25 GLY n 3 26 GLN n 3 27 GLU n 3 28 GLU n 3 29 LYS n 3 30 TRP n 3 31 CYS n 3 32 GLU n 3 33 LYS n 3 34 ALA n 3 35 VAL n 3 36 LYS n 3 37 SER n 3 38 LEU n 3 39 VAL n 3 40 LYS n 3 41 LYS n 3 42 LEU n 3 43 LYS n 3 44 LYS n 3 45 THR n 3 46 GLY n 3 47 GLN n 3 48 LEU n 3 49 ASP n 3 50 GLU n 3 51 LEU n 3 52 GLU n 3 53 LYS n 3 54 ALA n 3 55 ILE n 3 56 THR n 3 57 THR n 3 58 GLN n 3 59 ASN n 3 60 VAL n 3 61 ASN n 3 62 THR n 3 63 LYS n 3 64 CYS n 3 65 ILE n 3 66 THR n 3 67 ILE n 3 68 PRO n 3 69 ARG n 3 70 SER n 3 71 LEU n 3 72 ASP n 3 73 GLY n 3 74 ARG n 3 75 LEU n 3 76 GLN n 3 77 VAL n 3 78 SER n 3 79 HIS n 3 80 ARG n 3 81 LYS n 3 82 GLY n 3 83 LEU n 3 84 PRO n 3 85 HIS n 3 86 VAL n 3 87 ILE n 3 88 TYR n 3 89 CYS n 3 90 ARG n 3 91 LEU n 3 92 TRP n 3 93 ARG n 3 94 TRP n 3 95 PRO n 3 96 ASP n 3 97 LEU n 3 98 HIS n 3 99 SER n 3 100 HIS n 3 101 HIS n 3 102 GLU n 3 103 LEU n 3 104 ARG n 3 105 ALA n 3 106 MET n 3 107 GLU n 3 108 LEU n 3 109 CYS n 3 110 GLU n 3 111 PHE n 3 112 ALA n 3 113 PHE n 3 114 ASN n 3 115 MET n 3 116 LYS n 3 117 LYS n 3 118 ASP n 3 119 GLU n 3 120 VAL n 3 121 CYS n 3 122 VAL n 3 123 ASN n 3 124 PRO n 3 125 TYR n 3 126 HIS n 3 127 TYR n 3 128 GLN n 3 129 ARG n 3 130 VAL n 3 131 GLU n 3 132 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SMAD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PGEX-2T _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP SMAD3_HUMAN 3 P84022 1 ;MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHR KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRHTEIPAEFPPLDDYSHSI PENTNFPAGIEPQSNIPETPPPGYLSEDGETSDHQMNHSMDAGSPNLSPNPMSPAHNNLDLQPVTYCEPAFWCSISYYEL NQRVGETFHASQPSMTVDGFTDPSNSERLCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNC NQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL NGPLQWLDKVLTQMGSPSIRCSSVS ; ? 2 PDB 1MHD 1 1MHD ? ? ? 3 PDB 1MHD 2 1MHD ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MHD A 1 ? 132 ? P84022 1 ? 132 ? 1 132 2 1 1MHD B 1 ? 132 ? P84022 1 ? 132 ? 1 132 3 2 1MHD C 1 ? 13 ? 1MHD 1001 ? 1013 ? 1001 1013 4 3 1MHD D 1 ? 14 ? 1MHD 2001 ? 2014 ? 2001 2014 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1MHD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 36 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5.6' # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1998-05-05 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MHD _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 9228 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.053 _reflns.pdbx_netI_over_sigmaI 33 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.162 _reflns_shell.meanI_over_sigI_obs 9 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MHD _refine.ls_number_reflns_obs 8490 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 93.6 _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 402 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'R FACTOR' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2042 _refine_hist.pdbx_number_atoms_nucleic_acid 548 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 2614 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.734 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.8 _refine_ls_shell.d_res_low 2.92 _refine_ls_shell.number_reflns_R_work 870 _refine_ls_shell.R_factor_R_work 