data_1MME # _entry.id 1MME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MME pdb_00001mme 10.2210/pdb1mme/pdb RCSB URX035 ? ? WWPDB D_1000175070 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-02-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MME _pdbx_database_status.recvd_initial_deposition_date 1995-12-09 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scott, W.G.' 1 'Finch, J.T.' 2 'Klug, A.' 3 # _citation.id primary _citation.title 'The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 81 _citation.page_first 991 _citation.page_last 1002 _citation.year 1995 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7541315 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(05)80004-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scott, W.G.' 1 ? primary 'Finch, J.T.' 2 ? primary 'Klug, A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA HAMMERHEAD RIBOZYME' 5170.103 2 ? ? ? ? 2 polymer syn 'RNA HAMMERHEAD RIBOZYME' 8019.876 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GUGGUCUGAUGAGGCC GUGGUCUGAUGAGGCC A,C ? 2 polyribonucleotide no no GGCCGAAACUCGUAAGAGUCACCAC GGCCGAAACUCGUAAGAGUCACCAC B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 G n 1 5 U n 1 6 C n 1 7 U n 1 8 G n 1 9 A n 1 10 U n 1 11 G n 1 12 A n 1 13 G n 1 14 G n 1 15 C n 1 16 C n 2 1 G n 2 2 G n 2 3 C n 2 4 C n 2 5 G n 2 6 A n 2 7 A n 2 8 A n 2 9 C n 2 10 U n 2 11 C n 2 12 G n 2 13 U n 2 14 A n 2 15 A n 2 16 G n 2 17 A n 2 18 G n 2 19 U n 2 20 C n 2 21 A n 2 22 C n 2 23 C n 2 24 A n 2 25 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 25 25 G G A . n A 1 2 U 2 24 24 U U A . n A 1 3 G 3 23 23 G G A . n A 1 4 G 4 22 22 G G A . n A 1 5 U 5 21 21 U U A . n A 1 6 C 6 30 30 C C A . n A 1 7 U 7 40 40 U U A . n A 1 8 G 8 50 50 G G A . n A 1 9 A 9 60 60 A A A . n A 1 10 U 10 70 70 U U A . n A 1 11 G 11 80 80 G G A . n A 1 12 A 12 90 90 A A A . n A 1 13 G 13 101 101 G G A . n A 1 14 G 14 102 102 G G A . n A 1 15 C 15 103 103 C C A . n A 1 16 C 16 104 104 C C A . n B 2 1 G 1 114 114 G G B . n B 2 2 G 2 113 113 G G B . n B 2 3 C 3 112 112 C C B . n B 2 4 C 4 111 111 C C B . n B 2 5 G 5 120 120 G G B . n B 2 6 A 6 130 130 A A B . n B 2 7 A 7 140 140 A A B . n B 2 8 A 8 151 151 A A B . n B 2 9 C 9 152 152 C C B . n B 2 10 U 10 153 153 U U B . n B 2 11 C 11 154 154 C C B . n B 2 12 G 12 31 31 G G B L n B 2 13 U 13 32 32 U U B L n B 2 14 A 14 33 33 A A B L n B 2 15 A 15 34 34 A A B L n B 2 16 G 16 164 164 G G B . n B 2 17 A 17 163 163 A A B . n B 2 18 G 18 162 162 G G B . n B 2 19 U 19 161 161 U U B . n B 2 20 C 20 170 170 C C B . n B 2 21 A 21 11 11 A A B . n B 2 22 C 22 12 12 C C B . n B 2 23 C 23 13 13 C C B . n B 2 24 A 24 14 14 A A B . n B 2 25 C 25 15 15 C C B . n C 1 1 G 1 25 25 G G C . n C 1 2 U 2 24 24 U U C . n C 1 3 G 3 23 23 G G C . n C 1 4 G 4 22 22 G G C . n C 1 5 U 5 21 21 U U C . n C 1 6 C 6 30 30 C C C . n C 1 7 U 7 40 40 U U C . n C 1 8 G 8 50 50 G G C . n C 1 9 A 9 60 60 A A C . n C 1 10 U 10 70 70 U U C . n C 1 11 G 11 80 80 G G C . n C 1 12 A 12 90 90 A A C . n C 1 13 G 13 101 101 G G C . n C 1 14 G 14 102 102 G G C . n C 