data_1N2W # _entry.id 1N2W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1N2W pdb_00001n2w 10.2210/pdb1n2w/pdb RCSB RCSB017450 ? ? WWPDB D_1000017450 ? ? BMRB 5385 ? 10.13018/BMR5385 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-13 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-02-05 5 'Structure model' 1 4 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' ndb_struct_conf_na 3 4 'Structure model' ndb_struct_na_base_pair 4 4 'Structure model' ndb_struct_na_base_pair_step 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_nmr_software 7 4 'Structure model' pdbx_struct_assembly 8 4 'Structure model' pdbx_struct_assembly_prop 9 4 'Structure model' pdbx_struct_oper_list 10 4 'Structure model' struct_conn 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.status_code_cs' 2 4 'Structure model' '_pdbx_nmr_software.name' 3 4 'Structure model' '_struct_conn.details' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 5 'Structure model' '_database_2.pdbx_DOI' 16 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1N2W _pdbx_database_status.recvd_initial_deposition_date 2002-10-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 5385 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thiviyanathan, V.' 1 'Somasunderam, A.D.' 2 'Hazra, T.K.' 3 'Mitra, S.' 4 'Gorenstein, D.G.' 5 # _citation.id primary _citation.title ;Solution Structure of a DNA Duplex Containing 8-Hydroxy-2'-Deoxyguanosine Opposite Deoxyguanosine ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 325 _citation.page_first 433 _citation.page_last 442 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12498794 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)01272-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thiviyanathan, V.' 1 ? primary 'Somasunderam, A.D.' 2 ? primary 'Hazra, T.K.' 3 ? primary 'Mitra, S.' 4 ? primary 'Gorenstein, D.G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(8OG)P*GP*CP*G)-3'" _entity.formula_weight 3719.416 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(8OG)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTGGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 8OG n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Eco RI sequence' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 8OG 9 9 9 8OG 8OG A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 8OG 9 21 21 8OG 8OG B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # _exptl.entry_id 1N2W _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1N2W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1N2W _struct.title 'Solution Structure of 8OG:G mismatch containing duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1N2W _struct_keywords.pdbx_keywords DNA _struct_keywords.text '8OG, G:G MISMATCH, OXIDATIVE DAMAGE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1N2W _struct_ref.pdbx_db_accession 1N2W _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1N2W A 1 ? 12 ? 1N2W 1 ? 12 ? 1 12 2 1 1N2W B 1 ? 12 ? 1N2W 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -1 ? 1 'SSA (A^2)' 4390 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A 8OG 9 P ? ? A DT 8 A 8OG 9 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale2 covale both ? A 8OG 9 "O3'" ? ? ? 1_555 A DG 10 P ? ? A 8OG 9 A DG 10 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 8OG 9 P ? ? B DT 20 B 8OG 21 1_555 ? ? ? ? ? ? ? 1.639 ? ? covale4 covale both ? B 8OG 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B 8OG 21 B DG 22 1_555 ? ? ? ? ? ? ? 