0.34 _refine_ls_shell.percent_reflns_obs 81.3 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1MHD _struct.title 'CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA' _struct.pdbx_descriptor 'SMAD3/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MHD _struct_keywords.pdbx_keywords 'COMPLEX (TRANSCRIPTION ACTIVATOR/DNA)' _struct_keywords.text 'COMPLEX (TRANSCRIPTION ACTIVATOR-DNA), SMAD3 MH1, SMAD BINDING ELEMENT, DNA, COMPLEX (TRANSCRIPTION ACTIVATOR-DNA) complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE C 11 ? GLY C 17 ? ILE A 11 GLY A 17 1 ? 7 HELX_P HELX_P2 2 GLN C 26 ? THR C 45 ? GLN A 26 THR A 45 1 ? 20 HELX_P HELX_P3 3 LEU C 48 ? THR C 57 ? LEU A 48 THR A 57 1 ? 10 HELX_P HELX_P4 4 PRO C 84 ? TRP C 92 ? PRO A 84 TRP A 92 1 ? 9 HELX_P HELX_P5 5 PRO C 124 ? HIS C 126 ? PRO A 124 HIS A 126 5 ? 3 HELX_P HELX_P6 6 ILE D 11 ? GLY D 17 ? ILE B 11 GLY B 17 1 ? 7 HELX_P HELX_P7 7 GLN D 26 ? THR D 45 ? GLN B 26 THR B 45 1 ? 20 HELX_P HELX_P8 8 LEU D 48 ? THR D 57 ? LEU B 48 THR B 57 1 ? 10 HELX_P HELX_P9 9 PRO D 84 ? TRP D 92 ? PRO B 84 TRP B 92 1 ? 9 HELX_P HELX_P10 10 PRO D 124 ? HIS D 126 ? PRO B 124 HIS B 126 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? C CYS 64 SG ? ? ? 1_555 C CYS 109 SG ? ? A CYS 64 A CYS 109 1_555 ? ? ? ? ? ? ? 2.206 ? disulf2 disulf ? ? D CYS 109 SG ? ? ? 1_555 D CYS 121 SG ? ? B CYS 109 B CYS 121 1_555 ? ? ? ? ? ? ? 2.492 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? C DC 1001 D DG 2013 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? C DC 1001 D DG 2013 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? C DC 1001 D DG 2013 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 12 N3 ? ? C DA 1002 D DT 2012 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 12 O4 ? ? C DA 1002 D DT 2012 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 11 N3 ? ? C DG 1003 D DC 2011 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 11 O2 ? ? C DG 1003 D DC 2011 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 11 N4 ? ? C DG 1003 D DC 2011 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 1004 D DA 2010 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 1004 D DA 2010 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 9 N1 ? ? C DC 1005 D DG 2009 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 1005 D DG 2009 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 9 N2 ? ? C DC 1005 D DG 2009 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 1006 D DA 2008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 1006 D DA 2008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 1007 D DT 2007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 1007 D DT 2007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 6 N3 ? ? C DG 1008 D DC 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 6 O2 ? ? C DG 1008 D DC 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 1008 D DC 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 5 N3 ? ? C DA 1009 D DT 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 5 O4 ? ? C DA 1009 D DT 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 4 N1 ? ? C DC 1010 D DG 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? C DC 1010 D DG 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 