data_1NDP # _entry.id 1NDP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NDP pdb_00001ndp 10.2210/pdb1ndp/pdb WWPDB D_1000175250 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-04-30 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NDP _pdbx_database_status.recvd_initial_deposition_date 1993-11-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Janin, J.' 1 'Morera, S.' 2 'Dumas, C.' 3 'Lascu, I.' 4 'Lebras, G.' 5 'Veron, M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Adenosine 5'-diphosphate binding and the active site of nucleoside diphosphate kinase. ; Biochemistry 33 459 467 1994 BICHAW US 0006-2960 0033 ? 8286376 10.1021/bi00168a010 1 'X-Ray Structure of Awd Nucleoside Diphosphate Kinase from Drosophila' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 2 'X-Ray Structure of Nucleoside Diphosphate Kinase' 'Embo J.' 11 3203 ? 1992 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morera, S.' 1 ? primary 'Lascu, I.' 2 ? primary 'Dumas, C.' 3 ? primary 'LeBras, G.' 4 ? primary 'Briozzo, P.' 5 ? primary 'Veron, M.' 6 ? primary 'Janin, J.' 7 ? 1 'Chiadmi, M.' 8 ? 1 'Morera, S.' 9 ? 1 'Dumas, C.' 10 ? 1 'Lebras, G.' 11 ? 1 'Lascu, I.' 12 ? 1 'Veron, M.' 13 ? 1 'Janin, J.' 14 ? 2 'Dumas, C.' 15 ? 2 'Lascu, I.' 16 ? 2 'Morera, S.' 17 ? 2 'Glaser, P.' 18 ? 2 'Fourme, R.' 19 ? 2 'Wallet, V.' 20 ? 2 'Lacombe, M.L.' 21 ? 2 'Veron, M.' 22 ? 2 'Janin, J.' 23 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NUCLEOSIDE DIPHOSPHATE KINASE' 16816.336 2 2.7.4.6 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 158 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE ; _entity_poly.pdbx_seq_one_letter_code_can ;MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 THR n 1 4 ASN n 1 5 LYS n 1 6 VAL n 1 7 ASN n 1 8 LYS n 1 9 GLU n 1 10 ARG n 1 11 THR n 1 12 PHE n 1 13 LEU n 1 14 ALA n 1 15 VAL n 1 16 LYS n 1 17 PRO n 1 18 ASP n 1 19 GLY n 1 20 VAL n 1 21 ALA n 1 22 ARG n 1 23 GLY n 1 24 LEU n 1 25 VAL n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ILE n 1 30 ALA n 1 31 ARG n 1 32 TYR n 1 33 GLU n 1 34 LYS n 1 35 LYS n 1 36 GLY n 1 37 PHE n 1 38 VAL n 1 39 LEU n 1 40 VAL n 1 41 GLY n 1 42 LEU n 1 43 LYS n 1 44 GLN n 1 45 LEU n 1 46 VAL n 1 47 PRO n 1 48 THR n 1 49 LYS n 1 50 ASP n 1 51 LEU n 1 52 ALA n 1 53 GLU n 1 54 SER n 1 55 HIS n 1 56 TYR n 1 57 ALA n 1 58 GLU n 1 59 HIS n 1 60 LYS n 1 61 GLU n 1 62 ARG n 1 63 PRO n 1 64 PHE n 1 65 PHE n 1 66 GLY n 1 67 GLY n 1 68 LEU n 1 69 VAL n 1 70 SER n 1 71 PHE n 1 72 ILE n 1 73 THR n 1 74 SER n 1 75 GLY n 1 76 PRO n 1 77 VAL n 1 78 VAL n 1 79 ALA n 1 80 MET n 1 81 VAL n 1 82 PHE n 1 83 GLU n 1 84 GLY n 1 85 LYS n 1 86 GLY n 1 87 VAL n 1 88 VAL n 1 89 ALA n 1 90 SER n 1 91 ALA n 1 92 ARG n 1 93 LEU n 1 94 MET n 1 95 ILE n 1 96 GLY n 1 97 VAL n 1 98 THR n 1 99 ASN n 1 100 PRO n 1 101 LEU n 1 102 ALA n 1 103 SER n 1 104 ALA n 1 105 PRO n 1 106 GLY n 1 107 SER n 1 108 ILE n 1 109 ARG n 1 110 GLY n 1 111 ASP n 1 112 PHE n 1 113 GLY n 1 114 VAL n 1 115 ASP n 1 116 VAL n 1 117 GLY n 1 118 ARG n 1 119 ASN n 1 120 ILE n 1 121 ILE n 1 122 HIS n 1 123 GLY n 1 124 SER n 1 125 ASP n 1 126 SER n 1 127 VAL n 1 128 GLU n 1 129 SER n 1 130 ALA n 1 131 ASN n 1 132 ARG n 1 133 GLU n 1 134 ILE n 1 135 ALA n 1 136 LEU n 1 137 TRP n 1 138 PHE n 1 139 LYS n 1 140 PRO n 1 141 GLU n 1 142 GLU n 1 143 LEU n 1 144 LEU n 1 145 THR n 1 146 GLU n 1 147 VAL n 1 148 LYS n 1 149 PRO n 1 150 ASN n 1 151 PRO n 1 152 ASN n 1 153 LEU n 1 154 TYR n 1 155 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Dictyostelium _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dictyostelium discoideum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 44689 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 MET 94 94 94 MET MET A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 GLU 155 155 155 GLU GLU A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 ASN 4 4 ? ? ? B . n B 1 5 LYS 5 5 ? ? ? B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 ASN 7 7 7 ASN ASN B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 PHE 12 12 12 PHE PHE B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 VAL 25 25 25 VAL VAL B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 GLU 27 27 27 GLU GLU B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ARG 31 31 31 ARG ARG B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 GLN 44 44 44 GLN GLN B . n B 1 45 LEU 45 45 45 LEU LEU B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 PRO 47 47 47 PRO PRO B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 ASP 50 50 50 ASP ASP B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 HIS 55 55 55 HIS HIS B . n B 1 56 TYR 56 56 56 TYR TYR B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 HIS 59 59 59 HIS HIS B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 ARG 62 62 62 ARG ARG B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 PHE 65 65 65 PHE PHE B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 THR 73 73 73 THR THR B . n B 1 74 SER 74 74 74 SER SER B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 PRO 76 76 76 PRO PRO B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 ALA 79 79 79 ALA ALA B . n B 1 80 MET 80 80 80 MET MET B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 PHE 82 82 82 PHE PHE B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 GLY 84 84 84 GLY GLY B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 ARG 92 92 92 ARG ARG B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 MET 94 94 94 MET MET B . n B 1 95 ILE 95 95 95 ILE ILE B . n B 1 96 GLY 96 96 96 GLY GLY B . n B 1 97 VAL 97 97 97 VAL VAL B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 PRO 100 100 100 PRO PRO B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 SER 103 103 103 SER SER B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 PRO 105 105 105 PRO PRO B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 SER 107 107 107 SER SER B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 ARG 109 109 109 ARG ARG B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 ASP 111 111 111 ASP ASP B . n B 1 112 PHE 112 112 112 PHE PHE B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 VAL 114 114 114 VAL VAL B . n B 1 115 ASP 115 115 115 ASP ASP B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 GLY 117 117 117 GLY GLY B . n B 1 118 ARG 118 118 118 ARG ARG B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 ILE 120 120 120 ILE ILE B . n B 1 121 ILE 121 121 121 ILE ILE B . n B 1 122 HIS 122 122 122 HIS HIS B . n B 1 123 GLY 123 123 123 GLY GLY B . n B 1 124 SER 124 124 124 SER SER B . n B 1 125 ASP 125 125 125 ASP ASP B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 VAL 127 127 127 VAL VAL B . n B 1 128 GLU 128 128 128 GLU GLU B . n B 1 129 SER 129 129 129 SER SER B . n B 1 130 ALA 130 130 130 ALA ALA B . n B 1 131 ASN 131 131 131 ASN ASN B . n B 1 132 ARG 132 132 132 ARG ARG B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 ILE 134 134 134 ILE ILE B . n B 1 135 ALA 135 135 135 ALA ALA B . n B 1 136 LEU 136 136 136 LEU LEU B . n B 1 137 TRP 137 137 137 TRP TRP