1.561 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 8OG 9 N7 ? ? A DG 4 B 8OG 21 1_555 ? ? ? ? ? ? 'DG-8OG MISPAIR' ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A 8OG 9 N7 ? ? ? 1_555 B DG 4 N1 ? ? A 8OG 9 B DG 16 1_555 ? ? ? ? ? ? '8OG-DG MISPAIR' ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.433 1.388 0.045 0.006 N 2 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.382 1.419 -0.037 0.006 N 3 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.277 1.341 -0.064 0.010 N 4 1 P A DA 5 ? ? "O5'" A DA 5 ? ? 1.532 1.593 -0.061 0.010 N 5 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? 1.376 1.446 -0.070 0.010 N 6 1 N3 A DA 5 ? ? C4 A DA 5 ? ? 1.392 1.344 0.048 0.006 N 7 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.513 1.593 -0.080 0.010 N 8 1 "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.452 1.518 -0.066 0.010 N 9 1 C5 A DT 8 ? ? C6 A DT 8 ? ? 1.402 1.339 0.063 0.007 N 10 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.367 1.446 -0.079 0.010 N 11 1 C6 A DG 10 ? ? N1 A DG 10 ? ? 1.348 1.391 -0.043 0.007 N 12 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.441 1.388 0.053 0.006 N 13 1 N1 A DG 12 ? ? C2 A DG 12 ? ? 1.314 1.373 -0.059 0.008 N 14 1 N3 B DG 14 ? ? C4 B DG 14 ? ? 1.394 1.350 0.044 0.007 N 15 1 C6 B DG 14 ? ? N1 B DG 14 ? ? 1.334 1.391 -0.057 0.007 N 16 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.569 1.512 0.057 0.007 N 17 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.436 1.388 0.048 0.006 N 18 1 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.280 1.335 -0.055 0.008 N 19 1 C6 B DA 18 ? ? N1 B DA 18 ? ? 1.291 1.351 -0.060 0.007 N 20 1 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 1.374 1.446 -0.072 0.010 N 21 1 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.540 1.496 0.044 0.006 N 22 1 N1 B DT 20 ? ? C2 B DT 20 ? ? 1.437 1.376 0.061 0.008 N 23 1 C6 B DG 22 ? ? N1 B DG 22 ? ? 1.336 1.391 -0.055 0.007 N 24 1 "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 1.561 1.512 0.049 0.007 N 25 1 N1 B DG 24 ? ? C2 B DG 24 ? ? 1.298 1.373 -0.075 0.008 N 26 1 C6 B DG 24 ? ? N1 B DG 24 ? ? 1.325 1.391 -0.066 0.007 N 27 1 C5 B DG 24 ? ? N7 B DG 24 ? ? 1.432 1.388 0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.37 118.90 5.47 0.60 N 2 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.28 121.90 -6.62 0.70 N 3 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 112.34 106.00 6.34 0.60 N 4 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.67 123.90 3.77 0.60 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 108.16 110.80 -2.64 0.40 N 6 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 114.96 119.90 -4.94 0.60 N 7 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.78 102.40 -5.62 0.80 N 8 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 122.32 117.40 4.92 0.50 N 9 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 116.67 121.00 -4.33 0.50 N 10 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 111.35 106.00 5.35 0.60 N 11 1 "C1'" A DG 4 ? ? "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 101.70 110.10 -8.40 1.00 N 12 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.62 108.30 3.32 0.30 N 13 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 115.76 111.90 3.86 0.50 N 14 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.49 128.60 -3.11 0.50 N 15 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 102.56 106.40 -3.84 0.40 N 16 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.41 119.90 -4.49 0.60 N 17 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 113.26 106.00 7.26 0.60 N 18 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.66 117.00 -3.34 0.50 N 19 1 C8 A DA 5 ? ? N9 A DA 5 ? ? C4 A DA 5 ? ? 