1 15 C 15 103 103 C C C . n C 1 16 C 16 104 104 C C C . n D 2 1 G 1 114 114 G G D . n D 2 2 G 2 113 113 G G D . n D 2 3 C 3 112 112 C C D . n D 2 4 C 4 111 111 C C D . n D 2 5 G 5 120 120 G G D . n D 2 6 A 6 130 130 A A D . n D 2 7 A 7 140 140 A A D . n D 2 8 A 8 151 151 A A D . n D 2 9 C 9 152 152 C C D . n D 2 10 U 10 153 153 U U D . n D 2 11 C 11 154 154 C C D . n D 2 12 G 12 31 31 G G D L n D 2 13 U 13 32 32 U U D L n D 2 14 A 14 33 33 A A D L n D 2 15 A 15 34 34 A A D L n D 2 16 G 16 164 164 G G D . n D 2 17 A 17 163 163 A A D . n D 2 18 G 18 162 162 G G D . n D 2 19 U 19 161 161 U U D . n D 2 20 C 20 170 170 C C D . n D 2 21 A 21 11 11 A A D . n D 2 22 C 22 12 12 C C D . n D 2 23 C 23 13 13 C C D . n D 2 24 A 24 14 14 A A D . n D 2 25 C 25 15 15 C C D . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 IPMOSFLM 'data reduction' . ? 2 # _cell.entry_id 1MME _cell.length_a 64.980 _cell.length_b 64.980 _cell.length_c 138.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MME _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 1MME _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 6000' ? ? ? 1 3 1 GLYCEROL ? ? ? 1 4 1 'NH4 CACODYLATE' ? ? ? 1 5 1 'NH4 ACETATE' ? ? ? 1 6 1 'MG ACETATE' ? ? ? 1 7 1 SPERMINE ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 173.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1994-11-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MME _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 3.100 _reflns.number_obs 6529 _reflns.number_all ? _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.0850000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1MME _refine.ls_number_reflns_obs 6199 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.000 _refine.ls_d_res_high 3.100 _refine.ls_percent_reflns_obs 94.900 _refine.ls_R_factor_obs 0.2510000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2510000 _refine.ls_R_factor_R_free 0.2930000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 35.60 _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MME _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.35 _refine_analyze.Luzzati_d_res_low_obs 0.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1746 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 3.100 _refine_hist.d_res_low 15.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.60 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 16.5 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.80 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1MME _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MME _struct.title 'THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MME _struct_keywords.pdbx_keywords RIBOZYME _struct_keywords.text 'RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP, RIBOZYME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1MME 1MME ? ? ? 2 2 PDB 1MME 1MME ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MME A 1 ? 16 ? 1MME 25 ? 104 ? 25 104 2 2 1MME B 1 ? 25 ? 1MME 114 ? 15 ? 114 15 3 1 1MME C 1 ? 16 ? 1MME 25 ? 104 ? 25 104 4 2 1MME D 1 ? 25 ? 1MME 114 ? 15 ? 