B . n B 1 138 PHE 138 138 138 PHE PHE B . n B 1 139 LYS 139 139 139 LYS LYS B . n B 1 140 PRO 140 140 140 PRO PRO B . n B 1 141 GLU 141 141 141 GLU GLU B . n B 1 142 GLU 142 142 142 GLU GLU B . n B 1 143 LEU 143 143 143 LEU LEU B . n B 1 144 LEU 144 144 144 LEU LEU B . n B 1 145 THR 145 145 145 THR THR B . n B 1 146 GLU 146 146 146 GLU GLU B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 LYS 148 148 148 LYS LYS B . n B 1 149 PRO 149 149 149 PRO PRO B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 PRO 151 151 151 PRO PRO B . n B 1 152 ASN 152 152 152 ASN ASN B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 TYR 154 154 154 TYR TYR B . n B 1 155 GLU 155 155 155 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP 1 160 160 ADP ADP A . D 3 MG 1 161 161 MG MG B . E 2 ADP 1 160 160 ADP ADP B . F 4 HOH 1 161 257 HOH HOH A . F 4 HOH 2 162 262 HOH HOH A . F 4 HOH 3 163 161 HOH HOH A . F 4 HOH 4 164 200 HOH HOH A . F 4 HOH 5 165 201 HOH HOH A . F 4 HOH 6 166 202 HOH HOH A . F 4 HOH 7 167 203 HOH HOH A . F 4 HOH 8 168 204 HOH HOH A . F 4 HOH 9 169 205 HOH HOH A . F 4 HOH 10 170 206 HOH HOH A . F 4 HOH 11 171 207 HOH HOH A . F 4 HOH 12 172 208 HOH HOH A . F 4 HOH 13 173 209 HOH HOH A . F 4 HOH 14 174 210 HOH HOH A . F 4 HOH 15 175 211 HOH HOH A . F 4 HOH 16 176 212 HOH HOH A . F 4 HOH 17 177 213 HOH HOH A . F 4 HOH 18 178 214 HOH HOH A . F 4 HOH 19 179 215 HOH HOH A . F 4 HOH 20 180 216 HOH HOH A . F 4 HOH 21 181 217 HOH HOH A . F 4 HOH 22 182 218 HOH HOH A . F 4 HOH 23 183 219 HOH HOH A . F 4 HOH 24 184 220 HOH HOH A . F 4 HOH 25 185 221 HOH HOH A . F 4 HOH 26 186 222 HOH HOH A . F 4 HOH 27 187 223 HOH HOH A . F 4 HOH 28 188 224 HOH HOH A . F 4 HOH 29 189 225 HOH HOH A . F 4 HOH 30 190 226 HOH HOH A . F 4 HOH 31 191 227 HOH HOH A . F 4 HOH 32 192 228 HOH HOH A . F 4 HOH 33 193 229 HOH HOH A . F 4 HOH 34 194 230 HOH HOH A . F 4 HOH 35 195 231 HOH HOH A . F 4 HOH 36 196 232 HOH HOH A . F 4 HOH 37 197 233 HOH HOH A . F 4 HOH 38 198 234 HOH HOH A . F 4 HOH 39 199 235 HOH HOH A . F 4 HOH 40 200 236 HOH HOH A . F 4 HOH 41 201 237 HOH HOH A . F 4 HOH 42 202 238 HOH HOH A . F 4 HOH 43 203 239 HOH HOH A . F 4 HOH 44 204 240 HOH HOH A . F 4 HOH 45 205 241 HOH HOH A . F 4 HOH 46 206 242 HOH HOH A . F 4 HOH 47 207 243 HOH HOH A . F 4 HOH 48 208 244 HOH HOH A . F 4 HOH 49 209 245 HOH HOH A . F 4 HOH 50 210 246 HOH HOH A . F 4 HOH 51 211 247 HOH HOH A . F 4 HOH 52 212 248 HOH HOH A . F 4 HOH 53 213 249 HOH HOH A . F 4 HOH 54 214 250 HOH HOH A . F 4 HOH 55 215 251 HOH HOH A . F 4 HOH 56 216 253 HOH HOH A . F 4 HOH 57 217 254 HOH HOH A . F 4 HOH 58 218 255 HOH HOH A . F 4 HOH 59 219 256 HOH HOH A . F 4 HOH 60 220 258 HOH HOH A . F 4 HOH 61 221 259 HOH HOH A . F 4 HOH 62 222 260 HOH HOH A . F 4 HOH 63 223 261 HOH HOH A . F 4 HOH 64 224 263 HOH HOH A . F 4 HOH 65 225 264 HOH HOH A . F 4 HOH 66 226 265 HOH HOH A . F 4 HOH 67 227 242 HOH HOH A . F 4 HOH 68 228 243 HOH HOH A . F 4 HOH 69 229 244 HOH HOH A . F 4 HOH 70 230 247 HOH HOH A . F 4 HOH 71 231 249 HOH HOH A . F 4 HOH 72 232 251 HOH HOH A . F 4 HOH 73 233 252 HOH HOH A . G 4 HOH 1 162 252 HOH HOH B . G 4 HOH 2 163 200 HOH HOH B . G 4 HOH 3 164 201 HOH HOH B . G 4 HOH 4 165 202 HOH HOH B . G 4 HOH 5 166 203 HOH HOH B . G 4 HOH 6 167 204 HOH HOH B . G 4 HOH 7 168 205 HOH HOH B . G 4 HOH 8 169 206 HOH HOH B . G 4 HOH 9 170 207 HOH HOH B . G 4 HOH 10 171 208 HOH HOH B . G 4 HOH 11 172 209 HOH HOH B . G 4 HOH 12 173 210 HOH HOH B . G 4 HOH 13 174 211 HOH HOH B . G 4 HOH 14 175 212 HOH HOH B . G 4 HOH 15 176 213 HOH HOH B . G 4 