data_1NLC # _entry.id 1NLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NLC pdb_00001nlc 10.2210/pdb1nlc/pdb NDB AR0044 ? ? RCSB RCSB017977 ? ? WWPDB D_1000017977 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-13 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 26 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NLC _pdbx_database_status.recvd_initial_deposition_date 2003-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 462D _pdbx_database_related.details 'HIV-1 DIS duplex(Mal) Mg-soaked' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Walter, P.' 2 'Dumas, P.' 3 # _citation.id primary _citation.title 'A crystallographic study of the binding of 13 metal ions to two related RNA duplexes.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 2671 _citation.page_last 2682 _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12736317 _citation.pdbx_database_id_DOI 10.1093/nar/gkg350 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Walter, P.' 2 ? primary 'Dumas, P.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 DIS(MAL) genomic RNA' 7402.472 2 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 6 ? ? ? ? 3 water nat water 18.015 283 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;HIV-1 5' untranslated region ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 54 54 ZN ZN A . D 2 ZN 1 50 50 ZN ZO3 A . E 2 ZN 1 53 53 ZN ZN B . F 2 ZN 1 55 55 ZN ZN B . G 2 ZN 1 51 51 ZN ZNO B . H 2 ZN 1 52 52 ZN ZO3 B . I 3 HOH 1 102 102 HOH HOH A . I 3 HOH 2 103 103 HOH HOH A . I 3 HOH 3 104 104 HOH HOH A . I 3 HOH 4 105 105 HOH HOH A . I 3 HOH 5 106 106 HOH HOH A . I 3 HOH 6 107 107 HOH HOH A . I 3 HOH 7 116 116 HOH HOH A . I 3 HOH 8 117 117 HOH HOH A . I 3 HOH 9 118 118 HOH HOH A . I 3 HOH 10 119 119 HOH HOH A . I 3 HOH 11 120 120 HOH HOH A . I 3 HOH 12 121 121 HOH HOH A . I 3 HOH 13 123 123 HOH HOH A . I 3 HOH 14 124 124 HOH HOH A . I 3 HOH 15 127 127 HOH HOH A . I 3 HOH 16 132 132 HOH HOH A . I 3 HOH 17 135 135 HOH HOH A . I 3 HOH 18 136 136 HOH HOH A . I 3 HOH 19 137 137 HOH HOH A . I 3 HOH 20 138 138 HOH HOH A . I 3 HOH 21 139 139 HOH HOH A . I 3 HOH 22 141 141 HOH HOH A . I 3 HOH 23 143 143 HOH HOH A . I 3 HOH 24 144 144 HOH HOH A . I 3 HOH 25 146 146 HOH HOH A . I 3 HOH 26 147 147 HOH HOH A . I 3 HOH 27 149 149 HOH HOH A . I 3 HOH 28 156 156 HOH HOH A . I 3 HOH 29 162 162 HOH HOH A . I 3 HOH 30 163 163 HOH HOH A . I 3 HOH 31 164 164 HOH HOH A . I 3 HOH 32 165 165 HOH HOH A . I 3 HOH 33 168 168 HOH HOH A . I 3 HOH 34 169 169 HOH HOH A . I 3 HOH 35 171 171 HOH HOH A . I 3 HOH 36 172 172 HOH HOH A . I 3 HOH 37 175 175 HOH HOH A . I 3 HOH 38 182 182 HOH HOH A . I 3 HOH 39 183 183 HOH HOH A . I 3 HOH 40 185 185 HOH HOH A . I 3 HOH 41 186 186 HOH HOH A . I 3 HOH 42 189 189 HOH HOH A . I 3 HOH 43 191 191 HOH HOH A . I 3 HOH 44 192 192 HOH HOH A . I 3 HOH 45 193 193 HOH HOH A . I 3 HOH 46 194 194 HOH HOH A . I 3 HOH 47 195 195 HOH HOH A . I 3 HOH 48 196 196 HOH HOH A . I 3 HOH 49 197 197 HOH HOH A . I 3 HOH 50 198 198 HOH HOH A . I 3 HOH 51 200 200 HOH HOH A . I 3 HOH 52 201 201 HOH HOH A . I 3 HOH 53 202 202 HOH HOH A . I 3 HOH 54 203 203 HOH HOH A . I 3 HOH 55 204 204 HOH HOH A . I 3 HOH 56 205 205 HOH HOH A . I 3 HOH 57 207 207 HOH HOH A . I 3 HOH 58 211 211 HOH HOH A . I 3 HOH 59 212 212 HOH HOH A . I 3 HOH 60 213 213 HOH HOH A . I 3 HOH 61 214 214 HOH HOH A . I 3 HOH 62 216 216 HOH HOH A . I 3 HOH 63 218 218 HOH HOH A . I 3 HOH 64 219 219 HOH HOH A . I 3 HOH 65 220 220 HOH HOH A . I 3 HOH 66 223 223 HOH HOH A . I 3 HOH 67 225 225 HOH HOH A . I 3 HOH 68 227 227 HOH HOH A . I 3 HOH 69 228 228 HOH HOH A . I 3 HOH 70 229 229 HOH HOH A . I 3 HOH 71 231 231 HOH HOH A . I 3 HOH 72 232 232 HOH HOH A . I 3 HOH 73 233 233 HOH HOH A . I 3 HOH 74 234 234 HOH HOH A . I 3 HOH 75 237 237 HOH HOH A . I 3 HOH 76 239 239 HOH HOH A . I 3 HOH 77 240 240 HOH HOH A . I 3 HOH 78 241 241 HOH HOH A . I 3 HOH 79 242 242 HOH HOH A . I 3 HOH 80 243 243 HOH HOH A . I 3 HOH 81 244 244 HOH HOH A . I 3 HOH 82 245 245 HOH HOH A . I 3 HOH 83 246 246 HOH HOH A . I 3 HOH 84 247 247 HOH HOH A . I 3 HOH 85 248 248 HOH HOH A . I 3 HOH 86 249 249 HOH HOH A . I 3 HOH 87 250 250 HOH HOH A . I 3 HOH 88 253 253 HOH HOH A . I 3 HOH 89 256 256 HOH HOH A . I 3 HOH 90 257 257 HOH HOH A . I 3 HOH 91 260 