data_1MQ3 # _entry.id 1MQ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MQ3 pdb_00001mq3 10.2210/pdb1mq3/pdb NDB PD0344 ? ? RCSB RCSB017088 ? ? WWPDB D_1000017088 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-28 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.conn_type_id' 24 4 'Structure model' '_struct_conn.id' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_conn_type.id' 42 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MQ3 _pdbx_database_status.recvd_initial_deposition_date 2002-09-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BPX '1bpx is Human DNA Polymerase Beta Complexed With Gapped DNA' unspecified PDB 1BPY '1bpy is Human DNA Polymerase Beta Complexed With Gapped DNA and Ddctp' unspecified PDB 1MQ2 '1MQ2 IS Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Krahn, J.M.' 1 'Beard, W.A.' 2 'Miller, H.' 3 'Grollman, A.P.' 4 'Wilson, S.H.' 5 # _citation.id primary _citation.title ;Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals Structural Insights into its Coding Potential ; _citation.journal_abbrev Structure _citation.journal_volume 11 _citation.page_first 121 _citation.page_last 127 _citation.year 2003 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12517346 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(02)00930-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Krahn, J.M.' 1 ? primary 'Beard, W.A.' 2 ? primary 'Miller, H.' 3 ? primary 'Grollman, A.P.' 4 ? primary 'Wilson, S.H.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'" 4885.157 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'" 3045.005 1 ? ? ? ? 3 polymer syn "5'-D(P*GP*TP*CP*GP*G)-3'" 1536.035 1 ? ? ? ? 4 polymer man 'DNA POLYMERASE BETA' 38241.672 1 2.7.7.7 ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 7 non-polymer syn "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 467.157 1 ? ? ? ? 8 water nat water 18.015 78 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(DG)(DA)(DC)(8OG)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACGGCGCATCAGC T ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DOC)' GCTGATGCGC P ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? 4 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MAGNESIUM ION' MG 6 'SODIUM ION' NA 7 "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" DCP 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 8OG n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DOC n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DG n 4 1 MET n 4 2 SER n 4 3 LYS n 4 4 ARG n 4 5 LYS n 4 6 ALA n 4 7 PRO n 4 8 GLN n 4 9 GLU n 4 10 THR n 4 11 LEU n 4 12 ASN n 4 13 GLY n 4 14 GLY n 4 15 ILE n 4 16 THR n 4 17 ASP n 4 18 MET n 4 19 LEU n 4 20 THR n 4 21 GLU n 4 22 LEU n 4 23 ALA n 4 24 ASN n 4 25 PHE n 4 26 GLU n 4 27 LYS n 4 28 ASN n 4 29 VAL n 4 30 SER n 4 31 GLN n 4 32 ALA n 4 33 ILE n 4 34 HIS n 4 35 LYS n 4 36 TYR n 4 37 ASN n 4 38 ALA n 4 39 TYR n 4 40 ARG n 4 41 LYS n 4 42 ALA n 4 43 ALA n 4 44 SER n 4 45 VAL n 4 46 ILE n 4 47 ALA n 4 48 LYS n 4 49 TYR n 4 50 PRO n 4 51 HIS n 4 52 LYS n 4 53 ILE n 4 54 LYS n 4 55 SER n 4 56 GLY n 4 57 ALA n 4 58 GLU n 4 59 ALA n 4 60 LYS n 4 61 LYS n 4 62 LEU n 4 63 PRO n 4 64 GLY n 4 65 VAL n 4 66 GLY n 4 67 THR n 4 68 LYS n 4 69 ILE n 4 70 ALA n 4 71 GLU n 4 72 LYS n 4 73 ILE n 4 74 ASP n 4 75 GLU n 4 76 PHE n 4 77 LEU n 4 78 ALA n 4 79 THR n 4 80 GLY n 4 81 LYS n 4 82 LEU n 4 83 ARG n 4 84 LYS n 4 85 LEU n 4 86 GLU n 4 87 LYS n 4 88 ILE n 4 89 ARG n 4 90 GLN n 4 91 ASP n 4 92 ASP n 4 93 THR n 4 94 SER n 4 95 SER n 4 96 SER n 4 97 ILE n 4 98 ASN n 4 99 PHE n 4 100 LEU n 4 101 THR n 4 102 ARG n 4 103 VAL n 4 104 SER n 4 105 GLY n 4 106 ILE n 4 107 GLY n 4 108 PRO n 4 109 SER n 4 110 ALA n 4 111 ALA n 4 112 ARG n 4 113 LYS n 4 114 PHE n 4 115 VAL n 4 116 ASP n 4 117 GLU n 4 118 GLY n 4 119 ILE n 4 120 LYS n 4 121 THR n 4 122 LEU n 4 123 GLU n 4 124 ASP n 4 125 LEU n 4 126 ARG n 4 127 LYS n 4 128 ASN n 4 129 GLU n 4 130 ASP n 4 131 LYS n 4 132 LEU n 4 133 ASN n 4 134 HIS n 4 135 HIS n 4 136 GLN n 4 137 ARG n 4 138 ILE n 4 139 GLY n 4 140 LEU n 4 141 LYS n 4 142 TYR n 4 143 PHE n 4 144 GLY n 4 145 ASP n 4 146 PHE n 4 147 GLU n 4 148 LYS n 4 149 ARG n 4 150 ILE n 4 151 PRO n 4 152 ARG n 4 153 GLU n 4 154 GLU n 4 155 MET n 4 156 LEU n 4 157 GLN n 4 158 MET n 4 159 GLN n 4 160 ASP n 4 161 ILE n 4 162 VAL n 4 163 LEU n 4 164 ASN n 4 165 GLU n 4 166 VAL n 4 167 LYS n 4 168 LYS n 4 169 VAL n 4 170 ASP n 4 171 SER n 4 172 GLU n 4 173 TYR n 4 174 ILE n 4 175 ALA n 4 176 THR n 4 177 VAL n 4 178 CYS n 4 179 GLY n 4 180 SER n 4 181 PHE n 4 182 ARG n 4 183 ARG n 4 184 GLY n 4 185 ALA n 4 186 GLU n 4 187 SER n 4 188 SER n 4 189 GLY n 4 190 ASP n 4 191 MET n 4 192 ASP n 4 193 VAL n 4 194 LEU n 4 195 LEU n 4 196 THR n 4 197 HIS n 4 198 PRO n 4 199 SER n 4 200 PHE n 4 201 THR n 4 202 SER n 4 203 GLU n 4 204 SER n 4 205 THR n 4 206 LYS n 4 207 GLN n 4 208 PRO n 4 209 LYS n 4 210 LEU n 4 211 LEU n 4 212 HIS n 4 213 GLN n 4 214 VAL n 4 215 VAL n 4 216 GLU n 4 217 GLN n 4 218 LEU n 4 219 GLN n 4 220 LYS n 4 221 VAL n 4 222 HIS n 4 223 PHE n 4 224 ILE n 4 225 THR n 4 226 ASP n 4 227 THR n 4 228 LEU n 4 229 SER n 4 230 LYS n 4 231 GLY n 4 232 GLU n 4 233 THR n 4 234 LYS n 4 235 PHE n 4 236 MET n 4 237 GLY n 4 238 VAL n 4 239 CYS n 4 240 GLN n 4 241 LEU n 4 242 PRO n 4 243 SER n 4 244 LYS n 4 245 ASN n 4 246 ASP n 4 247 GLU n 4 248 LYS n 4 249 GLU n 4 250 TYR n 4 251 PRO n 4 252 HIS n 4 253 ARG n 4 254 ARG n 4 255 ILE n 4 256 ASP n 4 257 ILE n 4 258 ARG n 4 259 LEU n 4 260 ILE n 4 261 PRO n 4 262 LYS n 4 263 ASP n 4 264 GLN n 4 265 TYR n 4 266 TYR n 4 267 CYS n 4 268 GLY n 4 269 VAL n 4 270 LEU n 4 271 TYR n 4 272 PHE n 4 273 THR n 4 274 GLY n 4 275 SER n 4 276 ASP n 4 277 ILE n 4 278 PHE n 4 279 ASN n 4 280 LYS n 4 281 ASN n 4 282 MET n 4 283 ARG n 4 284 ALA n 4 285 HIS n 4 286 ALA n 4 287 LEU n 4 288 GLU n 4 289 LYS n 4 290 GLY n 4 291 PHE n 4 292 THR n 4 293 ILE n 4 294 ASN n 4 295 GLU n 4 296 TYR n 4 297 THR n 4 298 ILE n 4 299 ARG n 4 300 PRO n 4 301 LEU n 4 302 GLY n 4 303 VAL n 4 304 THR n 4 305 GLY n 4 306 VAL n 4 307 ALA n 4 308 GLY n 4 309 GLU n 4 310 PRO n 4 311 LEU n 4 312 PRO n 4 313 VAL n 4 314 ASP n 4 315 SER n 4 316 GLU n 4 317 LYS n 4 318 ASP n 4 319 ILE n 4 320 PHE n 4 321 ASP n 4 322 TYR n 4 323 ILE n 4 324 GLN n 4 325 TRP n 4 326 LYS n 4 327 TYR n 4 328 ARG n 4 329 GLU n 4 330 PRO n 4 331 LYS n 4 332 ASP n 4 333 ARG n 4 334 SER n 4 335 GLU n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCP non-polymer . "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O13 P3' 467.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C T . n A 1 2 DC 2 2 2 DC C T . n A 1 3 DG 3 3 3 DG G T . n A 1 4 DA 4 4 4 DA A T . n A 1 5 DC 5 5 5 DC C T . n A 1 6 8OG 6 6 6 8OG 8OG T . n A 1 7 DG 7 7 7 DG G T . n A 1 8 DC 8 8 8 DC C T . n A 1 9 DG 9 9 9 DG G T . n A 1 10 DC 10 10 10 DC C T . n A 1 11 DA 11 11 11 DA A T . n A 1 12 DT 12 12 12 DT T T . n A 1 13 DC 13 13 13 DC C T . n A 1 14 DA 14 14 14 DA A T . n A 1 15 DG 15 15 15 DG G T . n A 1 16 DC 16 16 16 DC C T . n B 2 1 DG 1 1 1 DG G P . n B 2 2 DC 2 2 2 DC C P . n B 2 3 DT 3 3 3 DT T P . n B 2 4 DG 4 4 4 DG G P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DT 6 6 6 DT T P . n B 2 7 DG 7 7 7 DG G P . n B 2 8 DC 8 8 8 DC C P . n B 2 9 DG 9 9 9 DG G P . n B 2 10 DOC 10 10 10 DOC DOC P . n C 3 1 DG 1 1 1 DG G D . n C 3 2 DT 2 2 2 DT T D . n C 3 3 DC 3 3 3 DC C D . n C 3 4 DG 4 4 4 DG G D . n C 3 5 DG 5 5 5 DG G D . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 ? ? ? A . n D 4 3 LYS 3 3 ? ? ? A . n D 4 4 ARG 4 4 ? ? ? A . n D 4 5 LYS 5 5 ? ? ? A . n D 4 6 ALA 6 6 ? ? ? A . n D 4 7 PRO 7 7 ? ? ? A . n D 4 8 GLN 8 8 ? ? ? A . n D 4 9 GLU 9 9 ? ? ? A . n D 4 10 THR 10 10 10 THR THR A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 ASN 12 12 12 ASN ASN A . n D 4 13 GLY 13 13 13 GLY GLY A . n D 4 14 GLY 14 14 14 GLY GLY A . n D 4 15 ILE 15 15 15 ILE ILE A . n D 4 16 THR 16 16 16 THR THR A . n D 4 17 ASP 17 17 17 ASP ASP A . n D 4 18 MET 18 18 18 MET MET A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 THR 20 20 20 THR THR A . n D 4 21 GLU 21 21 21 GLU GLU A . n D 4 22 LEU 22 22 22 LEU LEU A . n D 4 23 ALA 23 23 23 ALA ALA A . n D 4 24 ASN 24 24 24 ASN ASN A . n D 4 25 PHE 25 25 25 PHE PHE A . n D 4 26 GLU 26 26 26 GLU GLU A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 VAL 29 29 29 VAL VAL A . n D 4 30 SER 30 30 30 SER SER A . n D 4 31 GLN 31 31 31 GLN GLN A . n D 4 32 ALA 32 32 32 ALA ALA A . n D 4 33 ILE 33 33 33 ILE ILE A . n D 4 34 HIS 34 34 34 HIS HIS A . n D 4 35 LYS 35 35 35 LYS LYS A . n D 4 36 TYR 36 36 36 TYR TYR A . n D 4 37 ASN 37 37 37 ASN ASN A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 TYR 39 39 39 TYR TYR A . n D 4 40 ARG 40 40 40 ARG ARG A . n D 4 41 LYS 41 41 41 LYS LYS A . n D 4 42 ALA 42 42 42 ALA ALA A . n D 4 43 ALA 43 43 43 ALA ALA A . n D 4 44 SER 44 44 44 SER SER A . n D 4 45 VAL 45 45 45 VAL VAL A . n D 4 46 ILE 46 46 46 ILE ILE A . n D 4 47 ALA 47 47 47 ALA ALA A . n D 4 48 LYS 48 48 48 LYS LYS A . n D 4 49 TYR 49 49 49 TYR TYR A . n D 4 50 PRO 50 50 50 PRO PRO A . n D 4 51 HIS 51 51 51 HIS HIS A . n D 4 52 LYS 52 52 52 LYS LYS A . n D 4 53 ILE 53 53 53 ILE ILE A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 SER 55 55 55 SER SER A . n D 4 56 GLY 56 56 56 GLY GLY A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 GLU 58 58 58 GLU GLU A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 LYS 60 60 60 LYS LYS A . n D 4 61 LYS 61 61 61 LYS LYS A . n D 4 62 LEU 62 62 62 LEU LEU A . n D 4 63 PRO 63 63 63 PRO PRO A . n D 4 64 GLY 64 64 64 GLY GLY A . n D 4 65 VAL 65 65 65 VAL VAL A . n D 4 66 GLY 66 66 66 GLY GLY A . n D 4 67 THR 67 67 67 THR THR A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 ALA 70 70 70 ALA ALA A . n D 4 71 GLU 71 71 71 GLU GLU A . n D 4 72 LYS 72 72 72 LYS LYS A . n D 4 73 ILE 73 73 73 ILE ILE A . n D 4 74 ASP 74 74 74 ASP ASP A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 PHE 76 76 76 PHE PHE A . n D 4 77 LEU 77 77 77 LEU LEU A . n D 4 78 ALA 78 78 78 ALA ALA A . n D 4 79 THR 79 79 79 THR THR A . n D 4 80 GLY 80 80 80 GLY GLY A . n D 4 81 LYS 81 81 81 LYS LYS A . n D 4 82 LEU 82 82 82 LEU LEU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 LYS 84 84 84 LYS LYS A . n D 4 85 LEU 85 85 85 LEU LEU A . n D 4 86 GLU 86 86 86 GLU GLU A . n D 4 87 LYS 87 87 87 LYS LYS A . n D 4 88 ILE 88 88 88 ILE ILE A . n D 4 89 ARG 89 89 89 ARG ARG A . n D 4 90 GLN 90 90 90 GLN GLN A . n D 4 91 ASP 91 91 91 ASP ASP A . n D 4 92 ASP 92 92 92 ASP ASP A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 94 SER SER A . n D 4 95 SER 95 95 95 SER SER A . n D 4 96 SER 96 96 96 SER SER A . n D 4 97 ILE 97 97 97 ILE ILE A . n D 4 98 ASN 98 98 98 ASN ASN A . n D 4 99 PHE 99 99 99 PHE PHE A . n D 4 100 LEU 100 100 100 LEU LEU A . n D 4 101 THR 101 101 101 THR THR A . n D 4 102 ARG 102 102 102 ARG ARG A . n D 4 103 VAL 103 103 103 VAL VAL A . n D 4 104 SER 104 104 104 SER SER A . n D 4 105 GLY 105 105 105 GLY GLY A . n D 4 106 ILE 106 106 106 ILE ILE A . n D 4 107 GLY 107 107 107 GLY GLY A . n D 4 108 PRO 108 108 108 PRO PRO A . n D 4 109 SER 109 109 109 SER SER A . n D 4 110 ALA 110 110 110 ALA ALA A . n D 4 111 ALA 111 111 111 ALA ALA A . n D 4 112 ARG 112 112 112 ARG ARG A . n D 4 113 LYS 113 113 113 LYS LYS A . n D 4 114 PHE 114 114 114 PHE PHE A . n D 4 115 VAL 115 115 115 VAL VAL A . n D 4 116 ASP 116 116 116 ASP ASP A . n D 4 117 GLU 117 117 117 GLU GLU A . n D 4 118 GLY 118 118 118 GLY GLY A . n D 4 119 ILE 119 119 119 ILE ILE A . n D 4 120 LYS 120 120 120 LYS LYS A . n D 4 121 THR 121 121 121 THR THR A . n D 4 122 LEU 122 122 122 LEU LEU A . n D 4 123 GLU 123 123 123 GLU GLU A . n D 4 124 ASP 124 124 124 ASP ASP A . n D 4 125 LEU 125 125 125 LEU LEU A . n D 4 126 ARG 126 126 126 ARG ARG A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 ASN 128 128 128 ASN ASN A . n D 4 129 GLU 129 129 129 GLU GLU A . n D 4 130 ASP 130 130 130 ASP ASP A . n D 4 131 LYS 131 131 131 LYS LYS A . n D 4 132 LEU 132 132 132 LEU LEU A . n D 4 133 ASN 133 133 133 ASN ASN A . n D 4 134 HIS 134 134 134 HIS HIS A . n D 4 135 HIS 135 135 135 HIS HIS A . n D 4 136 GLN 136 136 136 GLN GLN A . n D 4 137 ARG 137 137 137 ARG ARG A . n D 4 138 ILE 138 138 138 ILE ILE A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 LEU 140 140 140 LEU LEU A . n D 4 141 LYS 141 141 141 LYS LYS A . n D 4 142 TYR 142 142 142 TYR TYR A . n D 4 143 PHE 143 143 143 PHE PHE A . n D 4 144 GLY 144 144 144 GLY GLY A . n D 4 145 ASP 145 145 145 ASP ASP A . n D 4 146 PHE 146 146 146 PHE PHE A . n D 4 147 GLU 147 147 147 GLU GLU A . n D 4 148 LYS 148 148 148 LYS LYS A . n D 4 149 ARG 149 149 149 ARG ARG A . n D 4 150 ILE 150 150 150 ILE ILE A . n D 4 151 PRO 151 151 151 PRO PRO A . n D 4 152 ARG 152 152 152 ARG ARG A . n D 4 153 GLU 153 153 153 GLU GLU A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 MET 155 155 155 MET MET A . n D 4 156 LEU 156 156 156 LEU LEU A . n D 4 157 GLN 157 157 157 GLN GLN A . n D 4 158 MET 158 158 158 MET MET A . n D 4 159 GLN 159 159 159 GLN GLN A . n D 4 160 ASP 160 160 160 ASP ASP A . n D 4 161 ILE 161 161 161 ILE ILE A . n D 4 162 VAL 162 162 162 VAL VAL A . n D 4 163 LEU 163 163 163 LEU LEU A . n D 4 164 ASN 164 164 164 ASN ASN A . n D 4 165 GLU 165 165 165 GLU GLU A . n D 4 166 VAL 166 166 166 VAL VAL A . n D 4 167 LYS 167 167 167 LYS LYS A . n D 4 168 LYS 168 168 168 LYS LYS A . n D 4 169 VAL 169 169 169 VAL VAL A . n D 4 170 ASP 170 170 170 ASP ASP A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 GLU 172 172 172 GLU GLU A . n D 4 173 TYR 173 173 173 TYR TYR A . n D 4 174 ILE 174 174 174 ILE ILE A . n D 4 175 ALA 175 175 175 ALA ALA A . n D 4 176 THR 176 176 176 THR THR A . n D 4 177 VAL 177 177 177 VAL VAL A . n D 4 178 CYS 178 178 178 CYS CYS A . n D 4 179 GLY 179 179 179 GLY GLY A . n D 4 180 SER 180 180 180 SER SER A . n D 4 181 PHE 181 181 181 PHE PHE A . n D 4 182 ARG 182 182 182 ARG ARG A . n D 4 183 ARG 183 183 183 ARG ARG A . n D 4 184 GLY 184 184 184 GLY GLY A . n D 4 185 ALA 185 185 185 ALA ALA A . n D 4 186 GLU 186 186 186 GLU GLU A . n D 4 187 SER 187 187 187 SER SER A . n D 4 188 SER 188 188 188 SER SER A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 ASP 190 190 190 ASP ASP A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 ASP 192 192 192 ASP ASP A . n D 4 193 VAL 193 193 193 VAL VAL A . n D 4 194 LEU 194 194 194 LEU LEU A . n D 4 195 LEU 195 195 195 LEU LEU A . n D 4 196 THR 196 196 196 THR THR A . n D 4 197 HIS 197 197 197 HIS HIS A . n D 4 198 PRO 198 198 198 PRO PRO A . n D 4 199 SER 199 199 199 SER SER A . n D 4 200 PHE 200 200 200 PHE PHE A . n D 4 201 THR 201 201 201 THR THR A . n D 4 202 SER 202 202 202 SER SER A . n D 4 203 GLU 203 203 203 GLU GLU A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 THR 205 205 205 THR THR A . n D 4 206 LYS 206 206 206 LYS LYS A . n D 4 207 GLN 207 207 207 GLN GLN A . n D 4 208 PRO 208 208 208 PRO PRO A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 LEU 210 210 210 LEU LEU A . n D 4 211 LEU 211 211 211 LEU LEU A . n D 4 212 HIS 212 212 212 HIS HIS A . n D 4 213 GLN 213 213 213 GLN GLN A . n D 4 214 VAL 214 214 214 VAL VAL A . n D 4 215 VAL 215 215 215 VAL VAL A . n D 4 216 GLU 216 216 216 GLU GLU A . n D 4 217 GLN 217 217 217 GLN GLN A . n D 4 218 LEU 218 218 218 LEU LEU A . n D 4 219 GLN 219 219 219 GLN GLN A . n D 4 220 LYS 220 220 220 LYS LYS A . n D 4 221 VAL 221 221 221 VAL VAL A . n D 4 222 HIS 222 222 222 HIS HIS A . n D 4 223 PHE 223 223 223 PHE PHE A . n D 4 224 ILE 224 224 224 ILE ILE A . n D 4 225 THR 225 225 225 THR THR A . n D 4 226 ASP 226 226 226 ASP ASP A . n D 4 227 THR 227 227 227 THR THR A . n D 4 228 LEU 228 228 228 LEU LEU A . n D 4 229 SER 229 229 229 SER SER A . n D 4 230 LYS 230 230 230 LYS LYS A . n D 4 231 GLY 231 231 231 GLY GLY A . n D 4 232 GLU 232 232 232 GLU GLU A . n D 4 233 THR 233 233 233 THR THR A . n D 4 234 LYS 234 234 234 LYS LYS A . n D 4 235 PHE 235 235 235 PHE PHE A . n D 4 236 MET 236 236 236 MET MET A . n D 4 237 GLY 237 237 237 GLY GLY A . n D 4 238 VAL 238 238 238 