4 N2 ? ? C DC 1010 D DG 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 1011 D DT 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 1011 D DT 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 2 N1 ? ? C DT 1012 D DA 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 2 N6 ? ? C DT 1012 D DA 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 1 N3 ? ? C DA 1013 D DT 2001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? C DA 1013 D DT 2001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR C 66 ? PRO C 68 ? THR A 66 PRO A 68 A 2 GLU C 119 ? CYS C 121 ? GLU A 119 CYS A 121 B 1 ARG C 74 ? VAL C 77 ? ARG A 74 VAL A 77 B 2 ARG C 80 ? LEU C 83 ? ARG A 80 LEU A 83 C 1 LEU C 103 ? ALA C 105 ? LEU A 103 ALA A 105 C 2 TYR C 127 ? ARG C 129 ? TYR A 127 ARG A 129 D 1 THR D 66 ? PRO D 68 ? THR B 66 PRO B 68 D 2 GLU D 119 ? CYS D 121 ? GLU B 119 CYS B 121 E 1 ARG D 74 ? VAL D 77 ? ARG B 74 VAL B 77 E 2 ARG D 80 ? LEU D 83 ? ARG B 80 LEU B 83 F 1 LEU D 103 ? ALA D 105 ? LEU B 103 ALA B 105 F 2 TYR D 127 ? ARG D 129 ? TYR B 127 ARG B 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE C 67 ? O ILE A 67 N VAL C 120 ? N VAL A 120 B 1 2 O LEU C 75 ? O LEU A 75 N GLY C 82 ? N GLY A 82 C 1 2 O ARG C 104 ? O ARG A 104 N GLN C 128 ? N GLN A 128 D 1 2 O ILE D 67 ? O ILE B 67 N VAL D 120 ? N VAL B 120 E 1 2 O LEU D 75 ? O LEU B 75 N GLY D 82 ? N GLY B 82 F 1 2 O ARG D 104 ? O ARG B 104 N GLN D 128 ? N GLN B 128 # _database_PDB_matrix.entry_id 1MHD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MHD _atom_sites.fract_transf_matrix[1][1] 0.021930 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004661 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016556 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014279 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1001 1001 DC C C . n A 1 2 DA 2 1002 1002 DA A C . n A 1 3 DG 3 1003 1003 DG G C . n A 1 4 DT 4 1004 1004 DT T C . n A 1 5 DC 5 1005 1005 DC C C . n A 1 6 DT 6 1006 1006 DT T C . n A 1 7 DA 7 1007 1007 DA A C . n A 1 8 DG 8 1008 1008 DG G C . n A 1 9 DA 9 1009 1009 DA A C . n A 1 10 DC 10 1010 1010 DC C C . n A 1 11 DA 11 1011 1011 DA A C . n A 1 12 DT 12 1012 1012 DT T C . n A 1 13 DA 13 1013 1013 DA A C . n B 2 1 DT 1 2001 2001 DT T D . n B 2 2 DA 2 2002 2002 DA A D . n B 2 3 DT 3 2003 2003 DT T D . n B 2 4 DG 4 2004 2004 DG G D . n B 2 5 DT 5 2005 2005 DT T D . n B 2 6 DC 6 2006 2006 DC C D . n B 2 7 DT 7 2007 2007 DT T D . n B 2 8 DA 8 2008 2008 DA A D . n B 2 9 DG 9 2009 2009 DG G D . n B 2 10 DA 10 2010 2010 DA A D . n B 2 11 DC 11 2011 2011 DC C D . n B 2 12 DT 12 2012 2012 DT T D . n B 2 13 DG 13 2013 2013 DG G D . n B 2 14 DA 14 2014 2014 DA A D . n C 3 1 MET 1 1 ? ? ? A . n C 3 2 SER 2 2 ? ? ? A . n C 3 3 SER 3 3 ? ? ? A . n C 3 4 ILE 4 4 ? ? ? A . n C 3 5 LEU 5 5 ? ? ? A . n C 3 6 PRO 6 6 ? ? ? A . n C 3 7 PHE 7 7 ? ? ? A . n C 3 8 THR 8 8 ? ? ? A . n C 3 9 PRO 9 9 ? ? ? A . n C 3 10 PRO 10 10 10 PRO PRO A . n C 3 11 ILE 11 11 11 ILE ILE A . n C 3 12 VAL 12 12 12 VAL VAL A . n C 3 13 LYS 13 13 13 LYS LYS A . n C 3 14 ARG 14 14 14 ARG ARG A . n C 3 15 LEU 15 15 15 LEU LEU A . n C 3 16 LEU 16 16 16 LEU LEU A . n C 3 17 GLY 17 17 17 GLY GLY A . n C 3 18 TRP 18 18 18 TRP TRP A . n C 3 19 LYS 19 19 19 LYS LYS A . n C 3 20 LYS 