HOH 16 177 214 HOH HOH B . G 4 HOH 17 178 215 HOH HOH B . G 4 HOH 18 179 216 HOH HOH B . G 4 HOH 19 180 217 HOH HOH B . G 4 HOH 20 181 218 HOH HOH B . G 4 HOH 21 182 219 HOH HOH B . G 4 HOH 22 183 220 HOH HOH B . G 4 HOH 23 184 221 HOH HOH B . G 4 HOH 24 185 222 HOH HOH B . G 4 HOH 25 186 223 HOH HOH B . G 4 HOH 26 187 224 HOH HOH B . G 4 HOH 27 188 225 HOH HOH B . G 4 HOH 28 189 226 HOH HOH B . G 4 HOH 29 190 227 HOH HOH B . G 4 HOH 30 191 228 HOH HOH B . G 4 HOH 31 192 229 HOH HOH B . G 4 HOH 32 193 230 HOH HOH B . G 4 HOH 33 194 231 HOH HOH B . G 4 HOH 34 195 232 HOH HOH B . G 4 HOH 35 196 233 HOH HOH B . G 4 HOH 36 197 234 HOH HOH B . G 4 HOH 37 198 235 HOH HOH B . G 4 HOH 38 199 236 HOH HOH B . G 4 HOH 39 200 237 HOH HOH B . G 4 HOH 40 201 238 HOH HOH B . G 4 HOH 41 202 239 HOH HOH B . G 4 HOH 42 203 240 HOH HOH B . G 4 HOH 43 204 241 HOH HOH B . G 4 HOH 44 205 245 HOH HOH B . G 4 HOH 45 206 246 HOH HOH B . G 4 HOH 46 207 248 HOH HOH B . G 4 HOH 47 208 250 HOH HOH B . G 4 HOH 48 209 253 HOH HOH B . G 4 HOH 49 210 254 HOH HOH B . G 4 HOH 50 211 255 HOH HOH B . G 4 HOH 51 212 256 HOH HOH B . G 4 HOH 52 213 257 HOH HOH B . G 4 HOH 53 214 258 HOH HOH B . G 4 HOH 54 215 259 HOH HOH B . G 4 HOH 55 216 260 HOH HOH B . G 4 HOH 56 217 261 HOH HOH B . G 4 HOH 57 218 262 HOH HOH B . G 4 HOH 58 219 263 HOH HOH B . G 4 HOH 59 220 264 HOH HOH B . G 4 HOH 60 221 265 HOH HOH B . G 4 HOH 61 222 266 HOH HOH B . G 4 HOH 62 223 267 HOH HOH B . G 4 HOH 63 224 268 HOH HOH B . G 4 HOH 64 225 269 HOH HOH B . G 4 HOH 65 226 270 HOH HOH B . G 4 HOH 66 227 271 HOH HOH B . G 4 HOH 67 228 272 HOH HOH B . G 4 HOH 68 229 273 HOH HOH B . G 4 HOH 69 230 274 HOH HOH B . G 4 HOH 70 231 275 HOH HOH B . G 4 HOH 71 232 276 HOH HOH B . G 4 HOH 72 233 277 HOH HOH B . G 4 HOH 73 234 278 HOH HOH B . G 4 HOH 74 235 279 HOH HOH B . G 4 HOH 75 236 280 HOH HOH B . G 4 HOH 76 237 281 HOH HOH B . G 4 HOH 77 238 282 HOH HOH B . G 4 HOH 78 239 283 HOH HOH B . G 4 HOH 79 240 284 HOH HOH B . G 4 HOH 80 241 285 HOH HOH B . G 4 HOH 81 242 286 HOH HOH B . G 4 HOH 82 243 287 HOH HOH B . G 4 HOH 83 244 288 HOH HOH B . G 4 HOH 84 245 289 HOH HOH B . G 4 HOH 85 246 290 HOH HOH B . # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1NDP _cell.length_a 73.180 _cell.length_b 73.180 _cell.length_c 158.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NDP _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # _exptl.entry_id 1NDP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.31 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1NDP _refine.ls_number_reflns_obs 15348 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1930000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2294 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 2507 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.014 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.044 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.050 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.010 0.010 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.109 0.100 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.180 0.300 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1NDP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NDP _struct.title ;ADENOSINE 5'-DIPHOSPHATE BINDING AND THE ACTIVE SITE OF NUCLEOSIDE DIPHOSPHATE KINASE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NDP _struct_keywords.pdbx_keywords PHOSPHOTRANSFERASE _struct_keywords.text PHOSPHOTRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDKC_DICDI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P22887 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NDP A 1 ? 