260 HOH HOH A . I 3 HOH 92 261 261 HOH HOH A . I 3 HOH 93 264 264 HOH HOH A . I 3 HOH 94 266 266 HOH HOH A . I 3 HOH 95 267 267 HOH HOH A . I 3 HOH 96 268 268 HOH HOH A . I 3 HOH 97 269 269 HOH HOH A . I 3 HOH 98 270 270 HOH HOH A . I 3 HOH 99 271 271 HOH HOH A . I 3 HOH 100 272 272 HOH HOH A . I 3 HOH 101 273 273 HOH HOH A . I 3 HOH 102 274 274 HOH HOH A . I 3 HOH 103 277 277 HOH HOH A . I 3 HOH 104 278 278 HOH HOH A . I 3 HOH 105 279 279 HOH HOH A . I 3 HOH 106 280 280 HOH HOH A . I 3 HOH 107 281 281 HOH HOH A . I 3 HOH 108 283 283 HOH HOH A . I 3 HOH 109 286 286 HOH HOH A . I 3 HOH 110 287 287 HOH HOH A . I 3 HOH 111 288 288 HOH HOH A . I 3 HOH 112 289 289 HOH HOH A . I 3 HOH 113 290 290 HOH HOH A . I 3 HOH 114 293 293 HOH HOH A . I 3 HOH 115 294 294 HOH HOH A . I 3 HOH 116 295 295 HOH HOH A . I 3 HOH 117 297 297 HOH HOH A . I 3 HOH 118 298 298 HOH HOH A . I 3 HOH 119 299 299 HOH HOH A . I 3 HOH 120 300 300 HOH HOH A . I 3 HOH 121 303 303 HOH HOH A . I 3 HOH 122 304 304 HOH HOH A . I 3 HOH 123 306 306 HOH HOH A . I 3 HOH 124 308 308 HOH HOH A . I 3 HOH 125 311 311 HOH HOH A . I 3 HOH 126 313 313 HOH HOH A . I 3 HOH 127 318 318 HOH HOH A . I 3 HOH 128 319 319 HOH HOH A . I 3 HOH 129 320 320 HOH HOH A . I 3 HOH 130 322 322 HOH HOH A . I 3 HOH 131 323 323 HOH HOH A . I 3 HOH 132 327 327 HOH HOH A . I 3 HOH 133 329 329 HOH HOH A . I 3 HOH 134 331 331 HOH HOH A . I 3 HOH 135 332 332 HOH HOH A . I 3 HOH 136 338 338 HOH HOH A . I 3 HOH 137 339 339 HOH HOH A . I 3 HOH 138 340 340 HOH HOH A . I 3 HOH 139 343 343 HOH HOH A . I 3 HOH 140 344 344 HOH HOH A . I 3 HOH 141 345 345 HOH HOH A . I 3 HOH 142 347 347 HOH HOH A . I 3 HOH 143 348 348 HOH HOH A . I 3 HOH 144 350 350 HOH HOH A . I 3 HOH 145 351 351 HOH HOH A . I 3 HOH 146 352 352 HOH HOH A . I 3 HOH 147 359 359 HOH HOH A . I 3 HOH 148 360 360 HOH HOH A . I 3 HOH 149 363 363 HOH HOH A . I 3 HOH 150 365 365 HOH HOH A . I 3 HOH 151 367 367 HOH HOH A . I 3 HOH 152 369 369 HOH HOH A . I 3 HOH 153 370 370 HOH HOH A . I 3 HOH 154 374 374 HOH HOH A . I 3 HOH 155 377 377 HOH HOH A . I 3 HOH 156 386 50 HOH ZO3 A . I 3 HOH 157 387 50 HOH ZO3 A . I 3 HOH 158 388 50 HOH ZO3 A . I 3 HOH 159 389 51 HOH ZNO A . J 3 HOH 1 100 100 HOH HOH B . J 3 HOH 2 101 101 HOH HOH B . J 3 HOH 3 108 108 HOH HOH B . J 3 HOH 4 109 109 HOH HOH B . J 3 HOH 5 110 110 HOH HOH B . J 3 HOH 6 111 111 HOH HOH B . J 3 HOH 7 112 112 HOH HOH B . J 3 HOH 8 113 113 HOH HOH B . J 3 HOH 9 114 114 HOH HOH B . J 3 HOH 10 115 115 HOH HOH B . J 3 HOH 11 122 122 HOH HOH B . J 3 HOH 12 125 125 HOH HOH B . J 3 HOH 13 126 126 HOH HOH B . J 3 HOH 14 128 128 HOH HOH B . J 3 HOH 15 129 129 HOH HOH B . J 3 HOH 16 130 130 HOH HOH B . J 3 HOH 17 131 131 HOH HOH B . J 3 HOH 18 133 133 HOH HOH B . J 3 HOH 19 134 134 HOH HOH B . J 3 HOH 20 140 140 HOH HOH B . J 3 HOH 21 142 142 HOH HOH B . J 3 HOH 22 145 145 HOH HOH B . J 3 HOH 23 148 148 HOH HOH B . J 3 HOH 24 150 150 HOH HOH B . J 3 HOH 25 151 151 HOH HOH B . J 3 HOH 26 152 152 HOH HOH B . J 3 HOH 27 153 153 HOH HOH B . J 3 HOH 28 155 155 HOH HOH B . J 3 HOH 29 157 157 HOH HOH B . J 3 HOH 30 158 158 HOH HOH B . J 3 HOH 31 159 159 HOH HOH B . J 3 HOH 32 160 160 HOH HOH B . J 3 HOH 33 167 167 HOH HOH B . J 3 HOH 34 170 170 HOH HOH B . J 3 HOH 35 173 173 HOH HOH B . J 3 HOH 36 174 174 HOH HOH B . J 3 HOH 37 176 176 HOH HOH B . J 3 HOH 38 177 177 HOH HOH B . J 3 HOH 39 178 178 HOH HOH B . J 3 HOH 40 179 179 HOH HOH B . J 3 HOH 41 180 180 HOH HOH B . J 3 HOH 42 181 181 HOH HOH B . J 3 HOH 43 184 184 HOH HOH B . J 3 HOH 44 187 187 HOH HOH B . J 3 HOH 45 188 188 HOH HOH B . J 3 HOH 46 190 190 HOH HOH B . J 3 HOH 47 199 199 HOH HOH B . J 3 HOH 48 206 206 HOH HOH B . J 3 HOH 49 208 208 HOH HOH B . J 3 HOH 50 209 209 HOH HOH B . J 3 HOH 51 210 210 HOH HOH B . J 3 HOH 52 215 215 HOH HOH B . J 3 HOH 53 217 217 HOH HOH B . J 3 HOH 54 221 221 HOH HOH B . J 3 HOH 55 222 222 HOH HOH B . J 3 HOH 56 224 224 HOH HOH B . J 3 HOH 57 226 226 HOH HOH B . J 3 HOH 58 230 230 HOH HOH B . J 3 HOH 59 235 235 HOH HOH B . J 3 HOH 60 236 236 HOH HOH B . J 3 HOH 61 238 238 HOH HOH B . J 3 HOH 62 251 251 HOH HOH B . J 3 HOH 63 252 252 HOH HOH B . J 3 HOH 64 254 254 HOH HOH B . J 3 HOH 65 255 255 HOH HOH B . J 3 HOH 66 258 258 HOH HOH B . J 3 HOH 67 259 259 HOH HOH B . J 3 HOH 68 262 