20 20 20 LYS LYS A . n C 3 21 GLY 21 21 21 GLY GLY A . n C 3 22 GLU 22 22 22 GLU GLU A . n C 3 23 GLN 23 23 23 GLN GLN A . n C 3 24 ASN 24 24 24 ASN ASN A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 GLN 26 26 26 GLN GLN A . n C 3 27 GLU 27 27 27 GLU GLU A . n C 3 28 GLU 28 28 28 GLU GLU A . n C 3 29 LYS 29 29 29 LYS LYS A . n C 3 30 TRP 30 30 30 TRP TRP A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 GLU 32 32 32 GLU GLU A . n C 3 33 LYS 33 33 33 LYS LYS A . n C 3 34 ALA 34 34 34 ALA ALA A . n C 3 35 VAL 35 35 35 VAL VAL A . n C 3 36 LYS 36 36 36 LYS LYS A . n C 3 37 SER 37 37 37 SER SER A . n C 3 38 LEU 38 38 38 LEU LEU A . n C 3 39 VAL 39 39 39 VAL VAL A . n C 3 40 LYS 40 40 40 LYS LYS A . n C 3 41 LYS 41 41 41 LYS LYS A . n C 3 42 LEU 42 42 42 LEU LEU A . n C 3 43 LYS 43 43 43 LYS LYS A . n C 3 44 LYS 44 44 44 LYS LYS A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 GLY 46 46 46 GLY GLY A . n C 3 47 GLN 47 47 47 GLN GLN A . n C 3 48 LEU 48 48 48 LEU LEU A . n C 3 49 ASP 49 49 49 ASP ASP A . n C 3 50 GLU 50 50 50 GLU GLU A . n C 3 51 LEU 51 51 51 LEU LEU A . n C 3 52 GLU 52 52 52 GLU GLU A . n C 3 53 LYS 53 53 53 LYS LYS A . n C 3 54 ALA 54 54 54 ALA ALA A . n C 3 55 ILE 55 55 55 ILE ILE A . n C 3 56 THR 56 56 56 THR THR A . n C 3 57 THR 57 57 57 THR THR A . n C 3 58 GLN 58 58 58 GLN GLN A . n C 3 59 ASN 59 59 59 ASN ASN A . n C 3 60 VAL 60 60 60 VAL VAL A . n C 3 61 ASN 61 61 61 ASN ASN A . n C 3 62 THR 62 62 62 THR THR A . n C 3 63 LYS 63 63 63 LYS LYS A . n C 3 64 CYS 64 64 64 CYS CYS A . n C 3 65 ILE 65 65 65 ILE ILE A . n C 3 66 THR 66 66 66 THR THR A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 PRO 68 68 68 PRO PRO A . n C 3 69 ARG 69 69 69 ARG ARG A . n C 3 70 SER 70 70 70 SER SER A . n C 3 71 LEU 71 71 71 LEU LEU A . n C 3 72 ASP 72 72 72 ASP ASP A . n C 3 73 GLY 73 73 73 GLY GLY A . n C 3 74 ARG 74 74 74 ARG ARG A . n C 3 75 LEU 75 75 75 LEU LEU A . n C 3 76 GLN 76 76 76 GLN GLN A . n C 3 77 VAL 77 77 77 VAL VAL A . n C 3 78 SER 78 78 78 SER SER A . n C 3 79 HIS 79 79 79 HIS HIS A . n C 3 80 ARG 80 80 80 ARG ARG A . n C 3 81 LYS 81 81 81 LYS LYS A . n C 3 82 GLY 82 82 82 GLY GLY A . n C 3 83 LEU 83 83 83 LEU LEU A . n C 3 84 PRO 84 84 84 PRO PRO A . n C 3 85 HIS 85 85 85 HIS HIS A . n C 3 86 VAL 86 86 86 VAL VAL A . n C 3 87 ILE 87 87 87 ILE ILE A . n C 3 88 TYR 88 88 88 TYR TYR A . n C 3 89 CYS 89 89 89 CYS CYS A . n C 3 90 ARG 90 90 90 ARG ARG A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 TRP 92 92 92 TRP TRP A . n C 3 93 ARG 93 93 93 ARG ARG A . n C 3 94 TRP 94 94 94 TRP TRP A . n C 3 95 PRO 95 95 95 PRO PRO A . n C 3 96 ASP 96 96 96 ASP ASP A . n C 3 97 LEU 97 97 97 LEU LEU A . n C 3 98 HIS 98 98 98 HIS HIS A . n C 3 99 SER 99 99 99 SER SER A . n C 3 100 HIS 100 100 100 HIS HIS A . n C 3 101 HIS 101 101 101 HIS HIS A . n C 3 102 GLU 102 102 102 GLU GLU A . n C 3 103 LEU 103 103 103 LEU LEU A . n C 3 104 ARG 104 104 104 ARG ARG A . n C 3 105 ALA 105 105 105 ALA ALA A . n C 3 106 MET 106 106 106 MET MET A . n C 3 107 GLU 107 107 107 GLU GLU A . n C 3 108 LEU 108 108 108 LEU LEU A . n C 3 109 CYS 109 109 109 CYS CYS A . n C 3 110 GLU 110 110 110 GLU GLU A . n C 3 111 PHE 111 111 111 PHE PHE A . n C 3 112 ALA 112 112 112 ALA ALA A . n C 3 113 PHE 113 113 113 PHE