HEADER IMMUNE SYSTEM/HYDROLASE 04-DEC-02 1NBZ TITLE CRYSTAL STRUCTURE OF HYHEL-63 COMPLEXED WITH HEL MUTANT K97A CAVEAT 1NBZ THERE IS ONE ICORRECT CHIRAL CARBON CENTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY KAPPA LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FIRST CHAIN OF ANTI-LYSOZYME ANTIBODY HYHEL-63; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IMMUNOGLOBULIN GAMMA 1 CHAIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SECOND CHAIN OF ANTI-LYSOZYME ANTIBODY HYHEL-63; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: LYSOZYME C; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; ALLERGEN GAL D 4; GAL D IV; COMPND 16 EC: 3.2.1.17; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 19 ORGANISM_COMMON: CHICKEN; SOURCE 20 ORGANISM_TAXID: 9031; SOURCE 21 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 22 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 25 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS ANTIBODY, LYSOZYME, MUTANT, IMMUNE SYSTEM-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.A.MARIUZZA,Y.LI,M.URRUTIA,S.J.SMITH-GILL REVDAT 4 27-OCT-21 1NBZ 1 SEQADV SHEET REVDAT 3 24-FEB-09 1NBZ 1 VERSN REVDAT 2 07-SEP-04 1NBZ 1 TITLE REMARK REVDAT 1 01-APR-03 1NBZ 0 JRNL AUTH Y.LI,M.URRUTIA,S.J.SMITH-GILL,R.A.MARIUZZA JRNL TITL DISSECTION OF BINDING INTERACTIONS IN THE COMPLEX BETWEEN JRNL TITL 2 THE ANTI-LYSOZYME ANTIBODY HYHEL-63 AND ITS ANTIGEN JRNL REF BIOCHEMISTRY V. 42 11 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12515535 JRNL DOI 10.1021/BI020589+ REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 357507.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 42777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4306 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5527 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 601 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.88000 REMARK 3 B33 (A**2) : -1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.150 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.110 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 46.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM ACETATE, SODIUM REMARK 280 ACETATE, PH 4.60, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.45150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.59200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.45150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.59200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.45150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.59200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.45150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.45150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.59200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CD1 REMARK 470 ILE A 29 CD1 REMARK 470 ILE A 48 CD1 REMARK 470 ILE A 55 CD1 REMARK 470 ILE A 58 CD1 REMARK 470 ILE A 75 CD1 REMARK 470 ILE A 106 CD1 REMARK 470 ILE A 117 CD1 REMARK 470 ILE A 144 CD1 REMARK 470 ILE A 150 CD1 REMARK 470 ILE A 205 CD1 REMARK 470 CYS A 214 O REMARK 470 ILE B 337 CD1 REMARK 470 ILE B 351 CD1 REMARK 470 ILE B 367 CD1 REMARK 470 ILE B 369 CD1 REMARK 470 ILE B 493 CD1 REMARK 470 ILE B 510 O CD1 REMARK 470 ILE C 655 CD1 REMARK 470 ILE C 658 CD1 REMARK 470 ILE C 678 CD1 REMARK 470 ILE C 688 CD1 REMARK 470 ILE C 698 CD1 REMARK 470 ILE C 724 CD1 REMARK 470 LEU C 729 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 364 N SER B 365 1.46 REMARK 500 O LYS C 716 N GLY C 717 1.56 REMARK 500 O SER B 365 N ARG B 366 1.75 REMARK 500 O HIS A 41 O HOH A 317 2.07 REMARK 500 OE1 GLU A 105 OH TYR A 173 2.15 REMARK 500 OG SER A 12 OE2 GLU A 105 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 430 O HOH C 366 1455 1.67 REMARK 500 O HOH B 610 O HOH B 610 2765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 40 C HIS A 41 N 0.201 REMARK 500 HIS A 41 C GLU A 42 N -0.185 REMARK 500 GLU A 42 C SER A 43 N 0.254 REMARK 500 LYS B 364 C SER B 365 N -0.696 REMARK 500 SER B 365 C ARG B 366 N -0.375 REMARK 500 GLY B 429 C ASP B 430 N -0.261 REMARK 