262 HOH HOH B . J 3 HOH 69 263 263 HOH HOH B . J 3 HOH 70 265 265 HOH HOH B . J 3 HOH 71 275 275 HOH HOH B . J 3 HOH 72 276 276 HOH HOH B . J 3 HOH 73 282 282 HOH HOH B . J 3 HOH 74 284 284 HOH HOH B . J 3 HOH 75 292 292 HOH HOH B . J 3 HOH 76 296 296 HOH HOH B . J 3 HOH 77 301 301 HOH HOH B . J 3 HOH 78 302 302 HOH HOH B . J 3 HOH 79 305 305 HOH HOH B . J 3 HOH 80 307 307 HOH HOH B . J 3 HOH 81 309 309 HOH HOH B . J 3 HOH 82 310 310 HOH HOH B . J 3 HOH 83 312 312 HOH HOH B . J 3 HOH 84 314 314 HOH HOH B . J 3 HOH 85 315 315 HOH HOH B . J 3 HOH 86 316 316 HOH HOH B . J 3 HOH 87 317 317 HOH HOH B . J 3 HOH 88 321 321 HOH HOH B . J 3 HOH 89 324 324 HOH HOH B . J 3 HOH 90 325 325 HOH HOH B . J 3 HOH 91 326 326 HOH HOH B . J 3 HOH 92 328 328 HOH HOH B . J 3 HOH 93 330 330 HOH HOH B . J 3 HOH 94 333 333 HOH HOH B . J 3 HOH 95 334 334 HOH HOH B . J 3 HOH 96 335 335 HOH HOH B . J 3 HOH 97 336 336 HOH HOH B . J 3 HOH 98 337 337 HOH HOH B . J 3 HOH 99 341 341 HOH HOH B . J 3 HOH 100 342 342 HOH HOH B . J 3 HOH 101 349 349 HOH HOH B . J 3 HOH 102 353 353 HOH HOH B . J 3 HOH 103 354 354 HOH HOH B . J 3 HOH 104 355 355 HOH HOH B . J 3 HOH 105 357 357 HOH HOH B . J 3 HOH 106 361 361 HOH HOH B . J 3 HOH 107 362 362 HOH HOH B . J 3 HOH 108 364 364 HOH HOH B . J 3 HOH 109 366 366 HOH HOH B . J 3 HOH 110 368 368 HOH HOH B . J 3 HOH 111 371 371 HOH HOH B . J 3 HOH 112 372 372 HOH HOH B . J 3 HOH 113 373 373 HOH HOH B . J 3 HOH 114 375 375 HOH HOH B . J 3 HOH 115 376 376 HOH HOH B . J 3 HOH 116 378 378 HOH HOH B . J 3 HOH 117 380 380 HOH HOH B . J 3 HOH 118 381 381 HOH HOH B . J 3 HOH 119 384 384 HOH HOH B . J 3 HOH 120 385 385 HOH HOH B . J 3 HOH 121 390 51 HOH ZNO B . J 3 HOH 122 391 52 HOH ZO3 B . J 3 HOH 123 392 52 HOH ZO3 B . J 3 HOH 124 393 52 HOH ZO3 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 0.4 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # _cell.entry_id 1NLC _cell.length_a 59.333 _cell.length_b 59.333 _cell.length_c 63.683 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NLC _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 1NLC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.72 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MPD, Cacodylate, KCl, MgCl2, spermine, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator crystal _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.26 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.26 # _reflns.entry_id 1NLC _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 15 _reflns.d_resolution_high 1.85 _reflns.number_obs 21043 _reflns.number_all 21273 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 32.3 _reflns.B_iso_Wilson_estimate 22.7 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.188 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1NLC _refine.ls_number_reflns_obs 19553 _refine.ls_number_reflns_all 21156 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1639517.06 _refine.pdbx_data_cutoff_low_absF 0.0 _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 92.4 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.219 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.5 _refine.ls_number_reflns_R_free 1476 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.5 _refine.aniso_B[1][1] -3.12 _refine.aniso_B[2][2] -3.12 _refine.aniso_B[3][3] 6.23 _refine.aniso_B[1][2] 0.51 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.272173 _refine.solvent_model_param_bsol 56.6762 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1NLC _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.22 _refine_analyze.Luzzati_d_res_low_obs 10.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.23 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1048 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 277 _refine_hist.number_atoms_total 1340 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 9.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.76 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.85 _refine_ls_shell.d_res_low 1.96 _refine_ls_shell.number_reflns_R_work 2511 _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.percent_reflns_obs 77.3 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 7.1 _refine_ls_shell.number_reflns_R_free 193 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 LUC.