155 ? P22887 1 ? 155 ? 1 155 2 1 1NDP B 1 ? 155 ? P22887 1 ? 155 ? 1 155 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18370 ? 1 MORE -108 ? 1 'SSA (A^2)' 32120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 16 ? ARG A 22 ? LYS A 16 ARG A 22 1 ? 7 HELX_P HELX_P2 2 LEU A 24 ? GLY A 36 ? LEU A 24 GLY A 36 1 ? 13 HELX_P HELX_P3 3 THR A 48 ? TYR A 56 ? THR A 48 TYR A 56 1 ? 9 HELX_P HELX_P4 4 ALA A 57 ? LYS A 60 ? ALA A 57 LYS A 60 5 ? 4 HELX_P HELX_P5 5 PHE A 64 ? SER A 74 ? PHE A 64 SER A 74 1 ? 11 HELX_P HELX_P6 6 GLY A 86 ? GLY A 96 ? GLY A 86 GLY A 96 1 ? 11 HELX_P HELX_P7 7 ASN A 99 ? SER A 103 ? ASN A 99 SER A 103 5 ? 5 HELX_P HELX_P8 8 SER A 107 ? GLY A 113 ? SER A 107 GLY A 113 1 ? 7 HELX_P HELX_P9 9 SER A 126 ? PHE A 138 ? SER A 126 PHE A 138 1 ? 13 HELX_P HELX_P10 10 LYS A 139 ? LEU A 143 ? LYS A 139 LEU A 143 5 ? 5 HELX_P HELX_P11 11 LYS B 16 ? ARG B 22 ? LYS B 16 ARG B 22 1 ? 7 HELX_P HELX_P12 12 LEU B 24 ? GLY B 36 ? LEU B 24 GLY B 36 1 ? 13 HELX_P HELX_P13 13 THR B 48 ? TYR B 56 ? THR B 48 TYR B 56 1 ? 9 HELX_P HELX_P14 14 ALA B 57 ? LYS B 60 ? ALA B 57 LYS B 60 5 ? 4 HELX_P HELX_P15 15 PHE B 64 ? THR B 73 ? PHE B 64 THR B 73 1 ? 10 HELX_P HELX_P16 16 GLY B 86 ? GLY B 96 ? GLY B 86 GLY B 96 1 ? 11 HELX_P HELX_P17 17 SER B 107 ? GLY B 113 ? SER B 107 GLY B 113 1 ? 7 HELX_P HELX_P18 18 ASP B 115 ? ASN B 119 ? ASP B 115 ASN B 119 5 ? 5 HELX_P HELX_P19 19 SER B 126 ? PHE B 138 ? SER B 126 PHE B 138 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E ADP . O1B ? ? ? 1_555 D MG . MG ? ? B ADP 160 B MG 161 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc2 metalc ? ? E ADP . O1A ? ? ? 1_555 D MG . MG ? ? B ADP 160 B MG 161 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 161 B HOH 204 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 161 B HOH 218 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 161 B HOH 220 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 161 B HOH 244 1_555 ? ? ? ? ? ? ? 2.123 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1B ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O1A ? E ADP . ? B ADP 160 ? 1_555 88.9 ? 2 O1B ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 204 ? 1_555 155.9 ? 3 O1A ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 204 ? 1_555 85.2 ? 4 O1B ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 218 ? 1_555 83.0 ? 5 O1A ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 218 ? 1_555 85.3 ? 6 O ? G HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 218 ? 1_555 73.3 ? 7 O1B ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 88.9 ? 8 O1A ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 92.5 ? 9 O ? G HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 114.7 ? 10 O ? G HOH . ? B HOH 218 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 220 ? 1_555 171.6 ? 11 O1B ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 244 ? 1_555 92.8 ? 12 O1A ? E ADP . ? B ADP 160 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 244 ? 1_555 165.0 ? 13 O ? G HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 244 ? 1_555 87.2 ? 14 O ? G HOH . ? B HOH 218 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 244 ? 1_555 80.2 ? 15 O ? G HOH . ? B HOH 220 ? 1_555 MG ? D MG . ? B MG 161 ? 1_555 O ? G HOH . ? B HOH 244 ? 