108.36 105.80 2.56 0.40 N 20 1 N9 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 103.11 105.80 -2.69 0.40 N 21 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 113.97 106.00 7.97 0.60 N 22 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 111.74 117.00 -5.26 0.50 N 23 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 120.97 117.70 3.27 0.50 N 24 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.03 118.60 -5.57 0.60 N 25 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 110.41 102.50 7.91 1.20 N 26 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.94 108.30 4.64 0.30 N 27 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 109.83 106.00 3.83 0.60 N 28 1 "C3'" A 8OG 9 ? ? "O3'" A 8OG 9 ? ? P A DG 10 ? ? 127.02 119.70 7.32 1.20 Y 29 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.55 108.30 2.25 0.30 N 30 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 109.70 106.00 3.70 0.60 N 31 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 115.45 121.90 -6.45 0.70 N 32 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 101.00 105.90 -4.90 0.80 N 33 1 C4 A DG 12 ? ? C5 A DG 12 ? ? N7 A DG 12 ? ? 113.49 110.80 2.69 0.40 N 34 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 116.20 119.90 -3.70 0.50 N 35 1 C4 B DG 14 ? ? C5 B DG 14 ? ? C6 B DG 14 ? ? 114.59 118.80 -4.21 0.60 N 36 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 117.38 111.50 5.88 0.50 N 37 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 100.76 104.30 -3.54 0.50 N 38 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.48 113.10 3.38 0.50 N 39 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 113.85 119.90 -6.05 0.60 N 40 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? 110.50 106.00 4.50 0.60 N 41 1 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 97.85 102.20 -4.35 0.70 N 42 1 C6 B DC 15 ? ? N1 B DC 15 ? ? C2 B DC 15 ? ? 116.45 120.30 -3.85 0.40 N 43 1 N1 B DC 15 ? ? C2 B DC 15 ? ? N3 B DC 15 ? ? 127.20 119.20 8.00 0.70 N 44 1 C2 B DC 15 ? ? N3 B DC 15 ? ? C4 B DC 15 ? ? 113.37 119.90 -6.53 0.50 N 45 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 112.82 121.90 -9.08 0.70 N 46 1 C5 B DC 15 ? ? C4 B DC 15 ? ? N4 B DC 15 ? ? 114.07 120.20 -6.13 0.70 N 47 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 110.44 106.00 4.44 0.60 N 48 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 115.90 111.50 4.40 0.50 N 49 1 C6 B DG 16 ? ? C5 B DG 16 ? ? N7 B DG 16 ? ? 134.84 130.40 4.44 0.60 N 50 1 N3 B DG 16 ? ? C2 B DG 16 ? ? N2 B DG 16 ? ? 114.72 119.90 -5.18 0.70 N 51 1 C5 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 124.72 128.60 -3.88 0.60 N 52 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 110.37 117.00 -6.63 0.50 N 53 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.81 117.70 4.11 0.50 N 54 1 C6 B DA 17 ? ? C5 B DA 17 ? ? N7 B DA 17 ? ? 138.78 132.30 6.48 0.70 N 55 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 112.38 118.60 -6.22 0.60 N 56 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 110.07 106.00 4.07 0.60 N 57 1 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 113.27 117.00 -3.73 0.50 N 58 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 123.09 117.70 5.39 0.50 N 59 1 N9 B DA 18 ? ? C4 B DA 18 ? ? C5 B DA 18 ? ? 