VAL VAL A . n D 4 239 CYS 239 239 239 CYS CYS A . n D 4 240 GLN 240 240 240 GLN GLN A . n D 4 241 LEU 241 241 241 LEU LEU A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 SER 243 243 243 SER SER A . n D 4 244 LYS 244 244 244 LYS LYS A . n D 4 245 ASN 245 245 245 ASN ASN A . n D 4 246 ASP 246 246 246 ASP ASP A . n D 4 247 GLU 247 247 247 GLU GLU A . n D 4 248 LYS 248 248 248 LYS LYS A . n D 4 249 GLU 249 249 249 GLU GLU A . n D 4 250 TYR 250 250 250 TYR TYR A . n D 4 251 PRO 251 251 251 PRO PRO A . n D 4 252 HIS 252 252 252 HIS HIS A . n D 4 253 ARG 253 253 253 ARG ARG A . n D 4 254 ARG 254 254 254 ARG ARG A . n D 4 255 ILE 255 255 255 ILE ILE A . n D 4 256 ASP 256 256 256 ASP ASP A . n D 4 257 ILE 257 257 257 ILE ILE A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 LEU 259 259 259 LEU LEU A . n D 4 260 ILE 260 260 260 ILE ILE A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 LYS 262 262 262 LYS LYS A . n D 4 263 ASP 263 263 263 ASP ASP A . n D 4 264 GLN 264 264 264 GLN GLN A . n D 4 265 TYR 265 265 265 TYR TYR A . n D 4 266 TYR 266 266 266 TYR TYR A . n D 4 267 CYS 267 267 267 CYS CYS A . n D 4 268 GLY 268 268 268 GLY GLY A . n D 4 269 VAL 269 269 269 VAL VAL A . n D 4 270 LEU 270 270 270 LEU LEU A . n D 4 271 TYR 271 271 271 TYR TYR A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 THR 273 273 273 THR THR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 SER 275 275 275 SER SER A . n D 4 276 ASP 276 276 276 ASP ASP A . n D 4 277 ILE 277 277 277 ILE ILE A . n D 4 278 PHE 278 278 278 PHE PHE A . n D 4 279 ASN 279 279 279 ASN ASN A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 ASN 281 281 281 ASN ASN A . n D 4 282 MET 282 282 282 MET MET A . n D 4 283 ARG 283 283 283 ARG ARG A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 HIS 285 285 285 HIS HIS A . n D 4 286 ALA 286 286 286 ALA ALA A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 GLU 288 288 288 GLU GLU A . n D 4 289 LYS 289 289 289 LYS LYS A . n D 4 290 GLY 290 290 290 GLY GLY A . n D 4 291 PHE 291 291 291 PHE PHE A . n D 4 292 THR 292 292 292 THR THR A . n D 4 293 ILE 293 293 293 ILE ILE A . n D 4 294 ASN 294 294 294 ASN ASN A . n D 4 295 GLU 295 295 295 GLU GLU A . n D 4 296 TYR 296 296 296 TYR TYR A . n D 4 297 THR 297 297 297 THR THR A . n D 4 298 ILE 298 298 298 ILE ILE A . n D 4 299 ARG 299 299 299 ARG ARG A . n D 4 300 PRO 300 300 300 PRO PRO A . n D 4 301 LEU 301 301 301 LEU LEU A . n D 4 302 GLY 302 302 302 GLY GLY A . n D 4 303 VAL 303 303 303 VAL VAL A . n D 4 304 THR 304 304 304 THR THR A . n D 4 305 GLY 305 305 305 GLY GLY A . n D 4 306 VAL 306 306 306 VAL VAL A . n D 4 307 ALA 307 307 307 ALA ALA A . n D 4 308 GLY 308 308 308 GLY GLY A . n D 4 309 GLU 309 309 309 GLU GLU A . n D 4 310 PRO 310 310 310 PRO PRO A . n D 4 311 LEU 311 311 311 LEU LEU A . n D 4 312 PRO 312 312 312 PRO PRO A . n D 4 313 VAL 313 313 313 VAL VAL A . n D 4 314 ASP 314 314 314 ASP ASP A . n D 4 315 SER 315 315 315 SER SER A . n D 4 316 GLU 316 316 316 GLU GLU A . n D 4 317 LYS 317 317 317 LYS LYS A . n D 4 318 ASP 318 318 318 ASP ASP A . n D 4 319 ILE 319 319 319 ILE ILE A . n D 4 320 PHE 320 320 320 PHE PHE A . n D 4 321 ASP 321 321 321 ASP ASP A . n D 4 322 TYR 322 322 322 TYR TYR A . n D 4 323 ILE 323 323 323 ILE ILE A . n D 4 324 GLN 324 324 324 GLN GLN A . n D 4 325 TRP 325 325 325 TRP TRP A . n D 4 326 LYS 326 326 326 LYS LYS A . n D 4 327 TYR 327 327 327 TYR TYR A . n D 4 328 ARG 328 328 328 ARG ARG A . n D 4 329 GLU 329 329 329 GLU GLU A . n D 4 330 PRO 330 330 330 PRO PRO A . n D 4 331 LYS 331 331 331 LYS LYS A . n D 4 332 ASP 332 332 332 ASP ASP A . n D 4 333 ARG 333 333 333 ARG ARG A . n D 4 334 SER 334 334 334 SER SER A . n D 4 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG 1 339 339 MG MG A . F 6 NA 1 341 341 NA NA A . G 6 NA 1 342 342 NA NA A . H 7 DCP 1 338 338 DCP DCP A . I 8 HOH 1 27 27 HOH HOH T . I 8 HOH 2 39 39 HOH HOH T . I 8 HOH 3 53 53 HOH HOH T . I 8 HOH 4 63 63 HOH HOH T . J 8 HOH 1 344 344 HOH HOH P . J 8 HOH 2 345 8 HOH HOH P . J 8 HOH 3 346 10 HOH HOH P . J 8 HOH 4 347 28 HOH HOH P . K 8 HOH 1 34 34 HOH HOH D . K 8 HOH 2 346 346 HOH HOH D . L 8 HOH 1 345 345 HOH HOH A . L 8 HOH 2 346 343 HOH HOH A . L 8 HOH 3 347 347 HOH HOH A . L 8 HOH 4 348 1 HOH HOH A . L 8 HOH 5 349 2 HOH HOH A . L 8 HOH 6 350 3 HOH HOH A . L 8 HOH 7 351 4 HOH HOH A . L 8 HOH 8 352 5 HOH HOH A . L 8 HOH 9 353 6 HOH HOH A . L 8 HOH 10 354 7 HOH HOH A . L 8 HOH 11 355 9 HOH HOH A . L 8 HOH 12 356 11 HOH HOH A . L 8 HOH 13 357 12 HOH HOH A . L 8 HOH 14 358 13 HOH HOH A . L 8 HOH 15 359 14 HOH HOH A . L 8 HOH 16 360 15 HOH HOH A . L 8 HOH 17 361 16 HOH HOH A . L 8 HOH 18 362 17 HOH HOH A . L 8 HOH 19 363 18 HOH HOH A . L 8 HOH 20 364 19 HOH HOH A . L 8 HOH 21 365 20 HOH HOH A . L 8 HOH 22 366 21 HOH HOH A . L 8 HOH 23 367 22 HOH HOH A . L 8 HOH 24 368 23 HOH HOH A . L 8 HOH 25 369 24 HOH HOH A . L 8 HOH 26 370 25 HOH HOH A . L 8 HOH 27 371 26 HOH HOH A . L 8 HOH 28 372 29 HOH HOH A . L 8 HOH 29 373 30 HOH HOH A . L 8 HOH 30 374 31 HOH HOH A . L 8 HOH 31 375 32 HOH HOH A . L 8 HOH 32 376 33 HOH HOH A . L 8 HOH 33 377 35 HOH HOH A . L 8 HOH 34 378 36 HOH HOH A . L 8 HOH 35 379 37 HOH HOH A . L 8 HOH 36 380 38 HOH HOH A . L 8 HOH 37 381 40 HOH HOH A . L 8 HOH 38 382 41 HOH HOH A . L 8 HOH 39 383 42 HOH HOH A . L 8 HOH 40 384 43 HOH HOH A . L 8 HOH 41 385 44 HOH HOH A . L 8 HOH 42 386 45 HOH HOH A . L 8 HOH 43 387 46 HOH HOH A . L 8 HOH 44 388 47 HOH HOH A . L 8 HOH 45 389 48 HOH HOH A . L 8 HOH 46 390 49 HOH HOH A . L 8 HOH 47 391 50 HOH HOH A . L 8 HOH 48 392 51 HOH HOH A . L 8 HOH 49 393 52 HOH HOH A . L 8 HOH 50 394 54 HOH HOH A . L 8 HOH 51 395 55 HOH HOH A . L 8 HOH 52 396 56 HOH HOH A . L 8 HOH 53 397 57 HOH HOH A . L 8 HOH 54 398 58 HOH HOH A . L 8 HOH 55 399 59 HOH HOH A . L 8 HOH 56 400 60 HOH HOH A . L 8 HOH 57 401 61 HOH HOH A . L 8 HOH 58 402 62 HOH HOH A . L 8 HOH 59 403 64 HOH HOH A . L 8 HOH 60 404 65 HOH HOH A . L 8 HOH 61 405 66 HOH HOH A . L 8 HOH 62 406 67 HOH HOH A . L 8 HOH 63 407 68 HOH HOH A . L 8 HOH 64 408 69 HOH HOH A . L 8 HOH 65 409 70 HOH HOH A . L 8 HOH 66 410 71 HOH HOH A . L 8 HOH 67 411 72 HOH HOH A . L 8 HOH 68 412 73 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1MQ3 _cell.length_a 50.500 _cell.length_b 79.900 _cell.length_c 55.600 _cell.angle_alpha 90.00 _cell.angle_beta 107.90 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MQ3 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 1MQ3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.55 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '14% PEG 3350, 350 mM sodium acetate and 50 mM imidazole at 18 degrees (C), pH 7.5, temperature 291.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 3350' ? ? ? 1 2 1 'sodium acetate' ? ? ? 1 3 1 imidazole ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MQ3 _reflns.number_all ? _reflns.number_obs 10209 _reflns.percent_possible_obs 97.8 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 20.0 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.51 _reflns.R_free_details ? _reflns.limit_k_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.93 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.9 _reflns_shell.Rmerge_I_obs 0.339 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MQ3 _refine.ls_d_res_high 2.8 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 10177 _refine.ls_number_reflns_obs 10177 _refine.ls_number_reflns_R_free 481 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_all 0.246 _refine.ls_R_factor_obs 0.246 _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.295 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1BPY _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol 10.0 _refine.solvent_model_param_ksol 0.2998 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 22.42 _refine.aniso_B[1][1] -14.235 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] -15.806 _refine.aniso_B[2][2] 18.549 _refine.aniso_B[2][3] 0.0 _refine.aniso_B[3][3] -4.313 _refine.details ;REFINEMENT PARAMETERS FOR 8-OXO-G ARE BASED ON SEVERAL SMALL MOLECULE OBSERVATIONS. DIHEDRAL RESTRAINTS FROM DNA-RNA.PARAM WERE DISABLED TO ALLOW FOR DEVIATIONS FROM CANONICAL B-FORM VALUES, WHICH HAVE BEEN OBSERVED IN HIGH-RESOLUTION DATA FROM SIMILAR POLYMERASE BETA DNA COMPLEXES. ; _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2613 _refine_hist.pdbx_number_atoms_nucleic_acid 632 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 3354 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.10 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.324 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.855 ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.186 ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.869 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN.PARAM ? 