1_555 102.4 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 38 ? LEU A 45 ? VAL A 38 LEU A 45 A 2 VAL A 77 ? GLU A 83 ? VAL A 77 GLU A 83 A 3 ARG A 10 ? VAL A 15 ? ARG A 10 VAL A 15 A 4 ILE A 121 ? GLY A 123 ? ILE A 121 GLY A 123 B 1 VAL B 38 ? LEU B 45 ? VAL B 38 LEU B 45 B 2 VAL B 77 ? GLU B 83 ? VAL B 77 GLU B 83 B 3 ARG B 10 ? VAL B 15 ? ARG B 10 VAL B 15 B 4 ILE B 121 ? GLY B 123 ? ILE B 121 GLY B 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 45 ? O LEU A 45 N VAL A 77 ? N VAL A 77 A 2 3 O PHE A 82 ? O PHE A 82 N THR A 11 ? N THR A 11 A 3 4 N ALA A 14 ? N ALA A 14 O HIS A 122 ? O HIS A 122 B 1 2 O LEU B 45 ? O LEU B 45 N VAL B 77 ? N VAL B 77 B 2 3 O PHE B 82 ? O PHE B 82 N THR B 11 ? N THR B 11 B 3 4 O ALA B 14 ? O ALA B 14 N HIS B 122 ? N HIS B 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 161 ? 5 'BINDING SITE FOR RESIDUE MG B 161' AC2 Software A ADP 160 ? 10 'BINDING SITE FOR RESIDUE ADP A 160' AC3 Software B ADP 160 ? 18 'BINDING SITE FOR RESIDUE ADP B 160' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ADP E . ? ADP B 160 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH B 204 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH B 218 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH B 220 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH B 244 . ? 1_555 ? 6 AC2 10 LYS A 16 ? LYS A 16 . ? 1_555 ? 7 AC2 10 HIS A 59 ? HIS A 59 . ? 1_555 ? 8 AC2 10 PHE A 64 ? PHE A 64 . ? 1_555 ? 9 AC2 10 LEU A 68 ? LEU A 68 . ? 1_555 ? 10 AC2 10 ARG A 92 ? ARG A 92 . ? 1_555 ? 11 AC2 10 THR A 98 ? THR A 98 . ? 1_555 ? 12 AC2 10 ARG A 109 ? ARG A 109 . ? 1_555 ? 13 AC2 10 VAL A 116 ? VAL A 116 . ? 1_555 ? 14 AC2 10 ASN A 119 ? ASN A 119 . ? 1_555 ? 15 AC2 10 HOH F . ? HOH A 163 . ? 1_555 ? 16 AC3 18 LYS B 16 ? LYS B 16 . ? 1_555 ? 17 AC3 18 HIS B 59 ? HIS B 59 . ? 1_555 ? 18 AC3 18 PHE B 64 ? PHE B 64 . ? 1_555 ? 19 AC3 18 LEU B 68 ? LEU B 68 . ? 1_555 ? 20 AC3 18 ARG B 92 ? ARG B 92 . ? 1_555 ? 21 AC3 18 THR B 98 ? THR B 98 . ? 1_555 ? 22 AC3 18 ARG B 109 ? ARG B 109 . ? 1_555 ? 23 AC3 18 VAL B 116 ? VAL B 116 . ? 1_555 ? 24 AC3 18 GLY B 117 ? GLY B 117 . ? 1_555 ? 25 AC3 18 ASN B 119 ? ASN B 119 . ? 1_555 ? 26 AC3 18 MG D . ? MG B 161 . ? 1_555 ? 27 AC3 18 HOH G . ? HOH B 189 . ? 1_555 ? 28 AC3 18 HOH G . ? HOH B 195 . ? 3_555 ? 29 AC3 18 HOH G . ? HOH B 204 . ? 1_555 ? 30 AC3 18 HOH G . ? HOH B 206 . ? 1_555 ? 31 AC3 18 HOH G . ? HOH B 210 . ? 1_555 ? 32 AC3 18 HOH G . ? HOH B 218 . ? 1_555 ? 33 AC3 18 HOH G . ? HOH B 220 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 181 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 232 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH2 A ARG 10 ? ? 116.60 120.30 -3.70 0.50 N 2 1 NE A ARG 22 ? ? CZ A ARG 22 ? ? NH2 A ARG 22 ? ? 124.65 120.30 4.35 0.50 N 3 1 C A PRO 47 ? ? N A THR 48 ? ? CA A THR 48 ? ? 137.84 121.70 16.14 2.50 Y 4 1 CB A TYR 56 ? ? CG A TYR 56 ? ? CD2 A TYR 56 ? ? 116.21 121.00 -4.79 0.60 N 5 1 CB A TYR 56 ? ? CG A TYR 56 ? ? CD1 A TYR 56 ? ? 125.49 121.00 4.49 0.60 N 6 1 CB A VAL 81 ? ? CA A VAL 81 ? ? C A VAL 81 ? ? 124.39 111.40 12.99 1.90 N 7 1 CB A PHE 82 ? ? CG A PHE 82 ? ? CD1 A PHE 82 ? ? 116.27 120.80 -4.53 0.70 N 8 1 N A ALA 104 ? ? CA A ALA 104 ? ? CB A ALA 104 ? ? 101.01 110.10 -9.09 1.40 N 9 1 NE A ARG 109 ? ? CZ A ARG 109 ? ? NH2 A ARG 109 ? ? 116.13 120.30 -4.17 0.50 N 10 1 CB A ASP 111 ? ? CG A ASP 111 ? ? OD1 A ASP 111 ? ? 124.89 118.30 6.59 0.90 N 11 1 N A ASP 115 ? ? CA A ASP 115 ? ? CB A ASP 115 ? ? 98.43 110.60 -12.17 1.80 N 12 1 CB A ASP 115 ? ? CG A ASP 115 ? ? OD2 A ASP 115 ? ? 111.93 118.30 -6.37 0.90 N 13 1 CD A ARG 118 ? ? NE A ARG 118 ? ? CZ A ARG 118 ? ? 