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1NLC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NLC _struct.title 'HIV-1 DIS(Mal) duplex Zn-soaked' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NLC _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, Zinc' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1NLC _struct_ref.pdbx_db_accession 1NLC _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NLC A 1 ? 23 ? 1NLC 1 ? 23 ? 1 23 2 1 1NLC B 1 ? 23 ? 1NLC 1 ? 23 ? 1 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 8 OP2 ? ? ? 1_555 C ZN . ZN ? ? A A 8 A ZN 54 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc2 metalc ? ? A G 9 N7 ? ? ? 1_555 C ZN . ZN ? ? A G 9 A ZN 54 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 50 A HOH 168 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 50 A HOH 319 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 50 A HOH 386 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 50 A HOH 387 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc7 metalc ? ? D ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 50 A HOH 388 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 54 A HOH 137 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 54 A HOH 156 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc10 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 54 A HOH 241 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc11 metalc ? ? C ZN . ZN ? ? ? 1_555 I HOH . O ? ? A ZN 54 A HOH 256 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc12 metalc ? ? I HOH . O ? ? ? 1_555 G ZN . ZN ? ? A HOH 389 B ZN 51 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc13 metalc ? ? B A 8 OP2 A ? ? 1_555 E ZN . ZN ? ? B A 8 B ZN 53 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc14 metalc ? ? B A 8 OP2 B ? ? 1_555 E ZN . ZN ? ? B A 8 B ZN 53 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc15 metalc ? ? B G 9 N7 A ? ? 1_555 E ZN . ZN ? ? B G 9 B ZN 53 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc16 metalc ? ? B G 9 N7 B ? ? 1_555 E ZN . ZN ? ? B G 9 B ZN 53 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc17 metalc ? ? B A 22 N7 ? ? ? 1_555 F ZN . ZN ? ? B A 22 B ZN 55 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc18 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 51 B HOH 330 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc19 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 51 B HOH 376 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc20 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 51 B HOH 384 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc21 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 51 B HOH 385 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc22 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 51 B HOH 390 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc23 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 52 B HOH 380 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc24 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 52 B HOH 381 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc25 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O B ? B ZN 52 B HOH 391 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc26 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 52 B HOH 392 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc27 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 52 B HOH 393 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc28 metalc ? ? E ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 53 B HOH 353 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc29 metalc ? ? E ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 53 B HOH 354 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc30 metalc ? ? E ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 53 B HOH 355 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc31 metalc ? ? E ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 53 B HOH 378 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc32 metalc ? ? F ZN . ZN ? ? ? 1_555 J HOH . O ? ? B ZN 55 B HOH 174 1_555 ? ? ? ? ? ? ? 2.726 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N1 ? ? ? 