'X-RAY DIFFRACTION' 2 DNA-RNA.PARAM ? 'X-RAY DIFFRACTION' 3 WATER.PARAM ? 'X-RAY DIFFRACTION' 4 ION.PARAM ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1MQ3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MQ3 _struct.title 'Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MQ3 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'TRANSFERASE, DNA, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 7 ? I N N 8 ? J N N 8 ? K N N 8 ? L N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DPOB_HUMAN 4 ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; 1 P06746 ? 2 PDB 1MQ3 1 ? ? 1MQ3 ? 3 PDB 1MQ3 2 ? ? 1MQ3 ? 4 PDB 1MQ3 3 ? ? 1MQ3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MQ3 A 1 ? 335 ? P06746 1 ? 335 ? 1 335 2 2 1MQ3 T 1 ? 16 ? 1MQ3 1 ? 16 ? 1 16 3 3 1MQ3 P 1 ? 10 ? 1MQ3 1 ? 10 ? 1 10 4 4 1MQ3 D 1 ? 5 ? 1MQ3 1 ? 5 ? 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN D 12 ? VAL D 29 ? ASN A 12 VAL A 29 1 ? 18 HELX_P HELX_P2 2 ALA D 32 ? TYR D 49 ? ALA A 32 TYR A 49 1 ? 18 HELX_P HELX_P3 3 SER D 55 ? LYS D 61 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 4 THR D 67 ? GLY D 80 ? THR A 67 GLY A 80 1 ? 14 HELX_P HELX_P5 5 LEU D 82 ? ASP D 91 ? LEU A 82 ASP A 91 1 ? 10 HELX_P HELX_P6 6 THR D 93 ? THR D 101 ? THR A 93 THR A 101 1 ? 9 HELX_P HELX_P7 7 GLY D 107 ? ASP D 116 ? GLY A 107 ASP A 116 1 ? 10 HELX_P HELX_P8 8 THR D 121 ? ASN D 128 ? THR A 121 ASN A 128 1 ? 8 HELX_P HELX_P9 9 ASN D 133 ? PHE D 143 ? ASN A 133 PHE A 143 1 ? 11 HELX_P HELX_P10 10 GLY D 144 ? LYS D 148 ? GLY A 144 LYS A 148 5 ? 5 HELX_P HELX_P11 11 ARG D 152 ? ASP D 170 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P12 12 CYS D 178 ? ARG D 183 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P13 13 LYS D 209 ? VAL D 221 ? LYS A 209 VAL A 221 1 ? 13 HELX_P HELX_P14 14 PRO D 261 ? ASP D 263 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P15 15 GLN D 264 ? GLY D 274 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P16 16 SER D 275 ? GLY D 290 ? SER A 275 GLY A 290 1 ? 16 HELX_P HELX_P17 17 SER D 315 ? ILE D 323 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P18 18 GLU D 329 ? ARG D 333 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A 8OG 6 P ? ? T DC 5 T 8OG 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A 8OG 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? T 8OG 6 T DG 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? B DG 9 "O3'" ? ? ? 1_555 B DOC 10 P ? ? P DG 9 P DOC 10 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? B DG 9 OP1 ? ? ? 1_555 F NA . NA ? ? P DG 9 A NA 341 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc2 metalc ? ? J HOH . O ? ? ? 1_555 F NA . NA ? ? P HOH 344 A NA 341 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc3 metalc ? ? C DC 3 OP1 ? ? ? 1_555 G NA . NA ? ? D DC 3 A NA 342 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc4 metalc ? ? K HOH . O ? ? ? 1_555 G NA . NA ? ? D HOH 346 A NA 342 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc5 metalc ? ? D LYS 60 O ? ? ? 1_555 G NA . NA ? ? A LYS 60 A NA 342 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc6 metalc ? ? D LEU 62 O ? ? ? 1_555 G NA . NA ? ? A LEU 62 A NA 342 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc7 metalc ? ? D VAL 65 O ? ? ? 1_555 G NA . NA ? ? A VAL 65 A NA 342 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc8 metalc ? ? D THR 101 O ? ? ? 1_555 F NA . NA ? ? A THR 101 A NA 341 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc9 metalc ? ? D VAL 103 O ? ? ? 1_555 F NA . NA ? ? A VAL 103 A NA 341 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc10 metalc ? ? D ILE 106 O ? ? ? 1_555 F NA . NA ? ? A ILE 106 A NA 341 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc11 metalc ? ? D ASP 190 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 190 A MG 339 1_555 ? ? ? ? ? ? ? 1.828 ? ? metalc12 metalc ? ? D ASP 192 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 339 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc13 metalc ? ? H DCP . O1A ? ? ? 1_555 E MG . MG ? ? A DCP 338 A MG 339 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc14 metalc ? ? H DCP . O2B ? ? ? 1_555 E MG . MG ? ? A DCP 338 A MG 339 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc15 metalc ? ? H DCP . O3A ? ? ? 1_555 E MG . MG ? ? A DCP 338 A MG 339 1_555 ? ? ? ? ? ? ? 3.141 ? ? metalc16 metalc ? ? H DCP . O1G ? ? ? 1_555 E MG . MG ? ? A DCP 338 A MG 339 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 339 A HOH 346 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc18 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 341 A HOH 345 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc19 metalc ? ? G NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 342 A HOH 347 1_555 ? ? ? ? ? ? ? 2.549 ? ? hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DOC 10 N3 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DOC 10 O2 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DOC 10 N4 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog35 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? P HOH 344 ? 1_555 84.4 ? 2 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 166.3 ? 3 O ? J HOH . ? P HOH 344 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 82.0 ? 4 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 86.4 ? 5 O ? J HOH . ? P HOH 344 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 163.6 ? 6 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 107.3 ? 7 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 84.7 ? 8 O ? J HOH . ? P HOH 344 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 77.6 ? 9 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 94.2 ? 10 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 88.1 ? 11 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? L HOH . ? A HOH 345 ? 1_555 99.2 ? 12 O ? J HOH . ? P HOH 344 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? L HOH . ? A HOH 345 ? 1_555 104.1 ? 13 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? L HOH . ? A HOH 345 ? 1_555 82.5 ? 14 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? L HOH . ? A HOH 345 ? 1_555 90.7 ? 15 O ? D ILE 106 ? A ILE 106 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? L HOH . ? A HOH 345 ? 1_555 175.9 ? 16 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? K HOH . ? D HOH 346 ? 1_555 85.6 ? 17 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 174.9 ? 18 O ? K HOH . ? D HOH 346 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 94.8 ? 19 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 98.9 ? 20 O ? K HOH . ? D HOH 346 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 170.6 ? 21 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 81.4 ? 22 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 99.9 ? 23 O ? K HOH . ? D HOH 346 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 91.2 ? 24 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 75.0 ? 25 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 96.1 ? 26 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? L HOH . ? A HOH 347 ? 1_555 91.1 ? 27 O ? K HOH . ? D HOH 346 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? L HOH . ? A HOH 347 ? 1_555 92.8 ? 