104.82 123.60 -18.78 1.40 N 14 1 NH1 A ARG 118 ? ? CZ A ARG 118 ? ? NH2 A ARG 118 ? ? 145.48 119.40 26.08 1.10 N 15 1 NE A ARG 118 ? ? CZ A ARG 118 ? ? NH1 A ARG 118 ? ? 113.10 120.30 -7.20 0.50 N 16 1 NE A ARG 118 ? ? CZ A ARG 118 ? ? NH2 A ARG 118 ? ? 101.37 120.30 -18.93 0.50 N 17 1 OE1 A GLU 128 ? ? CD A GLU 128 ? ? OE2 A GLU 128 ? ? 131.48 123.30 8.18 1.20 N 18 1 O A ASN 131 ? ? C A ASN 131 ? ? N A ARG 132 ? ? 132.70 122.70 10.00 1.60 Y 19 1 CA A LEU 136 ? ? CB A LEU 136 ? ? CG A LEU 136 ? ? 129.53 115.30 14.23 2.30 N 20 1 NE B ARG 22 ? ? CZ B ARG 22 ? ? NH1 B ARG 22 ? ? 126.26 120.30 5.96 0.50 N 21 1 NE B ARG 31 ? ? CZ B ARG 31 ? ? NH2 B ARG 31 ? ? 113.64 120.30 -6.66 0.50 N 22 1 NE B ARG 62 ? ? CZ B ARG 62 ? ? NH2 B ARG 62 ? ? 124.82 120.30 4.52 0.50 N 23 1 CB B VAL 81 ? ? CA B VAL 81 ? ? C B VAL 81 ? ? 124.05 111.40 12.65 1.90 N 24 1 CB B ALA 89 ? ? CA B ALA 89 ? ? C B ALA 89 ? ? 119.21 110.10 9.11 1.50 N 25 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH1 B ARG 109 ? ? 116.93 120.30 -3.37 0.50 N 26 1 CB B ASP 111 ? ? CG B ASP 111 ? ? OD1 B ASP 111 ? ? 123.81 118.30 5.51 0.90 N 27 1 CD B ARG 118 ? ? NE B ARG 118 ? ? CZ B ARG 118 ? ? 158.28 123.60 34.68 1.40 N 28 1 NE B ARG 118 ? ? CZ B ARG 118 ? ? NH1 B ARG 118 ? ? 114.49 120.30 -5.81 0.50 N 29 1 CB B ASP 125 ? ? CG B ASP 125 ? ? OD1 B ASP 125 ? ? 126.60 118.30 8.30 0.90 N 30 1 NE B ARG 132 ? ? CZ B ARG 132 ? ? NH2 B ARG 132 ? ? 123.68 120.30 3.38 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 7 ? ? 88.84 -26.88 2 1 ASN A 119 ? ? -98.05 35.76 3 1 ILE A 120 ? ? 54.34 -41.17 4 1 ASN B 7 ? ? 176.05 -2.21 5 1 ASN B 119 ? ? -86.66 34.32 6 1 ILE B 120 ? ? 46.53 -30.46 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 22 ? ? 0.092 'SIDE CHAIN' 2 1 ARG A 92 ? ? 0.102 'SIDE CHAIN' 3 1 ARG A 118 ? ? 0.345 'SIDE CHAIN' 4 1 ARG A 132 ? ? 0.143 'SIDE CHAIN' 5 1 ARG B 118 ? ? 0.091 'SIDE CHAIN' # _pdbx_entry_details.entry_id 1NDP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;A MG++ ION (MG B 161) IS ASSOCIATED WITH ADP IN CHAIN B. IN CHAIN A, THE CORRESPONDING DENSITY IS WEAK AND HAS BEEN ATTRIBUTED TO A WATER MOLECULE LABELLED HOH A 161 FOR CONSISTENCY. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 B MET 1 ? B MET 1 7 1 Y 1 B SER 2 ? B SER 2 8 1 Y 1 B THR 3 ? B THR 3 9 1 Y 1 B ASN 4 ? B ASN 4 10 1 Y 1 B LYS 5 ? B LYS 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 MG MG MG N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 GLN N CA sing N N 114 GLN N H sing N N 115 GLN N H2 sing N N 116 GLN CA C sing N N 117 GLN CA CB sing N N 118 GLN CA HA sing N N 119 GLN C O doub N N 120 GLN C OXT sing N N 121 GLN CB CG sing N N 122 GLN CB HB2 sing N N 123 GLN CB HB3 sing N N 124 GLN CG CD sing N N 125 GLN CG HG2 sing N N 126 GLN CG HG3 sing N N 127 GLN CD OE1 doub N N 128 GLN CD NE2 sing N N 129 GLN NE2 HE21 sing N N 130 GLN NE2 HE22 sing N N 131 GLN OXT HXT sing N N 132 GLU N CA sing N N 133 GLU N H sing N N 134 GLU N H2 sing N N 135 GLU CA C sing N N 136 GLU CA CB sing N N 137 GLU CA HA sing N N 138 GLU C O doub N N 139 GLU C OXT sing N N 140 GLU CB CG sing N N 141 GLU CB HB2 sing N N 142 GLU CB HB3 sing N N 143 GLU CG CD sing N N 144 GLU CG HG2 sing N N 145 GLU CG HG3 sing N N 146 GLU CD OE1 doub N N 147 GLU CD OE2 sing N N 148 GLU OE2 HE2 sing N N 149 GLU OXT HXT sing N N 150 GLY N CA sing N N 151 GLY N H sing N N 152 GLY N H2 sing N N 153 GLY CA C sing N N 154 GLY CA HA2 sing N N 155 GLY CA HA3 sing N N 156 GLY C O doub N N 157 GLY C OXT sing N N 158 GLY OXT HXT sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 