114 15 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 25 N3 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 25 O2 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 25 N4 ? ? A G 25 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 23 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 22 B C 12 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 21 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 21 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 B C 20 N4 ? ? A C 30 B C 170 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog11 hydrog ? ? A U 10 O2 ? ? ? 1_555 B A 7 N6 ? ? A U 70 B A 140 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog12 hydrog ? ? A G 11 N2 ? ? ? 1_555 B A 6 N7 ? ? A G 80 B A 130 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A A 12 N7 ? ? ? 1_555 B G 5 N2 ? ? A A 90 B G 120 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 101 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 102 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 103 B G 113 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog21 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 104 B G 114 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog22 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 19 O4 ? ? B A 151 B U 161 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog23 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 152 B G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 153 B A 163 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog27 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 16 O6 ? ? B C 154 B G 164 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog28 hydrog ? ? B G 12 N2 ? L ? 1_555 B A 15 N7 ? L B G 31 B A 34 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog29 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 25 O2 ? ? C G 25 D C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog30 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 24 N1 ? ? C U 24 D A 14 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog31 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 23 N3 ? ? C G 23 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 23 O2 ? ? C G 23 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 23 N4 ? ? C G 23 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 22 N3 ? ? C G 22 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 22 O2 ? ? C G 22 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 22 N4 ? ? C G 22 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C U 5 N3 ? ? ? 1_555 D A 21 N1 ? ? C U 21 D A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C U 5 O4 ? ? ? 1_555 D A 21 N6 ? ? C U 21 D A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 6 O2 ? ? ? 1_555 D C 20 N4 ? ? C C 30 D C 170 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog40 hydrog ? ? C U 10 O2 ? ? ? 1_555 D A 7 N6 ? ? C U 70 D A 140 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog41 hydrog ? ? C A 12 N7 ? ? ? 