28 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? L HOH . ? A HOH 347 ? 1_555 94.0 ? 29 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? L HOH . ? A HOH 347 ? 1_555 78.9 ? 30 O ? D VAL 65 ? A VAL 65 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? L HOH . ? A HOH 347 ? 1_555 168.5 ? 31 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 89.6 ? 32 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1A ? H DCP . ? A DCP 338 ? 1_555 81.9 ? 33 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1A ? H DCP . ? A DCP 338 ? 1_555 90.7 ? 34 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? H DCP . ? A DCP 338 ? 1_555 173.5 ? 35 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? H DCP . ? A DCP 338 ? 1_555 94.5 ? 36 O1A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? H DCP . ? A DCP 338 ? 1_555 93.0 ? 37 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O3A ? H DCP . ? A DCP 338 ? 1_555 123.6 ? 38 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O3A ? H DCP . ? A DCP 338 ? 1_555 114.5 ? 39 O1A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O3A ? H DCP . ? A DCP 338 ? 1_555 49.9 ? 40 O2B ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O3A ? H DCP . ? A DCP 338 ? 1_555 50.0 ? 41 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? H DCP . ? A DCP 338 ? 1_555 93.2 ? 42 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? H DCP . ? A DCP 338 ? 1_555 174.6 ? 43 O1A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? H DCP . ? A DCP 338 ? 1_555 94.2 ? 44 O2B ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? H DCP . ? A DCP 338 ? 1_555 83.1 ? 45 O3A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? H DCP . ? A DCP 338 ? 1_555 67.5 ? 46 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 90.9 ? 47 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 91.3 ? 48 O1A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 172.5 ? 49 O2B ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 94.1 ? 50 O3A ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 134.9 ? 51 O1G ? H DCP . ? A DCP 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? L HOH . ? A HOH 346 ? 1_555 84.1 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE D 150 ? PRO D 151 ? ILE A 150 PRO A 151 A 2 SER D 187 ? SER D 188 ? SER A 187 SER A 188 B 1 ILE D 174 ? VAL D 177 ? ILE A 174 VAL A 177 B 2 MET D 191 ? THR D 196 ? MET A 191 THR A 196 B 3 ARG D 253 ? LEU D 259 ? ARG A 253 LEU A 259 B 4 LYS D 234 ? CYS D 239 ? LYS A 234 CYS A 239 B 5 ILE D 224 ? LYS D 230 ? ILE A 224 LYS A 230 C 1 PHE D 200 ? THR D 201 ? PHE A 200 THR A 201 C 2 SER D 204 ? THR D 205 ? SER A 204 THR A 205 D 1 PHE D 291 ? ILE D 293 ? PHE A 291 ILE A 293 D 2 ILE D 298 ? PRO D 300 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE D 150 ? N ILE A 150 O SER D 188 ? O SER A 188 B 1 2 N THR D 176 ? N THR A 176 O LEU D 194 ? O LEU A 194 B 2 3 N LEU D 195 ? N LEU A 195 O ARG D 258 ? O ARG A 258 B 3 4 O ARG D 253 ? O ARG A 253 N CYS D 239 ? N CYS A 239 B 4 5 O VAL D 238 ? O VAL A 238 N ASP D 226 ? N ASP A 226 C 1 2 N THR D 201 ? N THR A 201 O SER D 204 ? O SER A 204 D 1 2 N THR D 292 ? N THR A 292 O ARG D 299 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 339 ? 4 'BINDING SITE FOR RESIDUE MG A 339' AC2 Software A NA 341 ? 6 'BINDING SITE FOR RESIDUE NA A 341' AC3 Software A NA 342 ? 6 'BINDING SITE FOR RESIDUE NA A 342' AC4 Software A DCP 338 ? 20 'BINDING SITE FOR RESIDUE DCP A 338' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP D 190 ? ASP A 190 . ? 1_555 ? 2 AC1 4 ASP D 192 ? ASP A 192 . ? 1_555 ? 3 AC1 4 DCP H . ? DCP A 338 . ? 1_555 ? 4 AC1 4 HOH L . ? HOH A 346 . ? 1_555 ? 5 AC2 6 THR D 101 ? THR A 101 . ? 1_555 ? 6 AC2 6 VAL D 103 ? VAL A 103 . ? 1_555 ? 7 AC2 6 ILE D 106 ? ILE A 106 . ? 1_555 ? 8 AC2 6 HOH L . ? HOH A 345 . ? 1_555 ? 9 AC2 6 DG B 9 ? DG P 9 . ? 1_555 ? 10 AC2 6 HOH J . ? HOH P 344 . ? 1_555 ? 11 AC3 6 LYS D 60 ? LYS A 60 . ? 1_555 ? 12 AC3 6 LEU D 62 ? LEU A 62 . ? 1_555 ? 13 AC3 6 VAL D 65 ? VAL A 65 . ? 1_555 ? 14 AC3 6 HOH L . ? HOH A 347 . ? 1_555 ? 15 AC3 6 DC C 3 ? DC D 3 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH D 346 . ? 1_555 ? 17 AC4 20 ARG D 149 ? ARG A 149 . ? 1_555 ? 18 AC4 20 GLY D 179 ? GLY A 179 . ? 1_555 ? 19 AC4 20 SER D 180 ? SER A 180 . ? 1_555 ? 20 AC4 20 ARG D 183 ? ARG A 183 . ? 1_555 ? 21 AC4 20 GLY D 189 ? GLY A 189 . ? 1_555 ? 22 AC4 20 ASP D 190 ? ASP A 190 . ? 1_555 ? 23 AC4 20 ASP D 192 ? ASP A 192 . ? 1_555 ? 24 AC4 20 TYR D 271 ? TYR A 271 . ? 1_555 ? 25 AC4 20 PHE D 272 ? PHE A 272 . ? 1_555 ? 26 AC4 20 THR D 273 ? THR A 273 . ? 1_555 ? 27 AC4 20 GLY D 274 ? GLY A 274 . ? 1_555 ? 28 AC4 20 ASP D 276 ? ASP A 276 . ? 1_555 ? 29 AC4 20 ASN D 279 ? ASN A 279 . ? 1_555 ? 30 AC4 20 MG E . ? MG A 339 . ? 1_555 ? 31 AC4 20 HOH L . ? HOH A 346 . ? 1_555 ? 32 AC4 20 HOH L . ? HOH A 354 . ? 1_555 ? 33 AC4 20 HOH L . ? HOH A 389 . ? 1_555 ? 34 AC4 20 DOC B 10 ? DOC P 10 . ? 1_555 ? 35 AC4 20 8OG A 6 ? 8OG T 6 . ? 1_555 ? 36 AC4 20 DG A 7 ? DG T 7 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.521 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 29 ? ? -76.31 -71.62 2 1 PRO A 50 ? ? -80.24 31.12 3 1 SER A 55 ? ? -176.49 146.59 4 1 ASP A 91 ? ? -49.20 102.31 5 1 PHE A 146 ? ? -57.00 -2.09 6 1 CYS A 178 ? ? -82.49 -129.06 7 1 SER A 202 ? ? -58.71 7.63 8 1 GLU A 203 ? ? -159.87 0.40 9 1 LYS A 209 ? ? -96.46 40.91 10 1 LEU A 228 ? ? -69.69 -91.62 11 1 LYS A 230 ? ? -160.17 106.32 12 1 LYS A 244 ? ? -82.33 -143.63 13 1 ASP A 246 ? ? 66.62 -13.51 14 1 PHE A 272 ? ? -57.41 -6.51 15 1 LEU A 301 ? ? -94.01 56.24 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 8OG 6 T 8OG 6 ? DG ? 2 B DOC 10 P DOC 10 ? DC "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? D MET 1 2 1 Y 1 A SER 2 ? D SER 2 3 1 Y 1 A LYS 3 ? D LYS 3 4 1 Y 1 A ARG 4 ? D ARG 4 5 1 Y 1 A LYS 5 ? D LYS 5 6 1 Y 1 A ALA 6 ? D ALA 6 7 1 Y 1 A PRO 7 ? D PRO 7 8 1 Y 1 A GLN 8 ? D GLN 8 9 1 Y 1 A GLU 9 ? D GLU 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 DA OP3 O N N 126 DA P P N N 127 DA OP1 O N N 128 DA OP2 O N N 129 DA "O5'" O N N 130 DA "C5'" C N N 131 DA "C4'" C N R 132 DA "O4'" O N N 133 DA "C3'" C N S 134 DA "O3'" O N N 135 DA "C2'" C N N 136 DA "C1'" C N R 137 DA N9 N Y N 138 DA C8 C Y N 139 DA N7 N Y N 140 DA C5 C Y N 141 DA C6 C Y N 142 DA N6 N N N 143 DA N1 N Y N 144 DA C2 C Y N 145 DA N3 N Y N 146 DA C4 C Y N 147 DA HOP3 H N N 148 DA HOP2 H N N 149 DA "H5'" H N N 150 DA "H5''" H N N 151 DA "H4'" H N N 152 DA "H3'" H N N 153 DA "HO3'" H N N 154 DA "H2'" H N N 155 DA "H2''" H N N 156 DA "H1'" H N N 157 DA H8 H N N 158 DA H61 H N N 159 DA H62 H N N 160 DA H2 H N N 161 DC OP3 O N N 162 DC P P N N 163 DC OP1 O N N 164 DC OP2 O N N 165 DC "O5'" O N N 166 DC "C5'" C N N 167 DC "C4'" C N R 168 DC "O4'" O N N 169 DC "C3'" C N S 170 DC "O3'" O N N 171 DC "C2'" C N N 172 DC "C1'" C N R 173 DC N1 N N N 174 DC C2 C N N 175 DC O2 O N N 176 DC N3 N N N 177 DC C4 C N N 178 DC N4 N N N 179 DC C5 C N N 180 DC C6 C N N 181 DC HOP3 H N N 182 DC HOP2 H N N 183 DC "H5'" H N N 184 DC "H5''" H N N 185 DC "H4'" H N N 186 DC "H3'" H N N 187 DC "HO3'" H N N 188 DC "H2'" H N N 189 DC "H2''" H N N 190 DC "H1'" H N N 191 DC H41 H N N 192 DC H42 H N N 193 DC H5 H N N 194 DC H6 H N N 195 DCP N1 N N N 196 DCP C2 C N N 197 DCP N3 N N N 198 DCP C4 C N N 199 DCP C5 C N N 200 DCP C6 C N N 201 DCP O2 O N N 202 DCP N4 N N N 203 DCP "C1'" C N R 204 DCP "C2'" C N N 205 DCP "C3'" C N S 206 DCP "C4'" C N R 207 DCP "O4'" O N N 208 DCP "O3'" O N N 209 DCP "C5'" C N N 210 DCP "O5'" O N N 211 DCP PA P N R 212 DCP O1A O N N 213 DCP O2A O N N 214 DCP O3A O N N 215 DCP PB P N S 216 DCP O1B O N N 217 DCP O2B O N N 218 DCP O3B O N N 219 DCP PG P N N 220 DCP O1G O N N 221 DCP O2G O N N 222 DCP O3G O N N 223 DCP H5 H N N 224 DCP H6 H N N 225 DCP HN41 H N N 226 DCP HN42 H N N 227 DCP "H1'" H N N 228 DCP "H2'1" H N N 229 DCP "H2'2" H N N 230 DCP "H3'" H N N 231 DCP "H4'" H N N 232 DCP "HO3'" H N N 233 DCP "H5'1" H N N 234 DCP "H5'2" H N N 235 DCP HOA2 H N N 236 DCP HOB2 H N N 237 DCP HOG2 H N N 238 DCP HOG3 H N N 