500 TRP C 662 C TRP C 663 N -0.248 REMARK 500 LYS C 716 C GLY C 717 N -0.226 REMARK 500 GLY C 717 C THR C 718 N 0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 41 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 HIS A 41 CA - C - N ANGL. DEV. = -20.5 DEGREES REMARK 500 HIS A 41 O - C - N ANGL. DEV. = 20.7 DEGREES REMARK 500 ASN A 212 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 GLU A 213 C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 GLU A 213 CB - CA - C ANGL. DEV. = 49.6 DEGREES REMARK 500 GLU A 213 N - CA - C ANGL. DEV. = -46.6 DEGREES REMARK 500 LYS B 364 O - C - N ANGL. DEV. = -25.2 DEGREES REMARK 500 SER B 365 O - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 CYS B 395 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 430 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP B 430 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 LYS C 716 CA - C - N ANGL. DEV. = 38.4 DEGREES REMARK 500 LYS C 716 O - C - N ANGL. DEV. = -39.7 DEGREES REMARK 500 GLY C 717 C - N - CA ANGL. DEV. = 47.1 DEGREES REMARK 500 GLY C 717 CA - C - N ANGL. DEV. = -27.0 DEGREES REMARK 500 THR C 718 C - N - CA ANGL. DEV. = 19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -114.89 49.19 REMARK 500 SER A 40 -127.29 122.22 REMARK 500 ALA A 51 -43.04 68.05 REMARK 500 SER A 77 74.01 71.81 REMARK 500 SER B 315 -15.34 84.71 REMARK 500 ASP B 332 170.69 175.74 REMARK 500 ASN B 343 -4.59 86.75 REMARK 500 LYS B 364 -80.95 41.20 REMARK 500 SER B 365 -8.23 -178.55 REMARK 500 SER B 384 56.86 39.48 REMARK 500 THR B 431 102.32 178.83 REMARK 500 ASP B 473 -12.86 75.58 REMARK 500 ARG C 668 33.65 -143.48 REMARK 500 LYS C 716 108.00 -43.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 39 -13.70 REMARK 500 ASN A 212 -21.72 REMARK 500 LYS B 364 -32.86 REMARK 500 SER B 365 18.68 REMARK 500 GLY C 717 18.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DQJ RELATED DB: PDB REMARK 900 RELATED ID: 1DQQ RELATED DB: PDB REMARK 900 RELATED ID: 1DQM RELATED DB: PDB REMARK 900 RELATED ID: 1NBY RELATED DB: PDB REMARK 900 RELATED ID: 1NDG RELATED DB: PDB REMARK 900 RELATED ID: 1NDM RELATED DB: PDB DBREF 1NBZ A 1 214 GB 13359425 BAB33408 1 214 DBREF 1NBZ B 415 510 UNP P01865 GCAM_MOUSE 1 96 DBREF 1NBZ C 601 729 UNP P00698 LYSC_CHICK 19 147 SEQADV 1NBZ ASP A 1 UNP 13359425 GLU 1 CLONING ARTIFACT SEQADV 1NBZ ILE A 2 UNP 13359425 LEU 2 CLONING ARTIFACT SEQADV 1NBZ LEU A 4 UNP 13359425 MET 4 CLONING ARTIFACT SEQADV 1NBZ ALA C 697 UNP P00698 LYS 115 ENGINEERED MUTATION SEQRES 1 A 214 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 A 214 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 A 214 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 A 214 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 214 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 214 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 A 214 ASN SER TRP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU CYS SEQRES 1 B 210 GLU VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 B 210 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 B 210 ASP SER VAL THR SER ASP TYR TRP SER TRP ILE ARG LYS SEQRES 4 B 210 PHE PRO GLY ASN LYS LEU GLU TYR MET GLY TYR ILE SER SEQRES 5 B 210 TYR SER GLY SER THR TYR TYR HIS PRO SER LEU LYS SER SEQRES 6 B 210 ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN TYR SEQRES 7 B 210 TYR LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA SEQRES 8 B 210 THR TYR TYR CYS ALA SER TRP GLY GLY ASP VAL TRP GLY SEQRES 9 B 210 ALA GLY THR THR VAL THR VAL SER SER ALA LYS THR THR SEQRES 10 B 210 ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP SEQRES 11 B 210 THR THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS SEQRES 12 B 210 GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER SEQRES 13 B 210 GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 14 B 210 LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR SEQRES 15 B 210 VAL THR SER SER THR TRP PRO SER GLN SER ILE THR CYS SEQRES 16 B 210 ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS SEQRES 17 B 