108.76 105.80 2.96 0.40 N 60 1 C6 B DA 18 ? ? C5 B DA 18 ? ? N7 B DA 18 ? ? 136.64 132.30 4.34 0.70 N 61 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 112.56 118.60 -6.04 0.60 N 62 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.59 108.30 3.29 0.30 N 63 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 123.31 127.20 -3.89 0.60 N 64 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 111.45 106.00 5.45 0.60 N 65 1 "C1'" B DT 20 ? ? "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? 104.05 110.10 -6.05 1.00 N 66 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 110.17 106.80 3.37 0.50 N 67 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.78 108.30 3.48 0.30 N 68 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 123.21 127.20 -3.99 0.60 N 69 1 C4 B DT 20 ? ? C5 B DT 20 ? ? C6 B DT 20 ? ? 128.65 118.00 10.65 0.60 N 70 1 C5 B DT 20 ? ? C6 B DT 20 ? ? N1 B DT 20 ? ? 114.18 123.70 -9.52 0.60 N 71 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 115.47 122.90 -7.43 0.60 N 72 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B 8OG 21 ? ? 127.57 119.70 7.87 1.20 Y 73 1 N7 B DG 22 ? ? C8 B DG 22 ? ? N9 B DG 22 ? ? 117.19 113.10 4.09 0.50 N 74 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 102.88 106.40 -3.52 0.40 N 75 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.83 118.90 3.93 0.60 N 76 1 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.38 121.90 -5.52 0.70 N 77 1 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 95.58 102.20 -6.62 0.70 N 78 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 114.61 111.50 3.11 0.50 N 79 1 C5 B DG 24 ? ? N7 B DG 24 ? ? C8 B DG 24 ? ? 100.77 104.30 -3.53 0.50 N 80 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 119.24 113.10 6.14 0.50 N 81 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 114.66 119.90 -5.24 0.70 N 82 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 113.98 119.90 -5.92 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.065 'SIDE CHAIN' 2 1 DG A 4 ? ? 0.093 'SIDE CHAIN' 3 1 DG A 10 ? ? 0.061 'SIDE CHAIN' 4 1 DC A 11 ? ? 0.134 'SIDE CHAIN' 5 1 DG A 12 ? ? 0.073 'SIDE CHAIN' 6 1 DC B 15 ? ? 0.090 'SIDE CHAIN' 7 1 DG B 16 ? ? 0.093 'SIDE CHAIN' 8 1 DA B 18 ? ? 0.077 'SIDE CHAIN' 9 1 DT B 19 ? ? 0.081 'SIDE CHAIN' 10 1 DT B 20 ? ? 0.110 'SIDE CHAIN' 11 1 DG B 22 ? ? 0.069 'SIDE CHAIN' 12 1 DC B 23 ? ? 0.094 'SIDE CHAIN' 13 1 DG B 24 ? ? 0.119 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 8OG 9 A 8OG 9 ? DG ? 2 B 8OG 9 B 8OG 21 ? DG ? # _pdbx_nmr_ensemble.entry_id 1N2W _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 mM DNA, 10 mM Sodium phosphate buffer' _pdbx_nmr_sample_details.solvent_system '100% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 '2D TOCSY' # _pdbx_nmr_refine.entry_id 1N2W _pdbx_nmr_refine.method 'Relaxation matrix refinement, molecular dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR x 'data analysis' Varian 1 MORASS 2.5 'iterative matrix relaxation' Meadows 2 Amber 5.0 refinement UCSF 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 DA OP3 O N N 39 DA P P N N 40 DA OP1 O N N 41 DA OP2 O N N 42 DA "O5'" O N N 43 DA "C5'" C N N 44 DA "C4'" C N R 45 DA "O4'" O N N 46 DA "C3'" C N S 47 DA "O3'" O N N 48 DA "C2'" C N N 49 DA "C1'" C N R 50 DA N9 N Y N 51 DA C8 C Y N 52 DA N7 N Y N 53 DA C5 C Y N 54 DA C6 C Y N 55 DA N6 N N N 56 DA N1 N Y N 57 DA C2 C Y N 58 DA N3 N Y N 59 DA C4 C Y N 60 DA HOP3 H N N 61 DA HOP2 H N N 62 DA "H5'" H N N 63 DA "H5''" H