239 DG OP3 O N N 240 DG P P N N 241 DG OP1 O N N 242 DG OP2 O N N 243 DG "O5'" O N N 244 DG "C5'" C N N 245 DG "C4'" C N R 246 DG "O4'" O N N 247 DG "C3'" C N S 248 DG "O3'" O N N 249 DG "C2'" C N N 250 DG "C1'" C N R 251 DG N9 N Y N 252 DG C8 C Y N 253 DG N7 N Y N 254 DG C5 C Y N 255 DG C6 C N N 256 DG O6 O N N 257 DG N1 N N N 258 DG C2 C N N 259 DG N2 N N N 260 DG N3 N N N 261 DG C4 C Y N 262 DG HOP3 H N N 263 DG HOP2 H N N 264 DG "H5'" H N N 265 DG "H5''" H N N 266 DG "H4'" H N N 267 DG "H3'" H N N 268 DG "HO3'" H N N 269 DG "H2'" H N N 270 DG "H2''" H N N 271 DG "H1'" H N N 272 DG H8 H N N 273 DG H1 H N N 274 DG H21 H N N 275 DG H22 H N N 276 DOC N1 N N N 277 DOC C2 C N N 278 DOC N3 N N N 279 DOC C4 C N N 280 DOC C5 C N N 281 DOC C6 C N N 282 DOC O2 O N N 283 DOC N4 N N N 284 DOC "C1'" C N R 285 DOC "C2'" C N N 286 DOC "C3'" C N N 287 DOC "C4'" C N S 288 DOC "O4'" O N N 289 DOC "C5'" C N N 290 DOC "O5'" O N N 291 DOC P P N N 292 DOC OP1 O N N 293 DOC OP2 O N N 294 DOC OP3 O N N 295 DOC H5 H N N 296 DOC H6 H N N 297 DOC HN41 H N N 298 DOC HN42 H N N 299 DOC "H1'" H N N 300 DOC "H2'" H N N 301 DOC "H2''" H N N 302 DOC "H3'1" H N N 303 DOC "H3'2" H N N 304 DOC "H4'" H N N 305 DOC "H5'" H N N 306 DOC "H5''" H N N 307 DOC HOP2 H N N 308 DOC HOP3 H N N 309 DT OP3 O N N 310 DT P P N N 311 DT OP1 O N N 312 DT OP2 O N N 313 DT "O5'" O N N 314 DT "C5'" C N N 315 DT "C4'" C N R 316 DT "O4'" O N N 317 DT "C3'" C N S 318 DT "O3'" O N N 319 DT "C2'" C N N 320 DT "C1'" C N R 321 DT N1 N N N 322 DT C2 C N N 323 DT O2 O N N 324 DT N3 N N N 325 DT C4 C N N 326 DT O4 O N N 327 DT C5 C N N 328 DT C7 C N N 329 DT C6 C N N 330 DT HOP3 H N N 331 DT HOP2 H N N 332 DT "H5'" H N N 333 DT "H5''" H N N 334 DT "H4'" H N N 335 DT "H3'" H N N 336 DT "HO3'" H N N 337 DT "H2'" H N N 338 DT "H2''" H N N 339 DT "H1'" H N N 340 DT H3 H N N 341 DT H71 H N N 342 DT H72 H N N 343 DT H73 H N N 344 DT H6 H N N 345 GLN N N N N 346 GLN CA C N S 347 GLN C C N N 348 GLN O O N N 349 GLN CB C N N 350 GLN CG C N N 351 GLN CD C N N 352 GLN OE1 O N N 353 GLN NE2 N N N 354 GLN OXT O N N 355 GLN H H N N 356 GLN H2 H N N 357 GLN HA H N N 358 GLN HB2 H N N 359 GLN HB3 H N N 360 GLN HG2 H N N 361 GLN HG3 H N N 362 GLN HE21 H N N 363 GLN HE22 H N N 364 GLN HXT H N N 365 GLU N N N N 366 GLU CA C N S 367 GLU C C N N 368 GLU O O N N 369 GLU CB C N N 370 GLU CG C N N 371 GLU CD C N N 372 GLU OE1 O N N 373 GLU OE2 O N N 374 GLU OXT O N N 375 GLU H H N N 376 GLU H2 H N N 377 GLU HA H N N 378 GLU HB2 H N N 379 GLU HB3 H N N 380 GLU HG2 H N N 381 GLU HG3 H N N 382 GLU HE2 H N N 383 GLU HXT H N N 384 GLY N N N N 385 GLY CA C N N 386 GLY C C N N 387 GLY O O N N 388 GLY OXT O N N 389 GLY H H N N 390 GLY H2 H N N 391 GLY HA2 H N N 392 GLY HA3 H N N 393 GLY HXT H N N 394 HIS N N N N 395 HIS CA C N S 396 HIS C C N N 397 HIS O O N N 398 HIS CB C N N 399 HIS CG C Y N 400 HIS ND1 N Y N 401 HIS CD2 C Y N 402 HIS CE1 C Y N 403 HIS NE2 N Y N 404 HIS OXT O N N 405 HIS H H N N 406 HIS H2 H N N 407 HIS HA H N N 408 HIS HB2 H N N 409 HIS HB3 H N N 410 HIS HD1 H N N 411 HIS HD2 H N N 412 HIS HE1 H N N 413 HIS HE2 H N N 414 HIS HXT H N N 415 HOH O O N N 416 HOH H1 H N N 417 HOH H2 H N N 418 ILE N N N N 419 ILE CA C N S 420 ILE C C N N 421 ILE O O N N 422 ILE CB C N S 423 ILE CG1 C N N 424 ILE CG2 C N N 425 ILE CD1 C N N 426 ILE OXT O N N 427 ILE H H N N 428 ILE H2 H N N 429 ILE HA H N N 430 ILE HB H N N 431 ILE HG12 H N N 432 ILE HG13 H N N 433 ILE HG21 H N N 434 ILE HG22 H N N 435 ILE HG23 H N N 436 ILE HD11 H N N 437 ILE HD12 H N N 438 ILE HD13 H N N 439 ILE HXT H N N 440 LEU N N N N 441 LEU CA C N S 442 LEU C C N N 443 LEU O O N N 444 LEU CB C N N 445 LEU CG C N N 446 LEU CD1 C N N 447 LEU CD2 C N N 448 LEU OXT O N N 449 LEU H H N N 450 LEU H2 H N N 451 LEU HA H N N 452 LEU HB2 H N N 453 LEU HB3 H N N 454 LEU HG H N N 455 LEU HD11 H N N 456 LEU HD12 H N N 457 LEU HD13 H N N 458 LEU HD21 H N N 459 LEU HD22 H N N 460 LEU HD23 H N N 461 LEU HXT H N N 462 LYS N N N N 463 LYS CA C N S 464 LYS C C N N 465 LYS O O N N 466 LYS CB C N N 467 LYS CG C N N 468 LYS CD C N N 469 LYS CE C N N 470 LYS NZ N N N 471 LYS OXT O N N 472 LYS H H N N 473 LYS H2 H N N 474 LYS HA H N N 475 LYS HB2 H N N 476 LYS HB3 H N N 477 LYS HG2 H N N 478 LYS HG3 H N N 479 LYS HD2 H N N 480 LYS HD3 H N N 481 LYS HE2 H N N 482 LYS HE3 H N N 483 LYS HZ1 H N N 484 LYS HZ2 H N N 485 LYS HZ3 H N N 486 LYS HXT H N N 487 MET N N N N 488 MET CA C N S 489 MET C C N N 490 MET O O N N 491 MET CB C N N 492 MET CG C N N 493 MET SD S N N 494 MET CE C N N 495 MET OXT O N N 496 MET H H N N 497 MET H2 H N N 498 MET HA H N N 499 MET HB2 H N N 500 MET HB3 H N N 501 MET HG2 H N N 502 MET HG3 H N N 503 MET HE1 H N N 504 MET HE2 H N N 505 MET HE3 H N N 506 MET HXT H N N 507 MG MG MG N N 508 NA NA NA N N 509 PHE N N N N 510 PHE CA C N S 511 PHE C C N N 512 PHE O O N N 513 PHE CB C N N 514 PHE CG C Y N 515 PHE CD1 C Y N 516 PHE CD2 C Y N 517 PHE CE1 C Y N 518 PHE CE2 C Y N 519 PHE CZ C Y N 520 PHE OXT O N N 521 PHE H H N N 522 PHE H2 H N N 523 PHE HA H N N 524 PHE HB2 H N N 525 PHE HB3 H N N 526 PHE HD1 H N N 527 PHE HD2 H N N 528 PHE HE1 H N N 529 PHE HE2 H N N 530 PHE HZ H N N 531 PHE HXT H N N 532 PRO N N N N 533 PRO CA C N S 534 PRO C C N N 535 PRO O O N N 536 PRO CB C N N 537 PRO CG C N N 538 PRO CD C N N 539 PRO OXT O N N 540 PRO H H N N 541 PRO HA H N N 542 PRO HB2 H N N 543 PRO HB3 H N N 544 PRO HG2 H N N 545 PRO HG3 H N N 546 PRO HD2 H N N 547 PRO HD3 H N N 548 PRO HXT H N N 549 SER N N N N 550 SER CA C N S 551 SER C C N N 552 SER O O N N 553 SER CB C N N 554 SER OG O N N 555 SER OXT O N N 556 SER H H N N 557 SER H2 H N N 558 SER HA H N N 559 SER HB2 H N N 560 SER HB3 H N N 561 SER HG H N N 562 SER HXT H N N 563 THR N N N N 564 THR CA C N S 565 THR C C N N 566 THR O O N N 567 THR CB C N R 568 THR OG1 O N N 569 THR CG2 C N N 570 THR OXT O N N 571 THR H H N N 572 THR H2 H N N 573 THR HA H N N 574 THR HB H N N 575 THR HG1 H N N 576 THR HG21 H N N 577 THR HG22 H N N 578 THR HG23 H N N 579 THR HXT H N N 580 TRP N N N N 581 TRP CA C N S 582 TRP C C N N 583 TRP O O N N 584 TRP CB C N N 585 TRP CG C Y N 586 TRP CD1 C Y N 587 TRP CD2 C Y N 588 TRP NE1 N Y N 589 TRP CE2 C Y N 590 TRP CE3 C Y N 591 TRP CZ2 C Y N 592 TRP CZ3 C Y N 593 TRP CH2 C Y N 594 TRP OXT O N N 595 TRP H H N N 596 TRP H2 H N N 597 TRP HA H N N 598 TRP HB2 H N N 599 TRP HB3 H N N 600 TRP HD1 H N N 601 TRP HE1 H N N 602 TRP HE3 H N N 603 TRP HZ2 H N N 604 TRP HZ3 H N N 605 TRP HH2 H N N 606 TRP HXT H N N 607 TYR N N N N 608 TYR CA C N S 609 TYR C C N N 610 TYR O O N N 611 TYR CB C N N 612 TYR CG C Y N 613 TYR CD1 C Y N 614 TYR CD2 C Y N 615 TYR CE1 C Y N 616 TYR CE2 C Y N 617 TYR CZ C Y N 618 TYR OH O N N 619 TYR OXT O N N 620 TYR H H N N 621 TYR H2 H N N 622 TYR HA H N N 623 TYR HB2 H N N 624 TYR HB3 H N N 625 TYR HD1 H N N 626 TYR HD2 H N N 627 TYR HE1 H N N 628 TYR HE2 H N N 629 TYR HH H N N 630 TYR HXT H N N 631 VAL N N N N 632 VAL CA C N S 633 VAL C C N N 634 VAL O O N N 635 VAL CB C N N 636 VAL CG1 C N N 637 VAL CG2 C N N 638 VAL OXT O N N 639 VAL H H N N 640 VAL H2 H N N 641 VAL HA H N N 642 VAL HB H N N 643 VAL HG11 H N N 644 VAL HG12 H N N 645 VAL HG13 H N N 646 VAL HG21 H N N 647 VAL HG22 H N N 648 VAL HG23 H N N 649 VAL HXT H N N 650 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 DA OP3 P sing N N 123 DA OP3 HOP3 sing N N 124 DA P OP1 doub N N 125 DA P OP2 sing N N 126 DA P "O5'" sing N N 127 DA OP2 HOP2 sing N N 128 DA "O5'" "C5'" sing N N 129 DA "C5'" "C4'" sing N N 130 DA "C5'" "H5'" sing N N 131 DA "C5'" "H5''" sing N N 132 DA "C4'" "O4'" sing N N 133 DA "C4'" "C3'" sing N N 134 DA "C4'" "H4'" sing N N 135 DA "O4'" "C1'" sing N N 136 DA "C3'" "O3'" sing N N 137 DA "C3'" "C2'" sing N N 138 DA "C3'" "H3'" sing N N 139 DA "O3'" "HO3'" sing N N 140 DA "C2'" "C1'" sing N N 141 DA "C2'" "H2'" sing N N 142 DA "C2'" "H2''" sing N N 143 DA "C1'" N9 sing N N 144 DA "C1'" "H1'" sing N N 145 DA N9 C8 sing Y N 146 DA N9 C4 sing Y N 147 DA C8 N7 doub Y N 148 DA C8 H8 sing N N 149 DA N7 C5 sing Y N 150 DA C5 C6 sing Y N 151 DA