1_555 D G 5 N2 ? ? C A 90 D G 120 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog42 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 101 D C 111 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog43 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 102 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 102 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 102 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 103 D G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 103 D G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 103 D G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 16 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 104 D G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 16 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 104 D G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 16 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 104 D G 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D C 9 N3 ? ? ? 1_555 D G 18 N1 ? ? D C 152 D G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D C 9 N4 ? ? ? 1_555 D G 18 O6 ? ? D C 152 D G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D C 9 O2 ? ? ? 1_555 D G 18 N2 ? ? D C 152 D G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D U 10 N3 ? ? ? 1_555 D A 17 N1 ? ? D U 153 D A 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D U 10 O4 ? ? ? 1_555 D A 17 N6 ? ? D U 153 D A 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D C 11 N3 ? ? ? 1_555 D G 16 N1 ? ? D C 154 D G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D C 11 N4 ? ? ? 1_555 D G 16 O6 ? ? D C 154 D G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D C 11 O2 ? ? ? 1_555 D G 16 N2 ? ? D C 154 D G 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D G 12 N2 ? L ? 1_555 D A 15 N7 ? L D G 31 D A 34 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N9 _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 140 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 140 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 140 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 104.55 _pdbx_validate_rmsd_angle.angle_target_value 112.00 _pdbx_validate_rmsd_angle.angle_deviation -7.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 25 ? ? 0.057 'SIDE CHAIN' 2 1 G A 50 ? ? 0.072 'SIDE CHAIN' 3 1 G B 113 ? ? 0.058 'SIDE CHAIN' 4 1 U B 153 ? ? 0.084 'SIDE CHAIN' 5 1 A B 33 L ? 0.086 'SIDE CHAIN' 6 1 G B 162 ? ? 0.074 'SIDE CHAIN' 7 1 U C 24 ? ? 0.068 'SIDE CHAIN' 8 1 U C 70 ? ? 0.075 'SIDE CHAIN' 9 1 A D 140 ? ? 0.068 'SIDE CHAIN' 10 1 U D 153 ? ? 0.079 'SIDE CHAIN' 11 1 G D 31 L ? 0.069 'SIDE CHAIN' 12 1 A D 33 L ? 0.079 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MME 'double helix' 1MME 'a-form double helix' 1MME tetraloop 1MME 'mismatched base pair' 1MME 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 20 1_555 A C 6 1_555 -2.837 -0.983 0.657 -51.793 -13.812 16.877 1 B_C170:C30_A B 170 ? A 30 ? ? ? 1 B A 21 1_555 A U 5 1_555 -0.057 -0.022 -0.813 -9.992 -0.849 1.955 2 B_A11:U21_A B 11 ? A 21 ? 20 1 1 B C 22 1_555 A G 4 1_555 -0.174 0.575 -0.656 1.374 -5.597 16.156 3 B_C12:G22_A B 12 ? A 22 ? ? 