PHE A . n C 3 114 ASN 114 114 114 ASN ASN A . n C 3 115 MET 115 115 115 MET MET A . n C 3 116 LYS 116 116 116 LYS LYS A . n C 3 117 LYS 117 117 117 LYS LYS A . n C 3 118 ASP 118 118 118 ASP ASP A . n C 3 119 GLU 119 119 119 GLU GLU A . n C 3 120 VAL 120 120 120 VAL VAL A . n C 3 121 CYS 121 121 121 CYS CYS A . n C 3 122 VAL 122 122 122 VAL VAL A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 PRO 124 124 124 PRO PRO A . n C 3 125 TYR 125 125 125 TYR TYR A . n C 3 126 HIS 126 126 126 HIS HIS A . n C 3 127 TYR 127 127 127 TYR TYR A . n C 3 128 GLN 128 128 128 GLN GLN A . n C 3 129 ARG 129 129 129 ARG ARG A . n C 3 130 VAL 130 130 130 VAL VAL A . n C 3 131 GLU 131 131 131 GLU GLU A . n C 3 132 THR 132 132 132 THR THR A . n D 3 1 MET 1 1 ? ? ? B . n D 3 2 SER 2 2 ? ? ? B . n D 3 3 SER 3 3 ? ? ? B . n D 3 4 ILE 4 4 ? ? ? B . n D 3 5 LEU 5 5 ? ? ? B . n D 3 6 PRO 6 6 ? ? ? B . n D 3 7 PHE 7 7 ? ? ? B . n D 3 8 THR 8 8 ? ? ? B . n D 3 9 PRO 9 9 ? ? ? B . n D 3 10 PRO 10 10 10 PRO PRO B . n D 3 11 ILE 11 11 11 ILE ILE B . n D 3 12 VAL 12 12 12 VAL VAL B . n D 3 13 LYS 13 13 13 LYS LYS B . n D 3 14 ARG 14 14 14 ARG ARG B . n D 3 15 LEU 15 15 15 LEU LEU B . n D 3 16 LEU 16 16 16 LEU LEU B . n D 3 17 GLY 17 17 17 GLY GLY B . n D 3 18 TRP 18 18 18 TRP TRP B . n D 3 19 LYS 19 19 19 LYS LYS B . n D 3 20 LYS 20 20 20 LYS LYS B . n D 3 21 GLY 21 21 21 GLY GLY B . n D 3 22 GLU 22 22 22 GLU GLU B . n D 3 23 GLN 23 23 23 GLN GLN B . n D 3 24 ASN 24 24 24 ASN ASN B . n D 3 25 GLY 25 25 25 GLY GLY B . n D 3 26 GLN 26 26 26 GLN GLN B . n D 3 27 GLU 27 27 27 GLU GLU B . n D 3 28 GLU 28 28 28 GLU GLU B . n D 3 29 LYS 29 29 29 LYS LYS B . n D 3 30 TRP 30 30 30 TRP TRP B . n D 3 31 CYS 31 31 31 CYS CYS B . n D 3 32 GLU 32 32 32 GLU GLU B . n D 3 33 LYS 33 33 33 LYS LYS B . n D 3 34 ALA 34 34 34 ALA ALA B . n D 3 35 VAL 35 35 35 VAL VAL B . n D 3 36 LYS 36 36 36 LYS LYS B . n D 3 37 SER 37 37 37 SER SER B . n D 3 38 LEU 38 38 38 LEU LEU B . n D 3 39 VAL 39 39 39 VAL VAL B . n D 3 40 LYS 40 40 40 LYS LYS B . n D 3 41 LYS 41 41 41 LYS LYS B . n D 3 42 LEU 42 42 42 LEU LEU B . n D 3 43 LYS 43 43 43 LYS LYS B . n D 3 44 LYS 44 44 44 LYS LYS B . n D 3 45 THR 45 45 45 THR THR B . n D 3 46 GLY 46 46 46 GLY GLY B . n D 3 47 GLN 47 47 47 GLN GLN B . n D 3 48 LEU 48 48 48 LEU LEU B . n D 3 49 ASP 49 49 49 ASP ASP B . n D 3 50 GLU 50 50 50 GLU GLU B . n D 3 51 LEU 51 51 51 LEU LEU B . n D 3 52 GLU 52 52 52 GLU GLU B . n D 3 53 LYS 53 53 53 LYS LYS B . n D 3 54 ALA 54 54 54 ALA ALA B . n D 3 55 ILE 55 55 55 ILE ILE B . n D 3 56 THR 56 56 56 THR THR B . n D 3 57 THR 57 57 57 THR THR B . n D 3 58 GLN 58 58 58 GLN GLN B . n D 3 59 ASN 59 59 59 ASN ASN B . n D 3 60 VAL 60 60 60 VAL VAL B . n D 3 61 ASN 61 61 61 ASN ASN B . n D 3 62 THR 62 62 62 THR THR B . n D 3 63 LYS 63 63 63 LYS LYS B . n D 3 64 CYS 64 64 64 CYS CYS B . n D 3 65 ILE 65 65 65 ILE ILE B . n D 3 66 THR 66 66 66 THR THR B . n D 3 67 ILE 67 67 67 ILE ILE B . n D 3 68 PRO 68 68 68 PRO PRO B . n D 3 69 ARG 69 69 69 ARG ARG B . n D 3 70 SER 70 70 70 SER SER B . n D 3 71 LEU 71 71 71 LEU LEU B . n D 3 72 ASP 72 72 72 ASP ASP B . n D 3 73 GLY 73 73 73 GLY GLY B . n D 3 74 ARG 74 74 74 ARG ARG B . n D 3 75 LEU 75 75 75 LEU LEU B . n D 3 76 GLN 76 76 76 GLN GLN B . n D 3 77 VAL 77 77 77 