1_555 B A 16 N1 ? ? A G 9 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 B A 16 N6 ? ? A G 9 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 9 B C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 16 N1 ? ? ? 1_555 B G 9 N1 A ? A A 16 B G 9 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A A 16 N6 ? ? ? 1_555 B G 9 O6 A ? A A 16 B G 9 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 7 N1 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 7 O6 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 7 N2 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 18 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 18 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 22 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 23 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 23 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 23 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 8 ? A A 8 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 N7 ? A G 9 ? A G 9 ? 1_555 85.8 ? 2 OP2 ? A A 8 ? A A 8 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 137 ? 1_555 89.3 ? 3 N7 ? A G 9 ? A G 9 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 137 ? 1_555 174.6 ? 4 OP2 ? A A 8 ? A A 8 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 156 ? 1_555 87.0 ? 5 N7 ? A G 9 ? A G 9 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 156 ? 1_555 88.8 ? 6 O ? I HOH . ? A HOH 137 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 156 ? 1_555 93.2 ? 7 OP2 ? A A 8 ? A A 8 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 91.3 ? 8 N7 ? A G 9 ? A G 9 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 83.9 ? 9 O ? I HOH . ? A HOH 137 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 93.9 ? 10 O ? I HOH . ? A HOH 156 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 172.6 ? 11 OP2 ? A A 8 ? A A 8 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 256 ? 1_555 165.4 ? 12 N7 ? A G 9 ? A G 9 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 256 ? 1_555 82.0 ? 13 O ? I HOH . ? A HOH 137 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 256 ? 1_555 103.1 ? 14 O ? I HOH . ? A HOH 156 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 256 ? 1_555 84.8 ? 15 O ? I HOH . ? A HOH 241 ? 1_555 ZN ? C ZN . ? A ZN 54 ? 1_555 O ? I HOH . ? A HOH 256 ? 1_555 95.3 ? 16 O ? I HOH . ? A HOH 168 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 319 ? 1_555 94.5 ? 17 O ? I HOH . ? A HOH 168 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 386 ? 1_555 170.1 ? 18 O ? I HOH . ? A HOH 319 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 386 ? 1_555 93.6 ? 19 O ? I HOH . ? A HOH 168 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 387 ? 1_555 86.3 ? 20 O ? I HOH . ? A HOH 319 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 387 ? 1_555 78.4 ? 21 O ? I HOH . ? A HOH 386 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 387 ? 1_555 100.8 ? 22 O ? I HOH . ? A HOH 168 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 388 ? 1_555 86.7 ? 23 O ? I HOH . ? A HOH 319 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 388 ? 1_555 172.9 ? 24 O ? I HOH . ? A HOH 386 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 388 ? 1_555 85.9 ? 25 O ? I HOH . ? A HOH 387 ? 1_555 ZN ? D ZN . ? A ZN 50 ? 1_555 O ? I HOH . ? A HOH 388 ? 1_555 94.7 ? 26 O ? I HOH . ? A HOH 389 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 330 ? 1_555 95.8 ? 27 O ? I HOH . ? A HOH 389 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 376 ? 1_555 167.6 ? 28 O ? J HOH . ? B HOH 330 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 376 ? 1_555 83.3 ? 29 O ? I HOH . ? A HOH 389 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 384 ? 1_555 92.7 ? 30 O ? J HOH . ? B HOH 330 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 384 ? 1_555 100.5 ? 31 O ? J HOH . ? B HOH 376 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 384 ? 1_555 75.4 ? 32 O ? I HOH . ? A HOH 389 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 385 ? 1_555 105.0 ? 33 O ? J HOH . ? B HOH 330 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 385 ? 1_555 76.9 ? 34 O ? J HOH . ? B HOH 376 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 385 ? 1_555 86.9 ? 