1 1 B C 23 1_555 A G 3 1_555 -0.608 -0.042 -0.704 2.738 -8.660 -3.597 4 B_C13:G23_A B 13 ? A 23 ? 19 1 1 B C 25 1_555 A G 1 1_555 0.876 -0.144 0.082 2.631 -10.550 -6.253 5 B_C15:G25_A B 15 ? A 25 ? 19 1 1 C C 16 1_555 D G 1 1_555 -0.535 0.182 0.226 -3.584 -12.202 -3.751 6 C_C104:G114_D C 104 ? D 114 ? 19 1 1 C C 15 1_555 D G 2 1_555 0.357 -0.193 -0.433 4.245 -18.414 0.480 7 C_C103:G113_D C 103 ? D 113 ? 19 1 1 C G 14 1_555 D C 3 1_555 -0.016 -0.216 -0.305 2.172 -12.762 -4.877 8 C_G102:C112_D C 102 ? D 112 ? 19 1 1 C G 13 1_555 D C 4 1_555 0.520 0.625 0.275 -7.993 -14.962 23.586 9 C_G101:C111_D C 101 ? D 111 ? ? 1 1 C A 12 1_555 D G 5 1_555 -6.636 -4.973 -0.937 -4.569 -22.966 -22.435 10 C_A90:G120_D C 90 ? D 120 ? ? 10 1 D A 7 1_555 C U 10 1_555 -5.042 0.495 0.857 22.793 -8.764 54.026 11 D_A140:U70_C D 140 ? C 70 ? ? ? 1 D C 9 1_555 D G 18 1_555 -0.180 0.144 1.085 -11.106 -13.179 1.960 12 D_C152:G162_D D 152 ? D 162 ? 19 1 1 D U 10 1_555 D A 17 1_555 -0.577 -0.003 0.398 0.794 -6.155 -3.964 13 D_U153:A163_D D 153 ? D 163 ? 20 1 1 D C 11 1_555 D G 16 1_555 1.661 -0.525 -0.134 13.620 -7.842 -7.107 14 D_C154:G164_D D 154 ? D 164 ? 19 1 1 D G 12 1_555 D A 15 1_555 7.508 -6.228 0.085 0.114 -19.111 -42.603 15 D_G31L:A34L_D D 31 L D 34 L ? ? 1 B A 15 1_555 B G 12 1_555 -7.812 -4.644 0.295 0.875 -20.641 -45.555 16 B_A34L:G31L_B B 34 L B 31 L ? ? 1 B G 16 1_555 B C 11 1_555 -1.683 -0.169 0.106 -9.437 -9.946 -15.906 17 B_G164:C154_B B 164 ? B 154 ? ? ? 1 B A 17 1_555 B U 10 1_555 1.550 0.275 0.418 -2.950 -7.135 -0.540 18 B_A163:U153_B B 163 ? B 153 ? ? ? 1 B G 18 1_555 B C 9 1_555 0.781 -0.061 1.008 6.063 -23.142 -3.302 19 B_G162:C152_B B 162 ? B 152 ? 19 1 1 B U 19 1_555 B A 8 1_555 -1.020 1.035 0.392 -2.520 -24.973 -44.663 20 B_U161:A151_B B 161 ? B 151 ? ? ? 1 A U 10 1_555 B A 7 1_555 5.588 -0.016 1.740 -33.958 -11.573 44.671 21 A_U70:A140_B A 70 ? B 140 ? ? 5 1 A G 11 1_555 B A 6 1_555 6.644 -5.453 -0.183 29.413 20.208 -1.994 22 A_G80:A130_B A 80 ? B 130 ? ? 10 1 A A 12 1_555 B G 5 1_555 -7.046 -5.573 -1.005 -14.176 -3.743 -25.377 23 A_A90:G120_B A 90 ? B 120 ? ? 10 1 A G 13 1_555 B C 4 1_555 -1.334 -0.450 -0.018 -5.722 -5.952 -6.583 24 A_G101:C111_B A 101 ? B 111 ? 19 1 1 A G 14 1_555 B C 3 1_555 0.761 -0.237 0.057 -3.493 -7.570 -10.809 25 A_G102:C112_B A 102 ? B 112 ? 19 1 1 A C 15 1_555 B G 2 1_555 1.239 -0.290 0.051 -2.362 -13.800 -15.183 26 A_C103:G113_B A 103 ? B 113 ? ? ? 1 A C 16 1_555 B G 1 1_555 -1.147 0.331 0.302 -3.549 -13.721 -13.268 27 A_C104:G114_B A 104 ? B 114 ? ? ? 1 D C 25 1_555 C G 1 1_555 1.631 -0.309 0.357 7.146 -17.263 -7.337 28 D_C15:G25_C D 15 ? C 25 ? ? 1 1 D A 24 1_555 C U 2 1_555 0.875 0.482 -0.170 2.565 -7.003 7.602 29 D_A14:U24_C D 14 ? C 24 ? ? ? 1 D C 23 1_555 C G 3 1_555 0.030 -0.418 -0.184 -2.202 -11.451 -6.500 30 D_C13:G23_C D 13 ? C 23 ? 19 1 1 D C 22 1_555 C G 4 1_555 -0.455 -0.191 -0.026 -1.759 -11.821 -4.149 31 D_C12:G22_C D 12 ? C 22 ? 19 1 1 D A 21 1_555 C U 5 1_555 0.257 -0.342 -0.080 1.443 -3.324 15.296 32 D_A11:U21_C D 11 ? C 21 ? 