C5 C4 doub Y N 152 DA C6 N6 sing N N 153 DA C6 N1 doub Y N 154 DA N6 H61 sing N N 155 DA N6 H62 sing N N 156 DA N1 C2 sing Y N 157 DA C2 N3 doub Y N 158 DA C2 H2 sing N N 159 DA N3 C4 sing Y N 160 DC OP3 P sing N N 161 DC OP3 HOP3 sing N N 162 DC P OP1 doub N N 163 DC P OP2 sing N N 164 DC P "O5'" sing N N 165 DC OP2 HOP2 sing N N 166 DC "O5'" "C5'" sing N N 167 DC "C5'" "C4'" sing N N 168 DC "C5'" "H5'" sing N N 169 DC "C5'" "H5''" sing N N 170 DC "C4'" "O4'" sing N N 171 DC "C4'" "C3'" sing N N 172 DC "C4'" "H4'" sing N N 173 DC "O4'" "C1'" sing N N 174 DC "C3'" "O3'" sing N N 175 DC "C3'" "C2'" sing N N 176 DC "C3'" "H3'" sing N N 177 DC "O3'" "HO3'" sing N N 178 DC "C2'" "C1'" sing N N 179 DC "C2'" "H2'" sing N N 180 DC "C2'" "H2''" sing N N 181 DC "C1'" N1 sing N N 182 DC "C1'" "H1'" sing N N 183 DC N1 C2 sing N N 184 DC N1 C6 sing N N 185 DC C2 O2 doub N N 186 DC C2 N3 sing N N 187 DC N3 C4 doub N N 188 DC C4 N4 sing N N 189 DC C4 C5 sing N N 190 DC N4 H41 sing N N 191 DC N4 H42 sing N N 192 DC C5 C6 doub N N 193 DC C5 H5 sing N N 194 DC C6 H6 sing N N 195 DCP N1 C2 sing N N 196 DCP N1 C6 sing N N 197 DCP N1 "C1'" sing N N 198 DCP C2 N3 sing N N 199 DCP C2 O2 doub N N 200 DCP N3 C4 doub N N 201 DCP C4 C5 sing N N 202 DCP C4 N4 sing N N 203 DCP C5 C6 doub N N 204 DCP C5 H5 sing N N 205 DCP C6 H6 sing N N 206 DCP N4 HN41 sing N N 207 DCP N4 HN42 sing N N 208 DCP "C1'" "C2'" sing N N 209 DCP "C1'" "O4'" sing N N 210 DCP "C1'" "H1'" sing N N 211 DCP "C2'" "C3'" sing N N 212 DCP "C2'" "H2'1" sing N N 213 DCP "C2'" "H2'2" sing N N 214 DCP "C3'" "C4'" sing N N 215 DCP "C3'" "O3'" sing N N 216 DCP "C3'" "H3'" sing N N 217 DCP "C4'" "O4'" sing N N 218 DCP "C4'" "C5'" sing N N 219 DCP "C4'" "H4'" sing N N 220 DCP "O3'" "HO3'" sing N N 221 DCP "C5'" "O5'" sing N N 222 DCP "C5'" "H5'1" sing N N 223 DCP "C5'" "H5'2" sing N N 224 DCP "O5'" PA sing N N 225 DCP PA O1A doub N N 226 DCP PA O2A sing N N 227 DCP PA O3A sing N N 228 DCP O2A HOA2 sing N N 229 DCP O3A PB sing N N 230 DCP PB O1B doub N N 231 DCP PB O2B sing N N 232 DCP PB O3B sing N N 233 DCP O2B HOB2 sing N N 234 DCP O3B PG sing N N 235 DCP PG O1G doub N N 236 DCP PG O2G sing N N 237 DCP PG O3G sing N N 238 DCP O2G HOG2 sing N N 239 DCP O3G HOG3 sing N N 240 DG OP3 P sing N N 241 DG OP3 HOP3 sing N N 242 DG P OP1 doub N N 243 DG P OP2 sing N N 244 DG P "O5'" sing N N 245 DG OP2 HOP2 sing N N 246 DG "O5'" "C5'" sing N N 247 DG "C5'" "C4'" sing N N 248 DG "C5'" "H5'" sing N N 249 DG "C5'" "H5''" sing N N 250 DG "C4'" "O4'" sing N N 251 DG "C4'" "C3'" sing N N 252 DG "C4'" "H4'" sing N N 253 DG "O4'" "C1'" sing N N 254 DG "C3'" "O3'" sing N N 255 DG "C3'" "C2'" sing N N 256 DG "C3'" "H3'" sing N N 257 DG "O3'" "HO3'" sing N N 258 DG "C2'" "C1'" sing N N 259 DG "C2'" "H2'" sing N N 260 DG "C2'" "H2''" sing N N 261 DG "C1'" N9 sing N N 262 DG "C1'" "H1'" sing N N 263 DG N9 C8 sing Y N 264 DG N9 C4 sing Y N 265 DG C8 N7 doub Y N 266 DG C8 H8 sing N N 267 DG N7 C5 sing Y N 268 DG C5 C6 sing N N 269 DG C5 C4 doub Y N 270 DG C6 O6 doub N N 271 DG C6 N1 sing N N 272 DG N1 C2 sing N N 273 DG N1 H1 sing N N 274 DG C2 N2 sing N N 275 DG C2 N3 doub N N 276 DG N2 H21 sing N N 277 DG N2 H22 sing N N 278 DG N3 C4 sing N N 279 DOC N1 C2 sing N N 280 DOC N1 C6 sing N N 281 DOC N1 "C1'" sing N N 282 DOC C2 N3 sing N N 283 DOC C2 O2 doub N N 284 DOC N3 C4 doub N N 285 DOC C4 C5 sing N N 286 DOC C4 N4 sing N N 287 DOC C5 C6 doub N N 288 DOC C5 H5 sing N N 289 DOC C6 H6 sing N N 290 DOC N4 HN41 sing N N 291 DOC N4 HN42 sing N N 292 DOC "C1'" "C2'" sing N N 293 DOC "C1'" "O4'" sing N N 294 DOC "C1'" "H1'" sing N N 295 DOC "C2'" "C3'" sing N N 296 DOC "C2'" "H2'" sing N N 297 DOC "C2'" "H2''" sing N N 298 DOC "C3'" "C4'" sing N N 299 DOC "C3'" "H3'1" sing N N 300 DOC "C3'" "H3'2" sing N N 301 DOC "C4'" "O4'" sing N N 302 DOC "C4'" "C5'" sing N N 303 DOC "C4'" "H4'" sing N N 304 DOC "C5'" "O5'" sing N N 305 DOC "C5'" "H5'" sing N N 306 DOC "C5'" "H5''" sing N N 307 DOC "O5'" P sing N N 308 DOC P OP1 doub N N 309 DOC P OP2 sing N N 310 DOC P OP3 sing N N 311 DOC OP2 HOP2 sing N N 312 DOC OP3 HOP3 sing N N 313 DT OP3 P sing N N 314 DT OP3 HOP3 sing N N 315 DT P OP1 doub N N 316 DT P OP2 sing N N 317 DT P "O5'" sing N N 318 DT OP2 HOP2 sing N N 319 DT "O5'" "C5'" sing N N 320 DT "C5'" "C4'" sing N N 321 DT "C5'" "H5'" sing N N 322 DT "C5'" "H5''" sing N N 323 DT "C4'" "O4'" sing N N 324 DT "C4'" "C3'" sing N N 325 DT "C4'" "H4'" sing N N 326 DT "O4'" "C1'" sing N N 327 DT "C3'" "O3'" sing N N 328 DT "C3'" "C2'" sing N N 329 DT "C3'" "H3'" sing N N 330 DT "O3'" "HO3'" sing N N 331 DT "C2'" "C1'" sing N N 332 DT "C2'" "H2'" sing N N 333 DT "C2'" "H2''" sing N N 334 DT "C1'" N1 sing N N 335 DT "C1'" "H1'" sing N N 336 DT N1 C2 sing N N 337 DT N1 C6 sing N N 338 DT C2 O2 doub N N 339 DT C2 N3 sing N N 340 DT N3 C4 sing N N 341 DT N3 H3 sing N N 342 DT C4 O4 doub N N 343 DT C4 C5 sing N N 344 DT C5 C7 sing N N 345 DT C5 C6 doub N N 346 DT C7 H71 sing N N 347 DT C7 H72 sing N N 348 DT C7 H73 sing N N 349 DT C6 H6 sing N N 350 GLN N CA sing N N 351 GLN N H sing N N 352 GLN N H2 sing N N 353 GLN CA C sing N N 354 GLN CA CB sing N N 355 GLN CA HA sing N N 356 GLN C O doub N N 357 GLN C OXT sing N N 358 GLN CB CG sing N N 359 GLN CB HB2 sing N N 360 GLN CB HB3 sing N N 361 GLN CG CD sing N N 362 GLN CG HG2 sing N N 363 GLN CG HG3 sing N N 364 GLN CD OE1 doub N N 365 GLN CD NE2 sing N N 366 GLN NE2 HE21 sing N N 367 GLN NE2 HE22 sing N N 368 GLN OXT HXT sing N N 369 GLU N CA sing N N 370 GLU N H sing N N 371 GLU N H2 sing N N 372 GLU CA C sing N N 373 GLU CA CB sing N N 374 GLU CA HA sing N N 375 GLU C O doub N N 376 GLU C OXT sing N N 377 GLU CB CG sing N N 378 GLU CB HB2 sing N N 379 GLU CB HB3 sing N N 380 GLU CG CD sing N N 381 GLU CG HG2 sing N N 382 GLU CG HG3 sing N N 383 GLU CD OE1 doub N N 384 GLU CD OE2 sing N N 385 GLU OE2 HE2 sing N N 386 GLU OXT HXT sing N N 387 GLY N CA sing N N 388 GLY N H sing N N 389 GLY N H2 sing N N 390 GLY CA C sing N N 391 GLY CA HA2 sing N N 392 GLY CA HA3 sing N N 393 GLY C O doub N N 394 GLY C OXT sing N N 395 GLY OXT HXT sing N N 396 HIS N CA sing N N 397 HIS N H sing N N 398 HIS N H2 sing N N 399 HIS CA C sing N N 400 HIS CA CB sing N N 401 HIS CA HA sing N N 402 HIS C O doub N N 403 HIS C OXT sing N N 404 HIS CB CG sing N N 405 HIS CB HB2 sing N N 406 HIS CB HB3 sing N N 407 HIS CG ND1 sing Y N 408 HIS CG CD2 doub Y N 409 HIS ND1 CE1 doub Y N 410 HIS ND1 HD1 sing N N 411 HIS CD2 NE2 sing Y N 412 HIS CD2 HD2 sing N N 413 HIS CE1 NE2 sing Y N 414 HIS CE1 HE1 sing N N 415 HIS NE2 HE2 sing N N 416 HIS OXT HXT sing N N 417 HOH O H1 sing N N 418 HOH O H2 sing N N 419 ILE N CA sing N N 420 ILE N H sing N N 421 ILE N H2 sing N N 422 ILE CA C sing N N 423 ILE CA CB sing N N 424 ILE CA HA sing N N 425 ILE C O doub N N 426 ILE C OXT sing N N 427 ILE CB CG1 sing N N 428 ILE CB CG2 sing N N 429 ILE CB HB sing N N 430 ILE CG1 CD1 sing N N 431 ILE CG1 HG12 sing N N 432 ILE CG1 HG13 sing N N 433 ILE CG2 HG21 sing N N 434 ILE CG2 HG22 sing N N 435 ILE CG2 HG23 sing N N 436 ILE CD1 HD11 sing N N 437 ILE CD1 HD12 sing N N 438 ILE CD1 HD13 sing N N 439 ILE OXT HXT sing N N 440 LEU N CA sing N N 441 LEU N H sing N N 442 LEU N H2 sing N N 443 LEU CA C sing N N 444 LEU CA CB sing N N 445 LEU CA HA sing N N 446 LEU C O doub N N 447 LEU C OXT sing N N 448 LEU CB CG sing N N 449 LEU CB HB2 sing N N 450 LEU CB HB3 sing N N 451 LEU CG CD1 sing N N 452 LEU CG CD2 sing N N 453 LEU CG HG sing N N 454 LEU CD1 HD11 sing N N 455 LEU CD1 HD12 sing N N 456 LEU CD1 HD13 sing N N 457 LEU CD2 HD21 sing N N 458 LEU CD2 HD22 sing N N 459 LEU CD2 HD23 sing N N 460 LEU OXT HXT sing N N 461 LYS N CA sing N N 462 LYS N H sing N N 463 LYS N H2 sing N N 464 LYS CA C sing N N 465 LYS CA CB sing N N 466 LYS CA HA sing N N 467 LYS C O doub N N 468 LYS C OXT sing N N 469 LYS CB CG sing N N 470 LYS CB HB2 sing N N 471 LYS CB HB3 sing N N 472 LYS CG CD sing N N 473 LYS CG HG2 sing N N 474 LYS CG HG3 sing N N 475 LYS CD CE sing N N 476 LYS CD HD2 sing N N 477 LYS CD HD3 