35 O ? J HOH . ? B HOH 384 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 385 ? 1_555 162.3 ? 36 O ? I HOH . ? A HOH 389 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 390 ? 1_555 86.5 ? 37 O ? J HOH . ? B HOH 330 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 390 ? 1_555 174.7 ? 38 O ? J HOH . ? B HOH 376 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 390 ? 1_555 95.4 ? 39 O ? J HOH . ? B HOH 384 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 390 ? 1_555 84.1 ? 40 O ? J HOH . ? B HOH 385 ? 1_555 ZN ? G ZN . ? B ZN 51 ? 1_555 O ? J HOH . ? B HOH 390 ? 1_555 97.9 ? 41 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 OP2 B B A 8 ? B A 8 ? 1_555 16.8 ? 42 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 N7 A B G 9 ? B G 9 ? 1_555 91.1 ? 43 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 N7 A B G 9 ? B G 9 ? 1_555 101.0 ? 44 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 N7 B B G 9 ? B G 9 ? 1_555 74.0 ? 45 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 N7 B B G 9 ? B G 9 ? 1_555 87.2 ? 46 N7 A B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 N7 B B G 9 ? B G 9 ? 1_555 21.7 ? 47 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 353 ? 1_555 102.3 ? 48 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 353 ? 1_555 90.9 ? 49 N7 A B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 353 ? 1_555 165.7 ? 50 N7 B B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 353 ? 1_555 171.1 ? 51 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 354 ? 1_555 176.7 ? 52 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 354 ? 1_555 166.5 ? 53 N7 A B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 354 ? 1_555 86.9 ? 54 N7 B B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 354 ? 1_555 103.4 ? 55 O ? J HOH . ? B HOH 353 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 354 ? 1_555 79.9 ? 56 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 91.7 ? 57 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 103.5 ? 58 N7 A B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 98.0 ? 59 N7 B B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 85.2 ? 60 O ? J HOH . ? B HOH 353 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 86.8 ? 61 O ? J HOH . ? B HOH 354 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 355 ? 1_555 85.9 ? 62 OP2 A B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 99.3 ? 63 OP2 B B A 8 ? B A 8 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 86.3 ? 64 N7 A B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 86.6 ? 65 N7 B B G 9 ? B G 9 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 102.3 ? 66 O ? J HOH . ? B HOH 353 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 86.3 ? 67 O ? J HOH . ? B HOH 354 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 83.3 ? 68 O ? J HOH . ? B HOH 355 ? 1_555 ZN ? E ZN . ? B ZN 53 ? 1_555 O ? J HOH . ? B HOH 378 ? 1_555 168.0 ? 69 N7 ? B A 22 ? B A 22 ? 1_555 ZN ? F ZN . ? B ZN 55 ? 1_555 O ? J HOH . ? B HOH 174 ? 1_555 142.8 ? 70 O ? J HOH . ? B HOH 380 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 381 ? 1_555 86.3 ? 71 O ? J HOH . ? B HOH 380 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O B J HOH . ? B HOH 391 ? 1_555 87.6 ? 72 O ? J HOH . ? B HOH 381 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O B J HOH . ? B HOH 391 ? 1_555 90.5 ? 73 O ? J HOH . ? B HOH 380 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 392 ? 1_555 115.2 ? 74 O ? J HOH . ? B HOH 381 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 392 ? 1_555 98.5 ? 75 O B J HOH . ? B HOH 391 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 392 ? 1_555 155.9 ? 76 O ? J HOH . ? B HOH 380 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 393 ? 1_555 92.4 ? 77 O ? J HOH . ? B HOH 381 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 393 ? 1_555 172.0 ? 78 O B J HOH . ? B HOH 391 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 393 ? 1_555 97.3 ? 79 O ? J HOH . ? B HOH 392 ? 1_555 ZN ? H ZN . ? B ZN 52 ? 1_555 O ? J HOH . ? B HOH 393 ? 1_555 74.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ZN 53 ? 6 'BINDING SITE FOR RESIDUE ZN B 53' AC2 Software A ZN 54 ? 6 'BINDING SITE FOR RESIDUE ZN A 54' AC3 Software B ZN 55 ? 2 'BINDING SITE FOR RESIDUE ZN B 55' AC4 Software A ZN 50 ? 