N N 64 DA "H4'" H N N 65 DA "H3'" H N N 66 DA "HO3'" H N N 67 DA "H2'" H N N 68 DA "H2''" H N N 69 DA "H1'" H N N 70 DA H8 H N N 71 DA H61 H N N 72 DA H62 H N N 73 DA H2 H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 DA OP3 P sing N N 41 DA OP3 HOP3 sing N N 42 DA P OP1 doub N N 43 DA P OP2 sing N N 44 DA P "O5'" sing N N 45 DA OP2 HOP2 sing N N 46 DA "O5'" "C5'" sing N N 47 DA "C5'" "C4'" sing N N 48 DA "C5'" "H5'" sing N N 49 DA "C5'" "H5''" sing N N 50 DA "C4'" "O4'" sing N N 51 DA "C4'" "C3'" sing N N 52 DA "C4'" "H4'" sing N N 53 DA "O4'" "C1'" sing N N 54 DA "C3'" "O3'" sing N N 55 DA "C3'" "C2'" sing N N 56 DA "C3'" "H3'" sing N N 57 DA "O3'" "HO3'" sing N N 58 DA "C2'" "C1'" sing N N 59 DA "C2'" "H2'" sing N N 60 DA "C2'" "H2''" sing N N 61 DA "C1'" N9 sing N N 62 DA "C1'" "H1'" sing N N 63 DA N9 C8 sing Y N 64 DA N9 C4 sing Y N 65 DA C8 N7 doub Y N 66 DA C8 H8 sing N N 67 DA N7 C5 sing Y N 68 DA C5 C6 sing Y N 69 DA C5 C4 doub Y N 70 DA C6 N6 sing N N 71 DA C6 N1 doub Y N 72 DA N6 H61 sing N N 73 DA N6 H62 sing N N 74 DA N1 C2 sing Y N 75 DA C2 N3 doub Y N 76 DA C2 H2 sing N N 77 DA N3 C4 sing Y N 78 DC OP3 P sing N N 79 DC OP3 HOP3 sing N N 80 DC P OP1 doub N N 81 DC P OP2 sing N N 82 DC P "O5'" sing N N 83 DC OP2 HOP2 sing N N 84 DC "O5'" "C5'" sing N N 85 DC "C5'" "C4'" sing N N 86 DC "C5'" "H5'" sing N N 87 DC "C5'" "H5''" sing N N 88 DC "C4'" "O4'" sing N N 89 DC "C4'" "C3'" sing N N 90 DC "C4'" "H4'" sing N N 91 DC "O4'" "C1'" sing N N 92 DC "C3'" "O3'" sing N N 93 DC "C3'" "C2'" sing N N 94 DC "C3'" "H3'" sing N N 95 DC "O3'" "HO3'" sing N N 96 DC "C2'" "C1'" sing N N 97 DC "C2'" "H2'" sing N N 98 DC "C2'" "H2''" sing N N 99 DC "C1'" N1 sing N N 100 DC "C1'" "H1'" sing N N 101 DC N1 C2 sing N N 102 DC N1 C6 sing N N 103 DC C2 O2 doub N N 104 DC C2 N3 sing N N 105 DC N3 C4 doub N N 106 DC C4 N4 sing N N 107 DC C4 C5 sing N N 108 DC N4 H41 sing N N 109 DC N4 H42 sing N N 110 DC C5 C6 doub N N 111 DC C5 H5 sing N N 112 DC C6 H6 sing N N 113 DG OP3 P sing N N 114 DG OP3 HOP3 sing N N 115 DG P OP1 doub N N 116 DG P OP2 sing N N 117 DG P "O5'" sing N N 118 DG OP2 HOP2 sing N N 119 DG "O5'" "C5'" sing N N 120 DG "C5'" "C4'" sing N N 121 DG "C5'" "H5'" sing N N 122 DG "C5'" "H5''" sing N N 123 DG "C4'" "O4'" sing N N 124 DG "C4'" "C3'" sing N N 125 DG "C4'" "H4'" sing N N 126 DG "O4'" "C1'" sing N N 127 DG "C3'" "O3'" sing N N 128 DG "C3'" "C2'" sing N N 129 DG "C3'" "H3'" sing N N 130 DG "O3'" "HO3'" sing N N 131 DG "C2'" "C1'" sing N N 132 DG "C2'" "H2'" sing N N 133 DG "C2'" "H2''" sing N N 134 DG "C1'" N9 sing N N 135 DG "C1'" "H1'" sing N N 136 DG N9 C8 sing Y N 137 DG N9 C4 sing Y N 138 DG C8 N7 doub Y N 139 DG C8 H8 sing N N 140 DG N7 C5 sing Y N 141 DG C5 C6 sing N N 142 DG C5 C4 doub Y N 143 DG C6 O6 doub N N 144 DG C6 N1 sing N N 145 DG N1 C2 sing N N 146 DG N1 H1 sing N N 147 DG C2 N2 sing N N 148 DG C2 N3 doub N N 149 DG N2 H21 sing N N 150 DG N2 H22 sing N N 151 DG N3 C4 sing N N 152 DT OP3 P sing N N 153 DT OP3 HOP3 sing N N 154 DT P OP1 doub N N 155 DT P OP2 sing N N 156 DT P "O5'" sing N N 157 DT OP2 HOP2 sing N N 158 DT "O5'" "C5'" sing N N 159 DT "C5'" "C4'" sing N N 160 DT "C5'" "H5'" sing N N 161 DT "C5'" "H5''" sing N N 162 DT "C4'" "O4'" sing N N 163 DT "C4'" "C3'" sing N N 164 DT "C4'" "H4'" sing N N 165 DT "O4'" "C1'" sing N N 166 DT "C3'" "O3'" sing N N 167 DT "C3'" "C2'" sing N N 168 DT "C3'" "H3'" sing N N 169 DT "O3'" "HO3'" sing N N 170 DT "C2'" "C1'" sing N N 171 DT "C2'" "H2'" sing