data_1NGU # _entry.id 1NGU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NGU pdb_00001ngu 10.2210/pdb1ngu/pdb RCSB RCSB017855 ? ? WWPDB D_1000017855 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1NGO _pdbx_database_related.details ;NMR Structure of Putative 3' Terminator for B. Anthracis pagA Gene Coding Strand ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NGU _pdbx_database_status.recvd_initial_deposition_date 2002-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shiflett, P.R.' 1 'Taylor-McCabe, K.J.' 2 'Michalczyk, R.' 3 'Silks, L.A.' 4 'Gupta, G.' 5 # _citation.id primary _citation.title ;Structural Studies on the Hairpins at the 3' Untranslated Region of an Anthrax Toxin Gene ; _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 6078 _citation.page_last 6089 _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12755609 _citation.pdbx_database_id_DOI 10.1021/bi034128f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shiflett, P.R.' 1 ? primary 'Taylor-McCabe, K.J.' 2 ? primary 'Michalczyk, R.' 3 ? primary 'Silks, L.A.' 4 ? primary 'Gupta, G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*TP*CP*TP*CP*CP*TP*TP*GP*TP*AP*TP*TP*TP*CP*TP*TP*AP*CP*AP*AP*AP*AP*AP*GP*AP*G)-3'" _entity.formula_weight 8225.333 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;3' UTR hairpin of pagA gene, noncoding strand ; # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DT)(DC)(DT)(DC)(DC)(DT)(DT)(DG)(DT)(DA)(DT)(DT)(DT)(DC)(DT)(DT)(DA)(DC)(DA) (DA)(DA)(DA)(DA)(DG)(DA)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can CTCTCCTTGTATTTCTTACAAAAAGAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DT n 1 11 DA n 1 12 DT n 1 13 DT n 1 14 DT n 1 15 DC n 1 16 DT n 1 17 DT n 1 18 DA n 1 19 DC n 1 20 DA n 1 21 DA n 1 22 DA n 1 23 DA n 1 24 DA n 1 25 DG n 1 26 DA n 1 27 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence occurs on the noncoding strand of the 3' UTR of the pagA (110) gene of Bacillus anthracis. ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1NGU _struct_ref.pdbx_db_accession 1NGU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NGU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1NGU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 27 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 1 '2D NOESY' 3 2 1 '2D TOCSY' 4 2 1 DQF-COSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '150mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM 110NC DNA; 10mM phosphate buffer pH 6.5; 150mM NaCl;' '90% H2O/10% D2O' 2 '2mM 110NC DNA; 10mM phosphate buffer pH 6.5; 150mM NaCl;' '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1NGU _pdbx_nmr_refine.method ;minimization molecular dynamics ; _pdbx_nmr_refine.details ;Structure is derived from 206 NOEs of which, 23 NOEs involvE exchangeable protons in the stem, 131 NOEs involve non-exchangeable protons in the stem, 52 NOEs involve non-exchangeable protons in the loop, 46 Distance restraints involve hydrogen bonds, and 44 dihedral angle restraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1NGU _pdbx_nmr_details.text 'The structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_ensemble.entry_id 1NGU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'Submitted conformers include minimized average from molecular dynamics and 4 representative diverging structures.' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1NGU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 98 'data analysis' Biosym 1 Amber 4.1 'structure solution' ;Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.S., Cheatham, T.E., Ferguson, D.M., Seibel, G.L., Singh, U.C., Weiner, P.K., and Kollman, P.A. ; 2 Amber 4.1 refinement ;Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.S., Cheatham, T.E., Ferguson, D.M., Seibel, G.L., Singh, U.C., Weiner, P.K., and Kollman, P.A. ; 3 # _exptl.entry_id 1NGU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1NGU _struct.title ;NMR Structure of Putative 3'Terminator for B. Anthracis pagA Gene Noncoding Strand ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1NGU _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-Form DNA Hairpin, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 27 N1 ? ? A DC 1 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 27 O6 ? ? A DC 1 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 27 N2 ? ? A DC 1 A DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 26 N1 ? ? A DT 2 A DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 26 N6 ? ? A DT 2 A DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 25 N1 ? ? A DC 3 A DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 25 O6 ? ? A DC 3 A DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 25 N2 ? ? A DC 3 A DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 24 N1 ? ? A DT 4 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 24 N6 ? ? A DT 4 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DA 23 N6 ? ? A DC 5 A DA 23 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DA 22 N6 ? ? A DC 6 A DA 22 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog13 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 20 N1 ? ? A DT 8 A DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 20 N6 ? ? A DT 8 A DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 19 N3 ? ? A DG 9 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 19 O2 ? ? A DG 9 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 19 N4 ? ? A DG 9 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 18 N1 ? ? A DT 10 A DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 18 N6 ? ? A DT 10 A DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 11 N1 ? ? ? 1_555 A DT 17 N3 ? ? A DA 11 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N6 ? ? ? 1_555 A DT 17 O4 ? ? A DA 11 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1NGU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NGU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _database_PDB_caveat.text 'Chirality error at C 15 in Chain A' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DT 13 13 13 DT T A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DC 15 15 15 DC C A . n A 1 16 DT 16 16 16 DT T A . n A 1 17 DT 17 17 17 DT T A . n A 1 18 DA 18 18 18 DA A A . n A 1 19 DC 19 19 19 DC C A . n A 1 20 DA 20 20 20 DA A A . n A 1 21 DA 21 21 21 DA A A . n A 1 22 DA 22 22 22 DA A A . n A 1 23 DA 23 23 23 DA A A . n A 1 24 DA 24 24 24 DA A A . n A 1 25 DG 25 25 25 DG G A . n A 1 26 DA 26 26 26 DA A A . n A 1 27 DG 27 27 27 DG G A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-10 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.94 108.30 2.64 0.30 N 2 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.99 108.30 2.69 0.30 N 3 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.12 108.30 2.82 0.30 N 4 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.26 108.30 4.96 0.30 N 5 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.53 108.30 3.23 0.30 N 6 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.66 108.30 3.36 0.30 N 7 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.10 108.30 3.80 0.30 N 8 1 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 112.86 108.30 4.56 0.30 N 9 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.39 108.30 3.09 0.30 N 10 1 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.14 122.90 -3.76 0.60 N 11 1 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.45 108.30 2.15 0.30 N 12 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 114.13 108.30 5.83 0.30 N 13 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 118.47 122.90 -4.43 0.60 N 14 1 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 116.35 108.30 8.05 0.30 N 15 1 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 110.97 108.30 2.67 0.30 N 16 1 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.24 122.90 -3.66 0.60 N 17 1 "O4'" A DA 20 ? ? "C1'" A DA 20 ? ? N9 A DA 20 ? ? 111.20 108.30 2.90 0.30 N 18 1 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.57 108.30 2.27 0.30 N 19 1 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 110.53 108.30 2.23 0.30 N 20 1 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 110.46 108.30 2.16 0.30 N 21 1 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 112.09 108.30 3.79 0.30 N 22 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.27 108.30 1.97 0.30 N 23 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.67 108.30 2.37 0.30 N 24 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.44 108.30 2.14 0.30 N 25 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.64 108.30 3.34 0.30 N 26 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.23 122.90 -3.67 0.60 N 27 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.15 108.30 1.85 0.30 N 28 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.64 108.30 4.34 0.30 N 29 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.19 108.30 2.89 0.30 N 30 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.91 108.30 2.61 0.30 N 31 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.17 108.30 1.87 0.30 N 32 2 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 112.63 108.30 4.33 0.30 N 33 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.99 108.30 2.69 0.30 N 34 2 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.06 108.30 2.76 0.30 N 35 2 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.89 108.30 5.59 0.30 N 36 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 117.20 122.90 -5.70 0.60 N 37 2 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 116.96 108.30 8.66 0.30 N 38 2 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.95 118.90 4.05 0.60 N 39 2 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.24 122.90 -3.66 0.60 N 40 2 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.35 108.30 2.05 0.30 N 41 2 "O4'" A DA 20 ? ? "C1'" A DA 20 ? ? N9 A DA 20 ? ? 