5 'BINDING SITE FOR RESIDUE ZN A 50' AC5 Software B ZN 51 ? 6 'BINDING SITE FOR RESIDUE ZN B 51' AC6 Software B ZN 52 ? 5 'BINDING SITE FOR RESIDUE ZN B 52' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A B 8 ? A B 8 . ? 1_555 ? 2 AC1 6 G B 9 ? G B 9 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH B 353 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH B 354 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH B 355 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH B 378 . ? 1_555 ? 7 AC2 6 A A 8 ? A A 8 . ? 1_555 ? 8 AC2 6 G A 9 ? G A 9 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH A 137 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH A 156 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH A 241 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH A 256 . ? 1_555 ? 13 AC3 2 A B 22 ? A B 22 . ? 1_555 ? 14 AC3 2 HOH J . ? HOH B 174 . ? 1_555 ? 15 AC4 5 HOH I . ? HOH A 168 . ? 1_555 ? 16 AC4 5 HOH I . ? HOH A 319 . ? 1_555 ? 17 AC4 5 HOH I . ? HOH A 386 . ? 1_555 ? 18 AC4 5 HOH I . ? HOH A 387 . ? 1_555 ? 19 AC4 5 HOH I . ? HOH A 388 . ? 1_555 ? 20 AC5 6 HOH I . ? HOH A 389 . ? 1_555 ? 21 AC5 6 HOH J . ? HOH B 330 . ? 1_555 ? 22 AC5 6 HOH J . ? HOH B 376 . ? 1_555 ? 23 AC5 6 HOH J . ? HOH B 384 . ? 1_555 ? 24 AC5 6 HOH J . ? HOH B 385 . ? 1_555 ? 25 AC5 6 HOH J . ? HOH B 390 . ? 1_555 ? 26 AC6 5 HOH J . ? HOH B 380 . ? 1_555 ? 27 AC6 5 HOH J . ? HOH B 381 . ? 1_555 ? 28 AC6 5 HOH J . ? HOH B 391 . ? 1_555 ? 29 AC6 5 HOH J . ? HOH B 392 . ? 1_555 ? 30 AC6 5 HOH J . ? HOH B 393 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B G 4 ? ? P B G 4 ? ? OP2 B G 4 ? ? 98.27 105.70 -7.43 0.90 N 2 1 "C3'" B U 6 ? ? "O3'" B U 6 ? ? P B G 7 ? B 109.96 119.70 -9.74 1.20 Y 3 1 OP1 B G 9 ? A P B G 9 ? A OP2 B G 9 ? A 104.56 119.60 -15.04 1.50 N 4 1 "O5'" B G 9 ? A P B G 9 ? A OP2 B G 9 ? A 118.59 110.70 7.89 1.20 N 5 1 "C2'" B G 9 ? A "C3'" B G 9 ? A "O3'" B G 9 ? A 123.85 113.70 10.15 1.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 1 ? ? 0.081 'SIDE CHAIN' 2 1 G B 7 ? A 0.057 'SIDE CHAIN' 3 1 G B 10 ? ? 0.058 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 136 ? I HOH . 2 1 A HOH 203 ? I HOH . 3 1 A HOH 257 ? I HOH . 4 1 A HOH 264 ? I HOH . 5 1 B HOH 148 ? J HOH . 6 1 B HOH 333 ? J HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 ZN ZN ZN N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NLC 'double helix' 1NLC 'a-form double helix' 1NLC 'bulge loop' 1NLC 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 23 1_555 0.132 -0.087 -0.281 20.635 -26.168 -0.986 1 A_C1:G23_B A 1 ? B 23 ? 19 1 1 A U 2 1_555 B A 22 1_555 0.082 -0.246 -0.031 2.311 -21.085 5.107 2 A_U2:A22_B A 2 ? B 22 ? 20 1 1 A U 3 1_555 B A 21 1_555 -0.091 -0.215 -0.099 4.777 -17.915 4.025 3 A_U3:A21_B A 3 ? B 21 ? 20 1 1 A G 4 1_555 B C 20 1_555 0.044 -0.131 0.130 -5.069 -15.017 1.314 4 A_G4:C20_B A 4 ? B 20 ? 19 1 1 A C 5 1_555 B G 19 1_555 0.262 -0.188 0.042 -5.373 -15.986 -1.592 5 A_C5:G19_B A 5 ? B 19 ? 19 1 1 A U 6 1_555 B A 18 1_555 0.060 -0.141 0.361 -7.417 -9.321 2.208 6 A_U6:A18_B A 6 ? B 18 ? 20 1 1 A G 7 1_555 B C 17 1_555 -0.267 -0.185 -0.208 -5.167 -18.322 1.667 7 A_G7:C17_B A 7 ? B 17 ? 19 1 1 A G 9 1_555 B A 16 1_555 -0.200 1.493 -0.388 23.596 -24.708 -10.386 8 A_G9:A16_B A 9 ? B 16 ? 8 ? 1 A G 10 1_555 B C 15 1_555 -0.284 -0.083 -0.040 -8.056 -10.709 3.032 9 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.423 0.074 0.038 -1.339 -15.404 1.835 10 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.306 -0.130 0.330 -5.081 -12.620 -1.723 11 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 -0.194 -0.184 0.322 -1.830 -9.836 -1.940 12 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.240 -0.061 0.362 6.686 -10.562 2.087 13 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.214 -0.066 0.314 3.532 -13.428 1.156 14 A_C15:G10_B A 15 ? B 10 ? 19 1 1 A A 16 1_555 B G 9 1_555 -0.075 1.385 -0.358 -21.322 -25.391 -13.347 15 A_A16:G9_B A 16 ? B 9 ? 8 ? 1 A C 17 1_555 B G 7 1_555 0.260 -0.033 -0.220 4.350 -10.039 -1.862 16 A_C17:G7_B A 17 ? B 7 ? 19 1 1 A A 18 1_555 B U 6 1_555 0.112 -0.170 0.314 10.104 -9.374 2.190 17 A_A18:U6_B A 18 ? B 6 ? 20 1 1 A G 19 1_555 B C 5 1_555 -0.094 -0.231 0.183 4.628 -21.334 -0.160 18 A_G19:C5_B A 19 ? B 5 ? 