N N 172 DT "C2'" "H2''" sing N N 173 DT "C1'" N1 sing N N 174 DT "C1'" "H1'" sing N N 175 DT N1 C2 sing N N 176 DT N1 C6 sing N N 177 DT C2 O2 doub N N 178 DT C2 N3 sing N N 179 DT N3 C4 sing N N 180 DT N3 H3 sing N N 181 DT C4 O4 doub N N 182 DT C4 C5 sing N N 183 DT C5 C7 sing N N 184 DT C5 C6 doub N N 185 DT C7 H71 sing N N 186 DT C7 H72 sing N N 187 DT C7 H73 sing N N 188 DT C6 H6 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1N2W 'double helix' 1N2W 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.255 0.099 0.310 -10.727 -10.650 -4.746 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 0.014 -0.081 0.170 -3.426 -3.676 -3.396 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.163 -0.064 -0.046 -4.826 1.307 -5.953 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B 8OG 9 1_555 -1.351 6.103 1.227 -9.202 -20.512 -77.052 4 A_DG4:8OG21_B A 4 ? B 21 ? ? ? 1 A DA 5 1_555 B DT 8 1_555 0.039 0.085 0.569 -3.081 -20.205 11.983 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.032 0.032 0.504 -1.161 -22.948 8.065 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.110 0.072 0.852 -7.894 -23.235 11.695 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.103 -0.103 0.415 -8.188 -25.955 7.188 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A 8OG 9 1_555 B DG 4 1_555 2.395 -6.230 0.088 -12.260 12.805 85.779 9 A_8OG9:DG16_B A 9 ? B 16 ? ? ? 1 A DG 10 1_555 B DC 3 1_555 0.684 -0.073 0.350 -2.269 -6.108 -3.983 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.132 -0.088 0.427 -12.957 -14.605 0.504 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.303 -0.089 0.306 -4.859 2.454 -9.202 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.066 -0.287 3.234 1.164 4.401 27.004 -1.676 0.422 3.143 9.341 -2.470 27.378 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 -0.269 -0.799 3.467 0.538 5.540 35.437 -2.124 0.517 3.305 9.032 -0.877 35.858 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B 8OG 9 1_555 3.146 -3.307 2.040 5.868 11.849 63.608 -3.374 -2.791 1.719 11.115 -5.504 64.827 3 AA_DC3DG4:8OG21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B 8OG 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.213 2.485 3.694 -1.432 0.286 3.120 36.028 -23.061 3.640 4.907 24.604 3.444 4 AA_DG4DA5:DT208OG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.408 0.020 2.965 -0.994 1.748 36.307 -0.189 0.527 2.972 2.802 1.593 36.361 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.528 -0.972 3.306 0.295 -1.877 28.115 -1.548 -1.014 3.368 -3.857 -0.606 28.177 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.102 -0.250 3.099 1.981 0.077 39.165 -0.381 0.072 3.100 0.115 -2.952 39.213 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A 8OG 9 1_555 B DG 4 1_555 2.251 -3.397 -0.135 -173.763 -0.111 129.999 -1.699 -0.992 -1.072 -0.056 87.173 177.365 8 AA_DT88OG9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A 8OG 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -1.348 4.378 -0.707 -147.374 95.820 -141.255 -2.071 -0.492 -1.833 -47.975 -73.787 -178.602 9 AA_8OG9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 0.028 -1.190 3.520 1.308 -3.262 36.351 -1.407 0.153 3.608 -5.213 -2.090 36.515 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.404 0.030 2.983 -0.882 5.761 27.076 -1.213 0.650 2.938 12.127 1.857 27.685 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian UNITYPLUS 750 2 ? Varian UNITYPLUS 600 # _atom_sites.entry_id 1N2W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_