sing N N 478 LYS CE NZ sing N N 479 LYS CE HE2 sing N N 480 LYS CE HE3 sing N N 481 LYS NZ HZ1 sing N N 482 LYS NZ HZ2 sing N N 483 LYS NZ HZ3 sing N N 484 LYS OXT HXT sing N N 485 MET N CA sing N N 486 MET N H sing N N 487 MET N H2 sing N N 488 MET CA C sing N N 489 MET CA CB sing N N 490 MET CA HA sing N N 491 MET C O doub N N 492 MET C OXT sing N N 493 MET CB CG sing N N 494 MET CB HB2 sing N N 495 MET CB HB3 sing N N 496 MET CG SD sing N N 497 MET CG HG2 sing N N 498 MET CG HG3 sing N N 499 MET SD CE sing N N 500 MET CE HE1 sing N N 501 MET CE HE2 sing N N 502 MET CE HE3 sing N N 503 MET OXT HXT sing N N 504 PHE N CA sing N N 505 PHE N H sing N N 506 PHE N H2 sing N N 507 PHE CA C sing N N 508 PHE CA CB sing N N 509 PHE CA HA sing N N 510 PHE C O doub N N 511 PHE C OXT sing N N 512 PHE CB CG sing N N 513 PHE CB HB2 sing N N 514 PHE CB HB3 sing N N 515 PHE CG CD1 doub Y N 516 PHE CG CD2 sing Y N 517 PHE CD1 CE1 sing Y N 518 PHE CD1 HD1 sing N N 519 PHE CD2 CE2 doub Y N 520 PHE CD2 HD2 sing N N 521 PHE CE1 CZ doub Y N 522 PHE CE1 HE1 sing N N 523 PHE CE2 CZ sing Y N 524 PHE CE2 HE2 sing N N 525 PHE CZ HZ sing N N 526 PHE OXT HXT sing N N 527 PRO N CA sing N N 528 PRO N CD sing N N 529 PRO N H sing N N 530 PRO CA C sing N N 531 PRO CA CB sing N N 532 PRO CA HA sing N N 533 PRO C O doub N N 534 PRO C OXT sing N N 535 PRO CB CG sing N N 536 PRO CB HB2 sing N N 537 PRO CB HB3 sing N N 538 PRO CG CD sing N N 539 PRO CG HG2 sing N N 540 PRO CG HG3 sing N N 541 PRO CD HD2 sing N N 542 PRO CD HD3 sing N N 543 PRO OXT HXT sing N N 544 SER N CA sing N N 545 SER N H sing N N 546 SER N H2 sing N N 547 SER CA C sing N N 548 SER CA CB sing N N 549 SER CA HA sing N N 550 SER C O doub N N 551 SER C OXT sing N N 552 SER CB OG sing N N 553 SER CB HB2 sing N N 554 SER CB HB3 sing N N 555 SER OG HG sing N N 556 SER OXT HXT sing N N 557 THR N CA sing N N 558 THR N H sing N N 559 THR N H2 sing N N 560 THR CA C sing N N 561 THR CA CB sing N N 562 THR CA HA sing N N 563 THR C O doub N N 564 THR C OXT sing N N 565 THR CB OG1 sing N N 566 THR CB CG2 sing N N 567 THR CB HB sing N N 568 THR OG1 HG1 sing N N 569 THR CG2 HG21 sing N N 570 THR CG2 HG22 sing N N 571 THR CG2 HG23 sing N N 572 THR OXT HXT sing N N 573 TRP N CA sing N N 574 TRP N H sing N N 575 TRP N H2 sing N N 576 TRP CA C sing N N 577 TRP CA CB sing N N 578 TRP CA HA sing N N 579 TRP C O doub N N 580 TRP C OXT sing N N 581 TRP CB CG sing N N 582 TRP CB HB2 sing N N 583 TRP CB HB3 sing N N 584 TRP CG CD1 doub Y N 585 TRP CG CD2 sing Y N 586 TRP CD1 NE1 sing Y N 587 TRP CD1 HD1 sing N N 588 TRP CD2 CE2 doub Y N 589 TRP CD2 CE3 sing Y N 590 TRP NE1 CE2 sing Y N 591 TRP NE1 HE1 sing N N 592 TRP CE2 CZ2 sing Y N 593 TRP CE3 CZ3 doub Y N 594 TRP CE3 HE3 sing N N 595 TRP CZ2 CH2 doub Y N 596 TRP CZ2 HZ2 sing N N 597 TRP CZ3 CH2 sing Y N 598 TRP CZ3 HZ3 sing N N 599 TRP CH2 HH2 sing N N 600 TRP OXT HXT sing N N 601 TYR N CA sing N N 602 TYR N H sing N N 603 TYR N H2 sing N N 604 TYR CA C sing N N 605 TYR CA CB sing N N 606 TYR CA HA sing N N 607 TYR C O doub N N 608 TYR C OXT sing N N 609 TYR CB CG sing N N 610 TYR CB HB2 sing N N 611 TYR CB HB3 sing N N 612 TYR CG CD1 doub Y N 613 TYR CG CD2 sing Y N 614 TYR CD1 CE1 sing Y N 615 TYR CD1 HD1 sing N N 616 TYR CD2 CE2 doub Y N 617 TYR CD2 HD2 sing N N 618 TYR CE1 CZ doub Y N 619 TYR CE1 HE1 sing N N 620 TYR CE2 CZ sing Y N 621 TYR CE2 HE2 sing N N 622 TYR CZ OH sing N N 623 TYR OH HH sing N N 624 TYR OXT HXT sing N N 625 VAL N CA sing N N 626 VAL N H sing N N 627 VAL N H2 sing N N 628 VAL CA C sing N N 629 VAL CA CB sing N N 630 VAL CA HA sing N N 631 VAL C O doub N N 632 VAL C OXT sing N N 633 VAL CB CG1 sing N N 634 VAL CB CG2 sing N N 635 VAL CB HB sing N N 636 VAL CG1 HG11 sing N N 637 VAL CG1 HG12 sing N N 638 VAL CG1 HG13 sing N N 639 VAL CG2 HG21 sing N N 640 VAL CG2 HG22 sing N N 641 VAL CG2 HG23 sing N N 642 VAL OXT HXT sing N N 643 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MQ3 'double helix' 1MQ3 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 5 1_555 1.742 -0.120 0.049 -8.110 1.321 8.691 1 T_DC1:DG5_D T 1 ? D 5 ? ? 1 1 A DC 2 1_555 C DG 4 1_555 -0.549 0.131 0.662 -15.153 -12.437 0.426 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 A DG 3 1_555 C DC 3 1_555 -1.240 -0.268 0.286 7.300 -16.796 6.347 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 A DA 4 1_555 C DT 2 1_555 0.370 -0.345 0.290 2.277 -21.573 -7.010 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 A DC 5 1_555 C DG 1 1_555 0.851 -0.142 -0.116 8.225 4.495 -0.146 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 A DG 7 1_555 B DOC 10 1_555 0.890 -0.326 -0.992 -12.784 5.282 -8.855 6 T_DG7:DOC10_P T 7 ? P 10 ? 19 1 1 A DC 8 1_555 B DG 9 1_555 0.246 -0.158 -1.462 26.235 -2.061 5.251 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 -0.045 0.174 -1.175 -5.910 -6.558 2.500 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 A DC 10 1_555 B DG 7 1_555 0.554 0.061 -1.005 22.291 -14.641 8.434 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 -0.108 -0.183 0.290 13.775 -16.372 1.139 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 -0.151 0.018 0.482 0.848 1.141 -0.216 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 -0.252 -0.106 -0.375 7.790 0.875 -3.290 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 0.311 0.113 0.330 8.484 -0.512 4.387 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 -0.032 0.364 0.911 -0.343 1.286 2.279 14 T_DG15:DC2_P T 15 ? P 2 ? ? 1 1 A DC 16 1_555 B DG 1 1_555 1.356 -0.390 0.556 0.659 1.746 4.661 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 5 1_555 A DC 2 1_555 C DG 4 1_555 -1.051 1.366 3.681 -7.662 -3.898 33.653 2.971 0.425 3.649 -6.601 12.973 34.703 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 A DC 2 1_555 C DG 4 1_555 A DG 3 1_555 C DC 3 1_555 0.506 1.222 3.018 7.143 -3.558 32.737 2.643 0.198 2.915 -6.198 -12.444 33.669 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 A DG 3 1_555 C DC 3 1_555 A DA 4 1_555 C DT 2 1_555 -1.010 1.662 3.440 -5.106 -1.421 45.300 2.277 0.828 3.477 -1.837 6.603 45.593 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 A DA 4 1_555 C DT 2 1_555 A DC 5 1_555 C DG 1 1_555 0.883 -0.006 3.025 4.035 7.189 34.103 -1.025 -0.896 3.043 12.040 -6.758 35.057 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 A DG 7 1_555 B DOC 10 1_555 A DC 8 1_555 B DG 9 1_555 0.865 -0.066 2.381 4.338 -1.918 25.217 0.257 -1.028 2.490 -4.343 -9.824 25.652 5 TT_DG7DC8:DG9DOC10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 A DC 8 1_555 B DG 9 1_555 A DG 9 1_555 B DC 8 1_555 -1.207 0.361 4.238 -3.108 18.406 36.661 -2.188 1.267 4.052 27.206 4.594 40.994 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 A DG 9 1_555 B DC 8 1_555 A DC 10 1_555 B DG 7 1_555 -0.371 0.282 2.713 0.195 0.282 30.182 0.495 0.745 2.713 0.541 -0.374 30.184 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 0.240 -0.195 3.326 -6.856 8.462 35.413 -1.451 -1.306 3.102 13.522 10.956 36.998 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 0.206 -0.993 3.633 -1.961 3.243 31.959 -2.425 -0.755 3.500 5.864 3.546 32.177 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 0.371 0.032 2.973 10.087 -1.226 35.913 0.200 0.657 2.964 -1.941 -15.968 37.277 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 0.079 -0.371 3.301 -1.618 10.885 36.371 -1.955 -0.327 3.063 16.967 2.521 37.945 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 0.093 -0.379 3.368 -4.752 5.895 31.316 -1.754 -1.031 3.198 10.726 8.646 32.196 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 0.179 -0.571 3.145 2.236 5.154 40.568 -1.354 -0.023 3.058 7.391 -3.206 40.939 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BPY _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 1MQ3 _atom_sites.fract_transf_matrix[1][1] 0.019802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006396 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012516 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018901 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_