19 1 1 A C 20 1_555 B G 4 1_555 0.483 -0.116 0.016 0.744 -18.374 4.497 19 A_C20:G4_B A 20 ? B 4 ? 19 1 1 A A 21 1_555 B U 3 1_555 -0.099 -0.121 -0.080 -2.535 -11.874 7.056 20 A_A21:U3_B A 21 ? B 3 ? 20 1 1 A A 22 1_555 B U 2 1_555 -0.006 -0.136 0.288 4.994 -10.834 5.995 21 A_A22:U2_B A 22 ? B 2 ? 20 1 1 A G 23 1_555 B C 1 1_555 -0.229 -0.297 -0.004 1.482 -21.738 -0.309 22 A_G23:C1_B A 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 23 1_555 A U 2 1_555 B A 22 1_555 -0.407 -1.468 3.685 -6.203 16.319 35.821 -4.155 -0.160 2.814 24.801 9.427 39.723 1 AA_C1U2:A22G23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A U 2 1_555 B A 22 1_555 A U 3 1_555 B A 21 1_555 -0.129 -0.970 3.105 -2.054 6.920 31.219 -2.906 -0.108 2.832 12.648 3.753 32.022 2 AA_U2U3:A21A22_BB A 2 ? B 22 ? A 3 ? B 21 ? 1 A U 3 1_555 B A 21 1_555 A G 4 1_555 B C 20 1_555 0.324 -1.810 3.409 -1.814 13.193 34.063 -4.611 -0.754 2.538 21.528 2.960 36.502 3 AA_U3G4:C20A21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A G 4 1_555 B C 20 1_555 A C 5 1_555 B G 19 1_555 -0.685 -1.436 3.118 0.351 9.622 32.686 -3.821 1.221 2.596 16.652 -0.608 34.038 4 AA_G4C5:G19C20_BB A 4 ? B 20 ? A 5 ? B 19 ? 1 A C 5 1_555 B G 19 1_555 A U 6 1_555 B A 18 1_555 0.523 -1.180 3.323 -0.834 7.226 30.502 -3.510 -1.121 2.957 13.495 1.557 31.338 5 AA_C5U6:A18G19_BB A 5 ? B 19 ? A 6 ? B 18 ? 1 A U 6 1_555 B A 18 1_555 A G 7 1_555 B C 17 1_555 0.780 -1.314 3.078 7.191 15.304 29.807 -4.364 -0.328 2.279 27.176 -12.768 34.175 6 AA_U6G7:C17A18_BB A 6 ? B 18 ? A 7 ? B 17 ? 1 A G 7 1_555 B C 17 1_555 A G 9 1_555 B A 16 1_555 -1.803 0.111 2.688 3.932 3.667 40.389 -0.164 2.937 2.509 5.282 -5.664 40.731 7 AA_G7G9:A16C17_BB A 7 ? B 17 ? A 9 ? B 16 ? 1 A G 9 1_555 B A 16 1_555 A G 10 1_555 B C 15 1_555 0.076 -2.246 3.720 -7.380 17.832 35.255 -5.294 -0.944 2.309 27.084 11.209 40.044 8 AA_G9G10:C15A16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.522 -1.397 3.010 -0.038 2.379 32.497 -2.865 0.925 2.904 4.244 0.067 32.582 9 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 0.611 -1.768 3.274 -0.881 9.343 31.397 -4.625 -1.225 2.636 16.800 1.584 32.736 10 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.292 -1.748 3.195 -0.769 3.057 29.416 -4.039 0.417 3.009 5.998 1.508 29.580 11 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.038 -1.513 2.780 -2.144 6.752 32.310 -3.577 -0.358 2.416 11.955 3.796 33.058 12 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.368 -1.701 3.361 2.247 1.005 32.591 -3.201 -0.256 3.325 1.788 -3.997 32.681 13 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 15 1_555 B G 10 1_555 A A 16 1_555 B G 9 1_555 -0.514 -2.076 3.407 7.777 14.788 35.013 -4.784 1.644 2.226 23.030 -12.111 38.683 14 AA_C15A16:G9G10_BB A 15 ? B 10 ? A 16 ? B 9 ? 1 A A 16 1_555 B G 9 1_555 A C 17 1_555 B G 7 1_555 1.282 -0.086 3.135 -9.711 -4.222 38.567 0.318 -2.900 2.740 -6.250 14.375 39.941 15 AA_A16C17:G7G9_BB A 16 ? B 9 ? A 17 ? B 7 ? 1 A C 17 1_555 B G 7 1_555 A A 18 1_555 B U 6 1_555 -0.122 -1.199 2.883 -2.684 14.911 30.959 -3.905 -0.132 2.105 26.068 4.692 34.386 16 AA_C17A18:U6G7_BB A 17 ? B 7 ? A 18 ? B 6 ? 1 A A 18 1_555 B U 6 1_555 A G 19 1_555 B C 5 1_555 0.257 -1.213 3.417 1.546 10.338 31.119 -3.910 -0.191 2.886 18.623 -2.785 32.787 17 AA_A18G19:C5U6_BB A 18 ? B 6 ? A 19 ? B 5 ? 1 A G 19 1_555 B C 5 1_555 A C 20 1_555 B G 4 1_555 0.802 -1.585 3.318 2.628 4.359 37.370 -3.015 -0.902 3.167 6.764 -4.078 37.703 18 AA_G19C20:G4C5_BB A 19 ? B 5 ? A 20 ? B 4 ? 1 A C 20 1_555 B G 4 1_555 A A 21 1_555 B U 3 1_555 -0.763 -1.543 3.240 0.461 12.738 27.815 -5.183 1.530 2.315 24.909 -0.902 30.544 19 AA_C20A21:U3G4_BB A 20 ? B 4 ? A 21 ? B 3 ? 1 A A 21 1_555 B U 3 1_555 A A 22 1_555 B U 2 1_555 -0.246 -0.767 3.032 -1.502 9.560 31.023 -2.875 0.204 2.692 17.351 2.727 32.462 20 AA_A21A22:U2U3_BB A 21 ? B 3 ? A 22 ? B 2 ? 1 A A 22 1_555 B U 2 1_555 A G 23 1_555 B C 1 1_555 0.364 -1.227 3.336 4.216 12.121 32.216 -3.862 0.015 2.736 20.840 -7.249 34.615 21 AA_A22G23:C1U2_BB A 22 ? B 2 ? A 23 ? B 1 ? # _atom_sites.entry_id 1NLC _atom_sites.fract_transf_matrix[1][1] 0.016854 _atom_sites.fract_transf_matrix[1][2] 0.009731 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019461 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P ZN # loop_