111.32 108.30 3.02 0.30 N 42 2 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 110.34 108.30 2.04 0.30 N 43 2 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 111.51 108.30 3.21 0.30 N 44 2 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 112.00 108.30 3.70 0.30 N 45 2 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 112.21 108.30 3.91 0.30 N 46 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.13 108.30 1.83 0.30 N 47 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.13 108.30 2.83 0.30 N 48 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.12 108.30 3.82 0.30 N 49 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.10 108.30 3.80 0.30 N 50 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.80 108.30 3.50 0.30 N 51 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.39 108.30 3.09 0.30 N 52 3 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 113.68 108.30 5.38 0.30 N 53 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.83 108.30 2.53 0.30 N 54 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.24 122.90 -3.66 0.60 N 55 3 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.47 108.30 5.17 0.30 N 56 3 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 118.09 122.90 -4.81 0.60 N 57 3 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 116.00 108.30 7.70 0.30 N 58 3 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.62 118.90 3.72 0.60 N 59 3 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 111.10 108.30 2.80 0.30 N 60 3 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.14 108.30 1.84 0.30 N 61 3 "O4'" A DA 20 ? ? "C1'" A DA 20 ? ? N9 A DA 20 ? ? 111.10 108.30 2.80 0.30 N 62 3 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 111.12 108.30 2.82 0.30 N 63 3 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.35 108.30 3.05 0.30 N 64 3 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 110.27 108.30 1.97 0.30 N 65 3 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 111.59 108.30 3.29 0.30 N 66 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.22 108.30 2.92 0.30 N 67 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.48 108.30 2.18 0.30 N 68 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.05 108.30 3.75 0.30 N 69 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.64 108.30 3.34 0.30 N 70 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.45 108.30 3.15 0.30 N 71 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.56 108.30 3.26 0.30 N 72 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.91 108.30 3.61 0.30 N 73 4 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 112.77 108.30 4.47 0.30 N 74 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.25 108.30 1.95 0.30 N 75 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.18 122.90 -3.72 0.60 N 76 4 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.87 108.30 5.57 0.30 N 77 4 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 117.66 122.90 -5.24 0.60 N 78 4 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 116.41 108.30 8.11 0.30 N 79 4 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.64 118.90 3.74 0.60 N 80 4 "O4'" A DA 20 ? ? "C1'" A DA 20 ? ? N9 A DA 20 ? ? 111.36 108.30 3.06 0.30 N 81 4 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 110.61 108.30 2.31 0.30 N 82 4 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.73 108.30 2.43 0.30 N 83 4 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.05 108.30 2.75 0.30 N 84 4 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 110.62 108.30 2.32 0.30 N 85 4 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 111.93 108.30 3.63 0.30 N 86 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.91 108.30 2.61 0.30 N 87 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.11 108.30 3.81 0.30 N 88 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.65 108.30 3.35 0.30 N 89 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.71 108.30 3.41 0.30 N 90 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.00 108.30 2.70 0.30 N 91 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.67 108.30 3.37 0.30 N 92 5 