210 LYS ILE SEQRES 1 C 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 C 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 C 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 C 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 C 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 C 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 C 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 C 129 VAL ASN CYS ALA LYS ALA ILE VAL SER ASP GLY ASN GLY SEQRES 9 C 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 C 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 4 HOH *517(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 PRO B 361 LYS B 364 5 4 HELIX 5 5 THR B 386 THR B 390 5 5 HELIX 6 6 PRO B 426 ASP B 430 5 5 HELIX 7 7 SER B 456 SER B 458 5 3 HELIX 8 8 PRO B 500 SER B 503 5 4 HELIX 9 9 GLY C 604 HIS C 615 1 12 HELIX 10 10 ASN C 619 TYR C 623 5 5 HELIX 11 11 SER C 624 ASN C 637 1 14 HELIX 12 12 PRO C 679 SER C 685 5 7 HELIX 13 13 ILE C 688 SER C 700 1 13 HELIX 14 14 ASN C 703 ALA C 707 5 5 HELIX 15 15 TRP C 708 CYS C 715 1 8 HELIX 16 16 ASP C 719 ILE C 724 5 6 SHEET 1 A 3 LEU A 4 SER A 7 0 SHEET 2 A 3 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 3 ASP A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 1 B 5 GLN A 53 SER A 54 0 SHEET 2 B 5 ARG A 45 LYS A 49 -1 N LYS A 49 O GLN A 53 SHEET 3 B 5 LEU A 33 GLN A 38 -1 N TRP A 35 O LEU A 47 SHEET 4 B 5 GLY A 84 GLN A 90 -1 O PHE A 87 N TYR A 36 SHEET 5 B 5 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 C 6 GLN A 53 SER A 54 0 SHEET 2 C 6 ARG A 45 LYS A 49 -1 N LYS A 49 O GLN A 53 SHEET 3 C 6 LEU A 33 GLN A 38 -1 N TRP A 35 O LEU A 47 SHEET 4 C 6 GLY A 84 GLN A 90 -1 O PHE A 87 N TYR A 36 SHEET 5 C 6 THR A 102 ILE A 106 -1 O LEU A 104 N GLY A 84 SHEET 6 C 6 THR A 10 VAL A 13 1 N LEU A 11 O GLU A 105 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 E 4 SER A 153 ARG A 155 0 SHEET 2 E 4 ILE A 144 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 E 4 SER A 191 HIS A 198 -1 SHEET 4 E 4 ILE A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 F 4 GLN B 303 SER B 307 0 SHEET 2 F 4 LEU B 318 THR B 325 -1 O THR B 321 N SER B 307 SHEET 3 F 4 GLN B 377 LEU B 382 -1 O LEU B 382 N LEU B 318 SHEET 4 F 4 ILE B 367 ASP B 372 -1 N THR B 370 O TYR B 379 SHEET 1 G 6 LEU B 311 VAL B 312 0 SHEET 2 G 6 THR B 407 VAL B 411 1 O THR B 410 N VAL B 312 SHEET 3 G 6 ALA B 391 SER B 397 -1 N TYR B 393 O THR B 407 SHEET 4 G 6 TRP B 334 LYS B 339 -1 N SER B 335 O ALA B 396 SHEET 5 G 6 LEU B 345 ILE B 351 -1 O GLU B 346 N ARG B 338 SHEET 6 G 6 THR B 357 TYR B 359 -1 O TYR B 358 N TYR B 350 SHEET 1 H 4 SER B 420 LEU B 424 0 SHEET 2 H 4 SER B 435 TYR B 445 -1 O LEU B 441 N TYR B 422 SHEET 3 H 4 LEU B 474 THR B 484 -1 O LEU B 477 N VAL B 442 SHEET 4 H 4 VAL B 463 THR B 465 -1 N HIS B 464 O SER B 480 SHEET 1 I 4 SER B 420 LEU B 424 0 SHEET 2 I 4 SER B 435 TYR B 445 -1 O LEU B 441 N TYR B 422 SHEET 3 I 4 LEU B 474 THR B 484 -1 O LEU B 477 N VAL B 442 SHEET 4 I 4 VAL B 469 GLN B 471 -1 N GLN B 471 O LEU B 474 SHEET 1 J 3 THR B 451 TRP B 454 0 SHEET 2 J 3 THR B 494 HIS B 499 -1 O ASN B 496 N THR B 453 SHEET 3 J 3 THR B 504 LYS B 509 -1 O VAL B 506 N VAL B 497 SHEET 1 K 3 THR C 643 ARG C 645 0 SHEET 2 K 3 THR C 651 TYR C 653 -1 O ASP C 652 N ASN C 644 SHEET 3 K 3 ILE C 658 ASN C 659 -1 O ILE C 658 N TYR C 653 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS A 214 CYS B 428 1555 1555 1.87 SSBOND 4 CYS B 322 CYS B 395 1555 1555 2.04 SSBOND 5 CYS B 440 CYS B 495 1555 1555 2.03 SSBOND 6 CYS C 606 CYS C 727 1555 1555 2.03 SSBOND 7 CYS C 630 CYS C 715 1555 1555 2.03 SSBOND 8 CYS C 664 CYS C 680 1555 1555 2.03 SSBOND 9 CYS C 676 CYS C 694 1555 1555 2.04 CISPEP 1 SER A 7 PRO A 8 0 -0.23 CISPEP 2 TRP A 94 PRO A 95 0 0.41 CISPEP 3 TYR A 140 PRO A 141 0 -0.85 CISPEP 4 ASN A 212 GLU A 213 0 -24.53 CISPEP 5 PHE B 446 PRO B 447 0 0.27 CISPEP 6 GLU B 448 PRO B 449 0 0.38 CISPEP 7 TRP B 488 PRO B 489 0 -0.75 CISPEP 8 LYS C 716 GLY C 717 0 29.38 CRYST1 90.903 90.903 151.184 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006614 0.00000