PHE N CA sing N N 268 PHE N H sing N N 269 PHE N H2 sing N N 270 PHE CA C sing N N 271 PHE CA CB sing N N 272 PHE CA HA sing N N 273 PHE C O doub N N 274 PHE C OXT sing N N 275 PHE CB CG sing N N 276 PHE CB HB2 sing N N 277 PHE CB HB3 sing N N 278 PHE CG CD1 doub Y N 279 PHE CG CD2 sing Y N 280 PHE CD1 CE1 sing Y N 281 PHE CD1 HD1 sing N N 282 PHE CD2 CE2 doub Y N 283 PHE CD2 HD2 sing N N 284 PHE CE1 CZ doub Y N 285 PHE CE1 HE1 sing N N 286 PHE CE2 CZ sing Y N 287 PHE CE2 HE2 sing N N 288 PHE CZ HZ sing N N 289 PHE OXT HXT sing N N 290 PRO N CA sing N N 291 PRO N CD sing N N 292 PRO N H sing N N 293 PRO CA C sing N N 294 PRO CA CB sing N N 295 PRO CA HA sing N N 296 PRO C O doub N N 297 PRO C OXT sing N N 298 PRO CB CG sing N N 299 PRO CB HB2 sing N N 300 PRO CB HB3 sing N N 301 PRO CG CD sing N N 302 PRO CG HG2 sing N N 303 PRO CG HG3 sing N N 304 PRO CD HD2 sing N N 305 PRO CD HD3 sing N N 306 PRO OXT HXT sing N N 307 SER N CA sing N N 308 SER N H sing N N 309 SER N H2 sing N N 310 SER CA C sing N N 311 SER CA CB sing N N 312 SER CA HA sing N N 313 SER C O doub N N 314 SER C OXT sing N N 315 SER CB OG sing N N 316 SER CB HB2 sing N N 317 SER CB HB3 sing N N 318 SER OG HG sing N N 319 SER OXT HXT sing N N 320 THR N CA sing N N 321 THR N H sing N N 322 THR N H2 sing N N 323 THR CA C sing N N 324 THR CA CB sing N N 325 THR CA HA sing N N 326 THR C O doub N N 327 THR C OXT sing N N 328 THR CB OG1 sing N N 329 THR CB CG2 sing N N 330 THR CB HB sing N N 331 THR OG1 HG1 sing N N 332 THR CG2 HG21 sing N N 333 THR CG2 HG22 sing N N 334 THR CG2 HG23 sing N N 335 THR OXT HXT sing N N 336 TRP N CA sing N N 337 TRP N H sing N N 338 TRP N H2 sing N N 339 TRP CA C sing N N 340 TRP CA CB sing N N 341 TRP CA HA sing N N 342 TRP C O doub N N 343 TRP C OXT sing N N 344 TRP CB CG sing N N 345 TRP CB HB2 sing N N 346 TRP CB HB3 sing N N 347 TRP CG CD1 doub Y N 348 TRP CG CD2 sing Y N 349 TRP CD1 NE1 sing Y N 350 TRP CD1 HD1 sing N N 351 TRP CD2 CE2 doub Y N 352 TRP CD2 CE3 sing Y N 353 TRP NE1 CE2 sing Y N 354 TRP NE1 HE1 sing N N 355 TRP CE2 CZ2 sing Y N 356 TRP CE3 CZ3 doub Y N 357 TRP CE3 HE3 sing N N 358 TRP CZ2 CH2 doub Y N 359 TRP CZ2 HZ2 sing N N 360 TRP CZ3 CH2 sing Y N 361 TRP CZ3 HZ3 sing N N 362 TRP CH2 HH2 sing N N 363 TRP OXT HXT sing N N 364 TYR N CA sing N N 365 TYR N H sing N N 366 TYR N H2 sing N N 367 TYR CA C sing N N 368 TYR CA CB sing N N 369 TYR CA HA sing N N 370 TYR C O doub N N 371 TYR C OXT sing N N 372 TYR CB CG sing N N 373 TYR CB HB2 sing N N 374 TYR CB HB3 sing N N 375 TYR CG CD1 doub Y N 376 TYR CG CD2 sing Y N 377 TYR CD1 CE1 sing Y N 378 TYR CD1 HD1 sing N N 379 TYR CD2 CE2 doub Y N 380 TYR CD2 HD2 sing N N 381 TYR CE1 CZ doub Y N 382 TYR CE1 HE1 sing N N 383 TYR CE2 CZ sing Y N 384 TYR CE2 HE2 sing N N 385 TYR CZ OH sing N N 386 TYR OH HH sing N N 387 TYR OXT HXT sing N N 388 VAL N CA sing N N 389 VAL N H sing N N 390 VAL N H2 sing N N 391 VAL CA C sing N N 392 VAL CA CB sing N N 393 VAL CA HA sing N N 394 VAL C O doub N N 395 VAL C OXT sing N N 396 VAL CB CG1 sing N N 397 VAL CB CG2 sing N N 398 VAL CB HB sing N N 399 VAL CG1 HG11 sing N N 400 VAL CG1 HG12 sing N N 401 VAL CG1 HG13 sing N N 402 VAL CG2 HG21 sing N N 403 VAL CG2 HG22 sing N N 404 VAL CG2 HG23 sing N N 405 VAL OXT HXT sing N N 406 # _atom_sites.entry_id 1NDP _atom_sites.fract_transf_matrix[1][1] 0.013665 _atom_sites.fract_transf_matrix[1][2] 0.007889 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006311 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_