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 113.01 108.30 4.71 0.30 N 93 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.84 108.30 2.54 0.30 N 94 5 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.25 122.90 -3.65 0.60 N 95 5 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.85 108.30 2.55 0.30 N 96 5 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.84 108.30 5.54 0.30 N 97 5 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 117.62 122.90 -5.28 0.60 N 98 5 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 118.07 108.30 9.77 0.30 N 99 5 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.83 118.90 3.93 0.60 N 100 5 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.39 108.30 2.09 0.30 N 101 5 "O4'" A DA 20 ? ? "C1'" A DA 20 ? ? N9 A DA 20 ? ? 111.09 108.30 2.79 0.30 N 102 5 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.78 108.30 2.48 0.30 N 103 5 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.15 108.30 2.85 0.30 N 104 5 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 111.86 108.30 3.56 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.063 'SIDE CHAIN' 2 1 DT A 14 ? ? 0.085 'SIDE CHAIN' 3 1 DA A 20 ? ? 0.067 'SIDE CHAIN' 4 2 DT A 14 ? ? 0.060 'SIDE CHAIN' 5 2 DT A 16 ? ? 0.071 'SIDE CHAIN' 6 2 DA A 20 ? ? 0.071 'SIDE CHAIN' 7 3 DC A 6 ? ? 0.065 'SIDE CHAIN' 8 3 DA A 20 ? ? 0.077 'SIDE CHAIN' 9 4 DT A 10 ? ? 0.062 'SIDE CHAIN' 10 4 DA A 11 ? ? 0.071 'SIDE CHAIN' 11 4 DT A 14 ? ? 0.066 'SIDE CHAIN' 12 4 DA A 20 ? ? 0.088 'SIDE CHAIN' 13 5 DA A 20 ? ? 0.070 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C1'" ? A DC 15 ? 'WRONG HAND' . 2 2 "C1'" ? A DC 15 ? 'WRONG HAND' . 3 3 "C1'" ? A DC 15 ? 'WRONG HAND' . 4 4 "C1'" ? A DC 15 ? 'WRONG HAND' . 5 5 "C1'" ? A DC 15 ? 'WRONG HAND' . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NGU 'double helix' 1NGU 'b-form double helix' 1NGU 'hairpin loop' 1NGU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 27 1_555 -0.550 0.096 0.501 12.541 -21.495 -5.424 1 A_DC1:DG27_A A 1 ? A 27 ? 19 1 1 A DT 2 1_555 A DA 26 1_555 0.622 -0.096 0.278 -0.119 -27.793 -5.188 2 A_DT2:DA26_A A 2 ? A 26 ? 20 1 1 A DC 3 1_555 A DG 25 1_555 1.072 -0.290 0.694 -18.112 -17.143 -4.732 3 A_DC3:DG25_A A 3 ? A 25 ? 19 1 1 A DT 4 1_555 A DA 24 1_555 0.801 -0.181 1.005 -14.629 -4.680 -3.196 4 A_DT4:DA24_A A 4 ? A 24 ? 20 1 1 A DC 5 1_555 A DA 23 1_555 0.848 0.124 0.392 -24.209 -43.353 -21.001 5 A_DC5:DA23_A A 5 ? A 23 ? ? ? 1 A DC 6 1_555 A DA 22 1_555 2.490 0.177 0.567 -37.023 -30.841 -24.135 6 A_DC6:DA22_A A 6 ? A 22 ? ? ? 1 A DT 8 1_555 A DA 20 1_555 -0.691 0.033 -0.396 -32.552 -0.788 8.263 7 A_DT8:DA20_A A 8 ? A 20 ? 20 1 1 A DG 9 1_555 A DC 19 1_555 -1.156 -0.275 0.205 -19.633 -22.793 -3.315 8 A_DG9:DC19_A A 9 ? A 19 ? 19 1 1 A DT 10 1_555 A DA 18 1_555 0.492 0.102 0.364 -19.592 -4.761 -3.434 9 A_DT10:DA18_A A 10 ? A 18 ? 20 1 1 A DA 11 1_555 A DT 17 1_555 0.856 0.028 -0.689 1.960 29.291 -23.405 10 A_DA11:DT17_A A 11 ? A 17 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 27 1_555 A DT 2 1_555 A DA 26 1_555 -0.098 -0.421 3.499 2.433 0.094 39.086 -0.640 0.458 3.486 0.141 -3.632 39.159 1 AA_DC1DT2:DA26DG27_AA A 1 ? A 27 ? A 2 ? A 26 ? 1 A DT 2 1_555 A DA 26 1_555 A DC 3 1_555 A DG 25 1_555 0.002 -0.416 3.529 -2.813 0.428 44.736 -0.587 -0.278 3.519 0.561 3.691 44.822 2 AA_DT2DC3:DG25DA26_AA A 2 ? A 26 ? A 3 ? A 25 ? 1 A DC 3 1_555 A DG 25 1_555 A DT 4 1_555 A DA 24 1_555 0.253 -0.696 3.145 -2.036 -4.189 32.333 -0.531 -0.793 3.186 -7.475 3.632 32.658 3 AA_DC3DT4:DA24DG25_AA A 3 ? A 25 ? A 4 ? A 24 ? 1 A DT 4 1_555 A DA 24 1_555 A DC 5 1_555 A DA 23 1_555 -2.288 0.415 3.445 -5.370 -25.741 45.037 2.340 2.230 3.050 -30.718 6.408 51.804 4 AA_DT4DC5:DA23DA24_AA A 4 ? A 24 ? A 5 ? A 23 ? 1 A DC 5 1_555 A DA 23 1_555 A DC 6 1_555 A DA 22 1_555 0.105 -0.620 3.391 2.073 0.165 41.685 -0.889 0.079 3.390 0.232 -2.911 41.735 5 AA_DC5DC6:DA22DA23_AA A 5 ? A 23 ? A 6 ? A 22 ? 1 A DC 6 1_555 A DA 22 1_555 A DT 8 1_555 A DA 20 1_555 1.231 3.124 6.113 -8.528 -23.389 76.339 3.535 -1.360 5.008 -18.466 6.733 79.704 6 AA_DC6DT8:DA20DA22_AA A 6 ? A 22 ? A 8 ? A 20 ? 1 A DT 8 1_555 A DA 20 1_555 A DG 9 1_555 A DC 19 1_555 -2.384 0.034 3.393 -2.566 -25.815 38.337 2.428 2.813 2.960 -34.878 3.467 46.015 7 AA_DT8DG9:DC19DA20_AA A 8 ? A 20 ? A 9 ? A 19 ? 1 A DG 9 1_555 A DC 19 1_555 A DT 10 1_555 A DA 18 1_555 0.278 -0.609 3.261 1.469 0.696 42.597 -0.908 -0.235 3.258 0.958 -2.021 42.626 8 AA_DG9DT10:DA18DC19_AA A 9 ? A 19 ? A 10 ? A 18 ? 1 A DT 10 1_555 A DA 18 1_555 A DA 11 1_555 A DT 17 1_555 -0.237 -0.522 3.071 5.971 -8.728 26.237 0.875 1.815 2.966 -18.309 -12.525 28.253 9 AA_DT10DA11:DT17DA18_AA A 10 ? A 18 ? A 11 ? A 17 ? #