HEADER TRANSFERASE 12-JAN-03 1NN0 TITLE CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMP AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DTYMK OR TYMK OR TMPK OR CDC8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THYMIDYLATE KINASE, P-LOOP, DIDEOXYTHYMIDINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.OSTERMANN,D.SEGURA-PENA,C.MEIER,T.VEIT,M.MONNERJAHN,M.KONRAD, AUTHOR 2 A.LAVIE REVDAT 6 14-FEB-24 1NN0 1 REMARK REVDAT 5 27-OCT-21 1NN0 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1NN0 1 REMARK REVDAT 3 13-JUL-11 1NN0 1 VERSN REVDAT 2 24-FEB-09 1NN0 1 VERSN REVDAT 1 18-MAR-03 1NN0 0 JRNL AUTH N.OSTERMANN,D.SEGURA-PENA,C.MEIER,T.VEIT,M.MONNERJAHN, JRNL AUTH 2 M.KONRAD,A.LAVIE JRNL TITL STRUCTURES OF HUMAN THYMIDYLATE KINASE IN COMPLEX WITH JRNL TITL 2 PRODRUGS: IMPLICATIONS FOR THE STRUCTURE-BASED DESIGN OF JRNL TITL 3 NOVEL COMPOUNDS JRNL REF BIOCHEMISTRY V. 42 2568 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12614151 JRNL DOI 10.1021/BI027302T REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3235 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9887 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 70.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36400 REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER METHODS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG 3350, 100 MM TRIS/HCL, PH REMARK 280 8.0, 5% FILTERED DEAD SEA WATER, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.98150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.26750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.26750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.47225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.26750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.26750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.49075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.26750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.26750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.47225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.26750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.26750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 12.49075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.98150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 100.53500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 100.53500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.98150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 HIS A 148 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 41 O HOH A 778 1.94 REMARK 500 O HOH A 746 O HOH A 838 2.02 REMARK 500 O HOH A 510 O HOH A 803 2.05 REMARK 500 NH2 ARG A 4 O HOH A 855 2.06 REMARK 500 O HOH A 775 O HOH A 808 2.07 REMARK 500 O HOH A 651 O HOH A 807 2.09 REMARK 500 O HOH A 692 O HOH A 837 2.10 REMARK 500 NE2 GLN A 166 O HOH A 597 2.13 REMARK 500 OE1 GLN A 166 NZ LYS A 169 2.14 REMARK 500 OE2 GLU A 85 O HOH A 822 2.14 REMARK 500 O HOH A 524 O HOH A 778 2.17 REMARK 500 OD2 ASP A 197 O HOH A 519 2.18 REMARK 500 O HOH A 581 O HOH A 659 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 610 O HOH A 675 8666 1.77 REMARK 500 O HOH A 609 O HOH A 651 4455 2.04 REMARK 500 O HOH A 627 O HOH A 818 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 97 148.17 71.49 REMARK 500 TYR A 98 -147.76 -150.14 REMARK 500 ARG A 143 43.83 -97.49 REMARK 500 TYR A 151 -3.75 75.73 REMARK 500 THR A 201 -71.11 -74.41 REMARK 500 ALA A 202 -36.66 -30.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 19 11.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 OG REMARK 620 2 ADP A 302 O2B 95.9 REMARK 620 3 HOH A 505 O 85.3 174.7 REMARK 620 4 HOH A 506 O 91.9 91.9 82.8 REMARK 620 5 HOH A 507 O 170.4 91.4 88.1 94.1 REMARK 620 6 HOH A 753 O 86.9 97.5 87.8 170.6 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 756 O REMARK 620 2 HOH A 756 O 87.7 REMARK 620 3 HOH A 761 O 103.0 94.5 REMARK 620 4 HOH A 761 O 75.0 88.0 176.7 REMARK 620 5 HOH A 771 O 157.4 89.9 99.7 82.4 REMARK 620 6 HOH A 771 O 83.5 167.4 96.2 81.0 94.