VAL VAL B . n D 3 78 SER 78 78 78 SER SER B . n D 3 79 HIS 79 79 79 HIS HIS B . n D 3 80 ARG 80 80 80 ARG ARG B . n D 3 81 LYS 81 81 81 LYS LYS B . n D 3 82 GLY 82 82 82 GLY GLY B . n D 3 83 LEU 83 83 83 LEU LEU B . n D 3 84 PRO 84 84 84 PRO PRO B . n D 3 85 HIS 85 85 85 HIS HIS B . n D 3 86 VAL 86 86 86 VAL VAL B . n D 3 87 ILE 87 87 87 ILE ILE B . n D 3 88 TYR 88 88 88 TYR TYR B . n D 3 89 CYS 89 89 89 CYS CYS B . n D 3 90 ARG 90 90 90 ARG ARG B . n D 3 91 LEU 91 91 91 LEU LEU B . n D 3 92 TRP 92 92 92 TRP TRP B . n D 3 93 ARG 93 93 93 ARG ARG B . n D 3 94 TRP 94 94 94 TRP TRP B . n D 3 95 PRO 95 95 95 PRO PRO B . n D 3 96 ASP 96 96 96 ASP ASP B . n D 3 97 LEU 97 97 97 LEU LEU B . n D 3 98 HIS 98 98 98 HIS HIS B . n D 3 99 SER 99 99 99 SER SER B . n D 3 100 HIS 100 100 100 HIS HIS B . n D 3 101 HIS 101 101 101 HIS HIS B . n D 3 102 GLU 102 102 102 GLU GLU B . n D 3 103 LEU 103 103 103 LEU LEU B . n D 3 104 ARG 104 104 104 ARG ARG B . n D 3 105 ALA 105 105 105 ALA ALA B . n D 3 106 MET 106 106 106 MET MET B . n D 3 107 GLU 107 107 107 GLU GLU B . n D 3 108 LEU 108 108 108 LEU LEU B . n D 3 109 CYS 109 109 109 CYS CYS B . n D 3 110 GLU 110 110 110 GLU GLU B . n D 3 111 PHE 111 111 111 PHE PHE B . n D 3 112 ALA 112 112 112 ALA ALA B . n D 3 113 PHE 113 113 113 PHE PHE B . n D 3 114 ASN 114 114 114 ASN ASN B . n D 3 115 MET 115 115 115 MET MET B . n D 3 116 LYS 116 116 116 LYS LYS B . n D 3 117 LYS 117 117 117 LYS LYS B . n D 3 118 ASP 118 118 118 ASP ASP B . n D 3 119 GLU 119 119 119 GLU GLU B . n D 3 120 VAL 120 120 120 VAL VAL B . n D 3 121 CYS 121 121 121 CYS CYS B . n D 3 122 VAL 122 122 122 VAL VAL B . n D 3 123 ASN 123 123 123 ASN ASN B . n D 3 124 PRO 124 124 124 PRO PRO B . n D 3 125 TYR 125 125 125 TYR TYR B . n D 3 126 HIS 126 126 126 HIS HIS B . n D 3 127 TYR 127 127 127 TYR TYR B . n D 3 128 GLN 128 128 128 GLN GLN B . n D 3 129 ARG 129 129 129 ARG ARG B . n D 3 130 VAL 130 130 130 VAL VAL B . n D 3 131 GLU 131 131 131 GLU GLU B . n D 3 132 THR 132 132 132 THR THR B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-18 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' 3.1 ? 3 X-PLOR refinement 3.1 ? 4 X-PLOR phasing 3.1 ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N A ARG 80 ? ? CA A ARG 80 ? ? 1.634 1.459 0.175 0.020 N 2 1 N A ASN 114 ? ? CA A ASN 114 ? ? 1.639 1.459 0.180 0.020 N 3 1 C B SER 78 ? ? N B HIS 79 ? ? 1.189 1.336 -0.147 0.023 Y 4 1 N B ASN 114 ? ? CA B ASN 114 ? ? 1.617 1.459 0.158 0.020 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DA 1011 ? ? "C1'" C DA 1011 ? ? N9 C DA 1011 ? ? 111.10 108.30 2.80 0.30 N 2 1 "O4'" D DA 2014 ? ? "C1'" D DA 2014 ? ? N9 D DA 2014 ? ? 110.31 108.30 2.01 0.30 N 3 1 N A ARG 80 ? ? CA A ARG 80 ? ? CB A ARG 80 ? ? 124.78 110.60 14.18 1.80 N 4 1 N A ARG 80 ? ? CA A ARG 80 ? ? C A ARG 80 ? ? 79.47 111.00 -31.53 2.70 N 5 1 N A ASN 114 ? ? CA A ASN 114 ? ? C A ASN 114 ? ? 88.78 111.00 -22.22 2.70 N 6 1 N B ARG 80 ? ? CA B ARG 80 ? ? C B ARG 80 ? ? 91.52 111.00 -19.48 2.70 N 7 1 CA B LEU 103 ? ? CB B LEU 103 ? ? CG B LEU 103 ? ? 130.88 115.30 15.58 2.30 N 8 1 N B ASN 114 ? ? CA B ASN 114 ? ? C B ASN 114 ? ? 88.36 111.00 -22.64 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 19 ? ? 79.62 75.92 2 1 GLN A 23 ? ? 