20 1 1 D C 20 1_555 C C 6 1_555 -2.875 -1.540 -0.076 -18.882 -15.962 21.494 33 D_C170:C30_C D 170 ? C 30 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 20 1_555 A C 6 1_555 B A 21 1_555 A U 5 1_555 -1.856 -1.161 2.371 6.904 -9.358 39.980 -0.922 3.143 2.239 -13.348 -9.848 41.571 1 BB_C170A11:U21C30_AA B 170 ? A 30 ? B 11 ? A 21 ? 1 B A 21 1_555 A U 5 1_555 B C 22 1_555 A G 4 1_555 0.931 -1.731 2.789 0.356 8.271 26.454 -5.169 -1.877 2.170 17.537 -0.756 27.697 2 BB_A11C12:G22U21_AA B 11 ? A 21 ? B 12 ? A 22 ? 1 B C 22 1_555 A G 4 1_555 B C 23 1_555 A G 3 1_555 -1.607 -2.022 3.221 -4.620 5.223 26.832 -5.445 2.275 3.010 11.021 9.748 27.707 3 BB_C12C13:G23G22_AA B 12 ? A 22 ? B 13 ? A 23 ? 1 B C 23 1_555 A G 3 1_555 B C 25 1_555 A G 1 1_555 -0.013 -2.105 6.774 -1.853 10.358 71.023 -2.508 -0.116 6.455 8.867 1.586 71.697 4 BB_C13C15:G25G23_AA B 13 ? A 23 ? B 15 ? A 25 ? 1 B C 25 1_555 A G 1 1_555 C C 16 1_555 D G 1 1_555 3.481 0.701 0.000 -6.087 -171.382 -168.234 -0.348 1.740 0.084 85.713 -3.044 -179.129 5 BC_C15C104:G114G25_DA B 15 ? A 25 ? C 104 ? D 114 ? 1 C C 16 1_555 D G 1 1_555 C C 15 1_555 D G 2 1_555 0.198 1.232 -3.423 -1.302 -13.963 -27.206 -5.001 0.624 -2.496 27.488 -2.563 -30.546 6 CC_C104C103:G113G114_DD C 104 ? D 114 ? C 103 ? D 113 ? 1 C C 15 1_555 D G 2 1_555 C G 14 1_555 D C 3 1_555 -0.283 1.048 -3.375 -6.093 0.029 -34.606 -1.732 0.478 -3.375 -0.049 -10.145 -35.122 7 CC_C103G102:C112G113_DD C 103 ? D 113 ? C 102 ? D 112 ? 1 C G 14 1_555 D C 3 1_555 C G 13 1_555 D C 4 1_555 0.671 1.471 -2.869 -3.364 -4.498 -29.975 -3.544 1.835 -2.537 8.602 -6.432 -30.485 8 CC_G102G101:C111C112_DD C 102 ? D 112 ? C 101 ? D 111 ? 1 C G 13 1_555 D C 4 1_555 C A 12 1_555 D G 5 1_555 -1.847 0.110 -3.994 3.633 2.617 -62.360 0.037 -1.979 -3.893 -2.524 3.504 -62.505 9 CC_G101A90:G120C111_DD C 101 ? D 111 ? C 90 ? D 120 ? 1 C A 12 1_555 D G 5 1_555 D A 7 1_555 C U 10 1_555 3.692 -6.467 0.370 162.903 -25.950 94.154 -3.129 -1.117 3.433 -13.290 -83.426 169.772 10 CD_A90A140:U70G120_CD C 90 ? D 120 ? D 140 ? C 70 ? 1 D A 7 1_555 C U 10 1_555 D C 9 1_555 D G 18 1_555 0.066 -1.869 6.632 -18.396 11.639 98.500 -1.583 -0.622 6.376 7.615 12.036 100.265 11 DD_A140C152:G162U70_DC D 140 ? C 70 ? D 152 ? D 162 ? 1 D C 9 1_555 D G 18 1_555 D U 10 1_555 D A 17 1_555 -0.820 -1.452 2.793 -4.509 -0.876 33.891 -2.349 0.772 2.910 -1.494 7.692 34.192 12 DD_C152U153:A163G162_DD D 152 ? D 162 ? D 153 ? D 163 ? 1 D U 10 1_555 D A 17 1_555 D C 11 1_555 D G 16 1_555 -0.416 -1.088 3.151 2.147 -6.417 47.411 -0.841 0.680 3.243 -7.933 -2.655 47.863 13 DD_U153C154:G164A163_DD D 153 ? D 163 ? D 154 ? D 164 ? 1 D C 11 1_555 D G 16 1_555 D G 12 1_555 D A 15 1_555 -4.125 -1.861 4.105 5.819 19.779 43.886 -3.932 5.532 2.554 24.898 -7.325 48.270 14 DD_C154G31L:A34LG164_DD D 154 ? D 164 ? D 31 L D 34 L 1 B A 15 1_555 B G 12 1_555 B G 16 1_555 B C 11 1_555 3.680 -2.003 3.968 -3.553 16.783 35.640 -5.023 -5.889 2.454 25.669 5.433 39.433 15 BB_A34LG164:C154G31L_BB B 34 L B 31 L B 164 ? B 154 ? 1 B G 16 1_555 B C 11 1_555 B A 17 1_555 B U 10 1_555 0.730 -1.427 3.258 0.123 -1.297 52.764 -1.521 -0.814 3.292 -1.459 -0.138 52.779 16 BB_G164A163:U153C154_BB B 164 ? B 154 ? B 163 ? B 153 ? 