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2DT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 302 DBREF 1NN0 A 1 212 UNP P23919 DTYMK_HUMAN 1 212 SEQADV 1NN0 GLY A -2 UNP P23919 CLONING ARTIFACT SEQADV 1NN0 SER A -1 UNP P23919 CLONING ARTIFACT SEQADV 1NN0 HIS A 0 UNP P23919 CLONING ARTIFACT SEQADV 1NN0 ALA A 200 UNP P23919 ARG 200 ENGINEERED MUTATION SEQRES 1 A 215 GLY SER HIS MET ALA ALA ARG ARG GLY ALA LEU ILE VAL SEQRES 2 A 215 LEU GLU GLY VAL ASP ARG ALA GLY LYS SER THR GLN SER SEQRES 3 A 215 ARG LYS LEU VAL GLU ALA LEU CYS ALA ALA GLY HIS ARG SEQRES 4 A 215 ALA GLU LEU LEU ARG PHE PRO GLU ARG SER THR GLU ILE SEQRES 5 A 215 GLY LYS LEU LEU SER SER TYR LEU GLN LYS LYS SER ASP SEQRES 6 A 215 VAL GLU ASP HIS SER VAL HIS LEU LEU PHE SER ALA ASN SEQRES 7 A 215 ARG TRP GLU GLN VAL PRO LEU ILE LYS GLU LYS LEU SER SEQRES 8 A 215 GLN GLY VAL THR LEU VAL VAL ASP ARG TYR ALA PHE SER SEQRES 9 A 215 GLY VAL ALA PHE THR GLY ALA LYS GLU ASN PHE SER LEU SEQRES 10 A 215 ASP TRP CYS LYS GLN PRO ASP VAL GLY LEU PRO LYS PRO SEQRES 11 A 215 ASP LEU VAL LEU PHE LEU GLN LEU GLN LEU ALA ASP ALA SEQRES 12 A 215 ALA LYS ARG GLY ALA PHE GLY HIS GLU ARG TYR GLU ASN SEQRES 13 A 215 GLY ALA PHE GLN GLU ARG ALA LEU ARG CYS PHE HIS GLN SEQRES 14 A 215 LEU MET LYS ASP THR THR LEU ASN TRP LYS MET VAL ASP SEQRES 15 A 215 ALA SER LYS SER ILE GLU ALA VAL HIS GLU ASP ILE ARG SEQRES 16 A 215 VAL LEU SER GLU ASP ALA ILE ALA THR ALA THR GLU LYS SEQRES 17 A 215 PRO LEU GLY GLU LEU TRP LYS HET MG A 401 1 HET MG A 402 1 HET 2DT A 301 20 HET ADP A 302 27 HETNAM MG MAGNESIUM ION HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 2DT C10 H15 N2 O7 P FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *305(H2 O) HELIX 1 1 GLY A 18 ALA A 33 1 16 HELIX 2 2 THR A 47 GLN A 58 1 12 HELIX 3 3 GLU A 64 GLU A 78 1 15 HELIX 4 4 GLN A 79 GLN A 89 1 11 HELIX 5 5 TYR A 98 ALA A 108 1 11 HELIX 6 6 SER A 113 GLN A 119 1 7 HELIX 7 7 PRO A 120 VAL A 122 5 3 HELIX 8 9 ASN A 153 LYS A 169 1 17 HELIX 9 10 SER A 183 THR A 201 1 19 SHEET 1 A 5 ALA A 37 ARG A 41 0 SHEET 2 A 5 THR A 92 ASP A 96 1 O VAL A 94 N LEU A 40 SHEET 3 A 5 LEU A 8 GLY A 13 1 N ILE A 9 O LEU A 93 SHEET 4 A 5 LEU A 129 GLN A 134 1 O LEU A 131 N GLU A 12 SHEET 5 A 5 TRP A 175 ASP A 179 1 O VAL A 178 N PHE A 132 SHEET 1 B 2 PRO A 125 LYS A 126 0 SHEET 2 B 2 GLY A 208 GLU A 209 -1 O GLY A 208 N LYS A 126 LINK OG SER A 20 MG MG A 401 1555 1555 2.16 LINK O2B ADP A 302 MG MG A 401 1555 1555 1.98 LINK MG MG A 401 O HOH A 505 1555 1555 2.14 LINK MG MG A 401 O HOH A 506 1555 1555 2.12 LINK MG MG A 401 O HOH A 507 1555 1555 2.22 LINK MG MG A 401 O HOH A 753 1555 1555 2.19 LINK MG MG A 402 O HOH A 756 1555 1555 2.07 LINK MG MG A 402 O HOH A 756 1555 8665 1.92 LINK MG MG A 402 O HOH A 761 1555 1555 2.09 LINK MG MG A 402 O HOH A 761 1555 8665 2.69 LINK MG MG A 402 O HOH A 771 1555 1555 2.10 LINK MG MG A 402 O HOH A 771 1555 8665 2.20 CISPEP 1 PHE A 42 PRO A 43 0 1.11 SITE 1 AC1 6 SER A 20 ADP A 302 HOH A 505 HOH A 506 SITE 2 AC1 6 HOH A 507 HOH A 753 SITE 1 AC2 3 HOH A 756 HOH A 761 HOH A 771 SITE 1 AC3 17 PHE A 42 LEU A 57 PHE A 72 ARG A 76 SITE 2 AC3 17 ARG A 97 GLY A 102 PHE A 105 TYR A 151 SITE 3 AC3 17 HOH A 505 HOH A 507 HOH A 513 HOH A 537 SITE 4 AC3 17 HOH A 607 HOH A 753 HOH A 757 HOH A 781 SITE 5 AC3 17 HOH A 797 SITE 1 AC4 23 ARG A 16 ALA A 17 GLY A 18 LYS A 19 SITE 2 AC4 23 SER A 20 THR A 21 ARG A 143 LYS A 182 SITE 3 AC4 23 SER A 183 ILE A 184 ARG A 192 MG A 401 SITE 4 AC4 23 HOH A 506 HOH A 507 HOH A 508 HOH A 522 SITE 5 AC4 23 HOH A 549 HOH A 556 HOH A 564 HOH A 645 SITE 6 AC4 23 HOH A 686 HOH A 754 HOH A 765 CRYST1 100.535 100.535 49.963 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020015 0.00000