133.31 135.73 3 1 GLN A 26 ? ? -58.46 -8.78 4 1 SER A 78 ? ? 64.66 -21.16 5 1 HIS A 79 ? ? 154.15 -5.32 6 1 ARG A 93 ? ? -143.02 -75.61 7 1 LEU A 97 ? ? -35.03 112.26 8 1 GLU A 107 ? ? 68.20 -27.43 9 1 PHE A 111 ? ? -101.11 45.71 10 1 ALA A 112 ? ? -75.66 45.15 11 1 PHE A 113 ? ? 62.15 -27.07 12 1 LYS A 116 ? ? 37.95 33.38 13 1 LYS B 19 ? ? 80.76 75.21 14 1 GLN B 23 ? ? 133.07 133.14 15 1 GLN B 26 ? ? -58.95 -7.72 16 1 SER B 78 ? ? 58.48 -23.04 17 1 HIS B 79 ? ? 155.60 -16.09 18 1 ARG B 93 ? ? -145.34 -66.07 19 1 LEU B 97 ? ? -34.70 113.40 20 1 GLU B 107 ? ? 65.19 -27.45 21 1 PHE B 111 ? ? -98.84 42.53 22 1 ALA B 112 ? ? -68.55 38.77 23 1 PHE B 113 ? ? 64.69 -27.79 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 HIS A 79 ? ? ARG A 80 ? ? -135.39 2 1 HIS B 79 ? ? ARG B 80 ? ? -146.13 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG C 1003 ? ? 0.062 'SIDE CHAIN' 2 1 DA C 1011 ? ? 0.069 'SIDE CHAIN' 3 1 DT C 1012 ? ? 0.072 'SIDE CHAIN' 4 1 DT D 2003 ? ? 0.072 'SIDE CHAIN' 5 1 DG D 2004 ? ? 0.058 'SIDE CHAIN' 6 1 DA D 2008 ? ? 0.058 'SIDE CHAIN' 7 1 TYR A 88 ? ? 0.070 'SIDE CHAIN' 8 1 TYR B 125 ? ? 0.068 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 SER _pdbx_validate_polymer_linkage.auth_seq_id_1 78 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 HIS _pdbx_validate_polymer_linkage.auth_seq_id_2 79 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A SER 2 ? C SER 2 3 1 Y 1 A SER 3 ? C SER 3 4 1 Y 1 A ILE 4 ? C ILE 4 5 1 Y 1 A LEU 5 ? C LEU 5 6 1 Y 1 A PRO 6 ? C PRO 6 7 1 Y 1 A PHE 7 ? C PHE 7 8 1 Y 1 A THR 8 ? C THR 8 9 1 Y 1 A PRO 9 ? C PRO 9 10 1 Y 1 B MET 1 ? D MET 1 11 1 Y 1 B SER 2 ? D SER 2 12 1 Y 1 B SER 3 ? D SER 3 13 1 Y 1 B ILE 4 ? D ILE 4 14 1 Y 1 B LEU 5 ? D LEU 5 15 1 Y 1 B PRO 6 ? D PRO 6 16 1 Y 1 B PHE 7 ? D PHE 7 17 1 Y 1 B THR 8 ? D THR 8 18 1 Y 1 B PRO 9 ? D PRO 9 # _ndb_struct_conf_na.entry_id 1MHD _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.483 -0.733 0.107 -7.810 -6.873 -10.707 1 C_DC1001:DG2013_D C 1001 ? D 2013 ? 19 1 1 A DA 2 1_555 B DT 12 1_555 0.305 -0.039 0.123 14.283 -7.487 -0.797 2 C_DA1002:DT2012_D C 1002 ? D 2012 ? 20 1 1 A DG 3 1_555 B DC 11 1_555 0.123 0.065 -0.042 0.515 -12.944 -2.484 3 C_DG1003:DC2011_D C 1003 ? D 2011 ? 19 1 1 A DT 4 1_555 B DA 10 1_555 -0.380 -0.548 0.003 -4.182 -18.270 -6.549 4 C_DT1004:DA2010_D C 1004 ? D 2010 ? 20 1 1 A DC 5 1_555 B DG 9 1_555 -0.087 -0.429 0.252 -6.518 -11.479 -7.938 5 C_DC1005:DG2009_D C 1005 ? D 2009 ? 19 1 1 A DT 6 1_555 B DA 8 1_555 0.422 0.123 -0.110 -6.150 -14.900 -1.476 6 C_DT1006:DA2008_D C 1006 ? D 2008 ? 20 1 1 A DA 7 1_555 B DT 7 1_555 -0.097 -0.096 -0.280 6.344 -19.309 -7.014 7 C_DA1007:DT2007_D C 1007 ? D 2007 ? 20 1 1 A DG 8 1_555 B DC 6 1_555 0.224 -0.189 0.132 2.333 -7.955 -5.788 8 C_DG1008:DC2006_D C 1008 ? D 2006 ? 19 1 1 A DA 9 1_555 B DT 5 1_555 -0.072 -0.485 -0.343 -3.583 -15.610 -2.507 9 C_DA1009:DT2005_D C 1009 ? D 2005 ? 20 1 1 A DC 10 1_555 B DG 4 1_555 -0.472 -0.321 0.095 -3.620 -4.641 -3.674 10 C_DC1010:DG2004_D C 1010 ? D 2004 ? 19 1 1 A DA 11 1_555 B DT 3 1_555 -0.426 -0.353 -0.319 -1.093 -0.072 -8.111 11 C_DA1011:DT2003_D C 1011 ? D 2003 ? 