1 B A 17 1_555 B U 10 1_555 B G 18 1_555 B C 9 1_555 0.328 -1.315 2.840 4.046 2.396 33.791 -2.569 -0.007 2.762 4.097 -6.918 34.107 17 BB_A163G162:C152U153_BB B 163 ? B 153 ? B 162 ? B 152 ? 1 B G 18 1_555 B C 9 1_555 B U 19 1_555 B A 8 1_555 -1.898 -1.534 3.390 5.496 2.621 21.890 -4.783 6.682 2.640 6.736 -14.125 22.711 18 BB_G162U161:A151C152_BB B 162 ? B 152 ? B 161 ? B 151 ? 1 B U 19 1_555 B A 8 1_555 A U 10 1_555 B A 7 1_555 2.127 -1.985 3.787 5.249 10.872 74.562 -1.999 -1.558 3.633 8.918 -4.306 75.393 19 BA_U161U70:A140A151_BB B 161 ? B 151 ? A 70 ? B 140 ? 1 A U 10 1_555 B A 7 1_555 A G 11 1_555 B A 6 1_555 -3.092 -1.296 1.719 11.096 -1.179 42.355 -1.694 4.591 0.952 -1.598 -15.047 43.735 20 AA_U70G80:A130A140_BB A 70 ? B 140 ? A 80 ? B 130 ? 1 A G 11 1_555 B A 6 1_555 A A 12 1_555 B G 5 1_555 -1.718 -1.442 4.125 -2.649 11.179 -28.822 -0.153 -3.892 4.209 -21.416 -5.074 -30.983 21 AA_G80A90:G120A130_BB A 80 ? B 130 ? A 90 ? B 120 ? 1 A A 12 1_555 B G 5 1_555 A G 13 1_555 B C 4 1_555 0.692 -1.515 3.356 -1.630 -2.784 54.637 -1.476 -0.854 3.403 -3.030 1.774 54.725 22 AA_A90G101:C111G120_BB A 90 ? B 120 ? A 101 ? B 111 ? 1 A G 13 1_555 B C 4 1_555 A G 14 1_555 B C 3 1_555 0.528 -2.415 3.170 -1.585 0.428 41.440 -3.454 -0.908 3.124 0.605 2.239 41.471 23 AA_G101G102:C112C111_BB A 101 ? B 111 ? A 102 ? B 112 ? 1 A G 14 1_555 B C 3 1_555 A C 15 1_555 B G 2 1_555 -0.115 -1.034 3.405 4.021 -5.880 39.020 -0.795 0.669 3.490 -8.714 -5.959 39.640 24 AA_G102C103:G113C112_BB A 102 ? B 112 ? A 103 ? B 113 ? 1 A C 15 1_555 B G 2 1_555 A C 16 1_555 B G 1 1_555 0.473 -2.156 3.092 2.767 10.422 19.330 -8.772 -0.398 1.759 28.361 -7.528 22.110 25 AA_C103C104:G114G113_BB A 103 ? B 113 ? A 104 ? B 114 ? 1 A C 16 1_555 B G 1 1_555 D C 25 1_555 C G 1 1_555 3.691 0.845 -0.232 -7.417 -165.352 -117.353 -0.411 1.849 0.323 83.721 -3.755 -172.486 26 AD_C104C15:G25G114_CB A 104 ? B 114 ? D 15 ? C 25 ? 1 D C 25 1_555 C G 1 1_555 D A 24 1_555 C U 2 1_555 0.131 0.895 -3.080 1.583 -7.181 -40.826 -1.968 0.029 -2.891 10.194 2.247 -41.455 27 DD_C15A14:U24G25_CC D 15 ? C 25 ? D 14 ? C 24 ? 1 D A 24 1_555 C U 2 1_555 D C 23 1_555 C G 3 1_555 -0.308 1.101 -3.138 -1.560 -11.165 -36.928 -2.932 -0.290 -2.714 17.143 -2.396 -38.554 28 DD_A14C13:G23U24_CC D 14 ? C 24 ? D 13 ? C 23 ? 1 D C 23 1_555 C G 3 1_555 D C 22 1_555 C G 4 1_555 0.568 2.592 -3.346 -1.326 -0.874 -29.457 -5.278 1.400 -3.241 1.718 -2.605 -29.499 29 DD_C13C12:G22G23_CC D 13 ? C 23 ? D 12 ? C 22 ? 1 D C 22 1_555 C G 4 1_555 D A 21 1_555 C U 5 1_555 -0.122 2.461 -3.361 -6.015 -2.291 -17.166 -8.985 2.915 -2.884 7.350 -19.291 -18.325 30 DD_C12A11:U21G22_CC D 12 ? C 22 ? D 11 ? C 21 ? 1 D A 21 1_555 C U 5 1_555 D C 20 1_555 C C 6 1_555 0.842 1.083 -2.943 0.697 3.019 -43.559 -1.193 1.071 -3.021 -4.062 0.938 -43.663 31 DD_A11C170:C30U21_CC D 11 ? C 21 ? D 170 ? C 30 ? # _atom_sites.entry_id 1MME _atom_sites.fract_transf_matrix[1][1] 0.015389 _atom_sites.fract_transf_matrix[1][2] 0.008885 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017770 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007239 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_