20 1 1 A DT 12 1_555 B DA 2 1_555 -0.359 -0.402 -0.068 3.603 -9.674 -3.319 12 C_DT1012:DA2002_D C 1012 ? D 2002 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 1.143 -0.547 -0.615 -9.223 -18.648 7.988 13 C_DA1013:DT2001_D C 1013 ? D 2001 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DA 2 1_555 B DT 12 1_555 0.257 -0.846 2.895 2.320 0.894 19.012 -2.940 0.270 2.863 2.692 -6.984 19.172 1 CC_DC1001DA1002:DT2012DG2013_DD C 1001 ? D 2013 ? C 1002 ? D 2012 ? 1 A DA 2 1_555 B DT 12 1_555 A DG 3 1_555 B DC 11 1_555 -0.342 -0.408 3.669 -1.111 6.261 34.673 -1.709 0.382 3.553 10.397 1.846 35.233 2 CC_DA1002DG1003:DC2011DT2012_DD C 1002 ? D 2012 ? C 1003 ? D 2011 ? 1 A DG 3 1_555 B DC 11 1_555 A DT 4 1_555 B DA 10 1_555 -0.648 -1.040 3.392 1.161 2.410 31.527 -2.363 1.408 3.280 4.425 -2.132 31.638 3 CC_DG1003DT1004:DA2010DC2011_DD C 1003 ? D 2011 ? C 1004 ? D 2010 ? 1 A DT 4 1_555 B DA 10 1_555 A DC 5 1_555 B DG 9 1_555 -0.001 -0.652 3.492 -1.496 6.096 37.183 -1.840 -0.203 3.345 9.477 2.325 37.691 4 CC_DT1004DC1005:DG2009DA2010_DD C 1004 ? D 2010 ? C 1005 ? D 2009 ? 1 A DC 5 1_555 B DG 9 1_555 A DT 6 1_555 B DA 8 1_555 0.146 0.389 3.145 5.712 6.016 31.434 -0.334 0.717 3.141 10.869 -10.319 32.483 5 CC_DC1005DT1006:DA2008DG2009_DD C 1005 ? D 2009 ? C 1006 ? D 2008 ? 1 A DT 6 1_555 B DA 8 1_555 A DA 7 1_555 B DT 7 1_555 -0.238 2.716 3.031 1.466 -8.499 47.511 3.891 0.389 2.530 -10.448 -1.802 48.243 6 CC_DT1006DA1007:DT2007DA2008_DD C 1006 ? D 2008 ? C 1007 ? D 2007 ? 1 A DA 7 1_555 B DT 7 1_555 A DG 8 1_555 B DC 6 1_555 0.240 0.288 3.410 -7.601 9.787 30.818 -1.224 -1.763 3.204 17.552 13.632 33.160 7 CC_DA1007DG1008:DC2006DT2007_DD C 1007 ? D 2007 ? C 1008 ? D 2006 ? 1 A DG 8 1_555 B DC 6 1_555 A DA 9 1_555 B DT 5 1_555 0.152 -0.165 3.500 4.557 -1.615 36.283 -0.024 0.431 3.497 -2.579 -7.278 36.593 8 CC_DG1008DA1009:DT2005DC2006_DD C 1008 ? D 2006 ? C 1009 ? D 2005 ? 1 A DA 9 1_555 B DT 5 1_555 A DC 10 1_555 B DG 4 1_555 0.842 -0.838 3.215 -5.282 12.987 32.055 -3.203 -2.138 2.532 22.238 9.044 34.913 9 CC_DA1009DC1010:DG2004DT2005_DD C 1009 ? D 2005 ? C 1010 ? D 2004 ? 1 A DC 10 1_555 B DG 4 1_555 A DA 11 1_555 B DT 3 1_555 0.321 -0.210 3.241 4.084 4.385 30.590 -1.222 0.177 3.195 8.213 -7.650 31.157 10 CC_DC1010DA1011:DT2003DG2004_DD C 1010 ? D 2004 ? C 1011 ? D 2003 ? 1 A DA 11 1_555 B DT 3 1_555 A DT 12 1_555 B DA 2 1_555 0.250 -0.962 3.413 -0.024 2.744 25.990 -2.894 -0.561 3.295 6.080 0.054 26.132 11 CC_DA1011DT1012:DA2002DT2003_DD C 1011 ? D 2003 ? C 1012 ? D 2002 ? 1 A DT 12 1_555 B DA 2 1_555 A DA 13 1_555 B DT 1 1_555 -0.301 -0.016 3.769 4.457 11.682 38.199 -1.556 1.023 3.559 17.294 -6.598 40.120 12 CC_DT1012DA1013:DT2001DA2002_DD C 1012 ? D 2002 ? C 1013 ? D 2001 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 4 4 HOH HOH C . E 4 HOH 2 5 5 HOH HOH C . E 4 HOH 3 7 7 HOH HOH C . E 4 HOH 4 8 8 HOH HOH C . E 4 HOH 5 24 24 HOH HOH C . F 4 HOH 1 2 2 HOH HOH D . F 4 HOH 2 10 10 HOH HOH D . F 4 HOH 3 12 12 HOH HOH D . F 4 HOH 4 14 14 HOH HOH D . F 4 HOH 5 16 16 HOH HOH D . F 4 HOH 6 19 19 HOH HOH D . G 4 HOH 1 133 1 HOH HOH A . G 4 HOH 2 134 6 HOH HOH A . G 4 HOH 3 135 13 HOH HOH A . G 4 HOH 4 136 15 HOH HOH A . H 4 HOH 1 133 3 HOH HOH B . H 4 HOH 2 134 9 HOH HOH B . H 4 HOH 3 135 11 HOH HOH B . H 4 HOH 4 136 17 HOH HOH B . H 4 HOH 5 137 18 HOH HOH B . H 4 HOH 6 138 20 HOH HOH B . H 4 HOH 7 139 21 HOH HOH B . H 4 HOH 8 140 22 HOH HOH B . H 4 HOH 9 141 23 HOH HOH B . #