HEADER HYDROLASE 14-JAN-03 1NNL TITLE CRYSTAL STRUCTURE OF HUMAN PHOSPHOSERINE PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-3-PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOSERINE PHOSPHATASE; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET7A KEYWDS PHOSPHOSERINE PHOSPHATASE, PSP, HPSP, PHOSPHO-ASPARTYL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PEERAER,A.RABIJNS,C.VERBOVEN,J.F.COLLET,E.VAN SCHAFTINGEN,C.DE AUTHOR 2 RANTER REVDAT 3 13-MAR-24 1NNL 1 REMARK LINK REVDAT 2 24-FEB-09 1NNL 1 VERSN REVDAT 1 03-JUN-03 1NNL 0 JRNL AUTH Y.PEERAER,A.RABIJNS,C.VERBOVEN,J.F.COLLET,E.VAN SCHAFTINGEN, JRNL AUTH 2 C.DE RANTER JRNL TITL HIGH-RESOLUTION STRUCTURE OF HUMAN PHOSPHOSERINE PHOSPHATASE JRNL TITL 2 IN OPEN CONFORMATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 971 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777757 JRNL DOI 10.1107/S0907444903005407 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1471083.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 75202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3822 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11417 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 599 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88000 REMARK 3 B22 (A**2) : 5.03000 REMARK 3 B33 (A**2) : -3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.280 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.970 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 43.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8423 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, CALCIUM CHLORIDE, REMARK 280 CACODYLATE, PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.64650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.64650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.51650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.12450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.51650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.12450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.64650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.51650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.12450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.64650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.51650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.12450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1294 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 SER A 45 REMARK 465 GLU A 46 REMARK 465 MET A 47 REMARK 465 THR A 48 REMARK 465 ARG A 49 REMARK 465 ARG A 50 REMARK 465 ALA A 51 REMARK 465 MET A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 ALA A 55 REMARK 465 VAL A 56 REMARK 465 GLU A 222 REMARK 465 LEU A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 MET B 47 REMARK 465 THR B 48 REMARK 465 ARG B 49 REMARK 465 ARG B 50 REMARK 465 ALA B 51 REMARK 465 MET B 52 REMARK 465 GLY B 53 REMARK 465 GLY B 54 REMARK 465 ALA B 55 REMARK 465 VAL B 56 REMARK 465 GLU B 222 REMARK 465 LEU B 223 REMARK 465 GLU B 224 REMARK 465 GLU B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 VAL A 44 CB CG1 CG2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -65.28 -94.64 REMARK 500 SER A 23 -0.04 76.01 REMARK 500 THR A 24 -74.26 -116.14 REMARK 500 VAL B 21 -63.38 -94.65 REMARK 500 THR B 24 -74.26 -117.57 REMARK 500 SER B 45 -40.73 -153.92 REMARK 500 ASP B 147 98.90 -69.57 REMARK 500 ALA B 186 10.44 -66.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 20 OD2 49.9 REMARK 620 3 ASP A 22 O 78.2 99.9 REMARK 620 4 ASP A 179 OD2 73.8 117.7 91.3 REMARK 620 5 HOH A1026 O 98.4 78.0 176.6 87.4 REMARK 620 6 HOH A1028 O 127.8 80.2 99.7 157.2 82.7 REMARK 620 7 HOH A1069 O 150.4 159.5 87.1 81.0 95.8 79.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 20 OD1 REMARK 620 2 ASP B 20 OD2 47.9 REMARK 620 3 ASP B 22 O 82.6 95.7 REMARK 620 4 ASP B 179 OD1 72.8 119.1 88.3 REMARK 620 5 HOH B1021 O 90.2 76.7 171.9 92.9 REMARK 620 6 HOH B1068 O 125.7 77.9 102.1 159.4 79.3 REMARK 620 7 HOH B1117 O 152.7 159.1 88.0 81.4 100.1 81.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 185 O REMARK 620 2 PRO B 188 O 67.8 REMARK 620 3 HOH B1137 O 155.4 92.3 REMARK 620 4 HOH B1222 O 110.9 99.0 85.7 REMARK 620 5 HOH B1223 O 109.8 177.4 89.7 82.8 REMARK 620 6 HOH B1246 O 67.0 120.1 137.6 64.3 58.9 REMARK 620 7 HOH B1401 O 98.2 83.7 64.0 149.6 95.7 139.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS REMARK 900 JANNASCHII REMARK 900 RELATED ID: 1J97 RELATED DB: PDB REMARK 900 PHOSPHO-ASPARTYL INTERMEDIATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE REMARK 900 RELATED ID: 1L7M RELATED DB: PDB REMARK 900 HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1L7N RELATED DB: PDB REMARK 900 TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM REMARK 900 FLUORIDE COMPLEX) REMARK 900 RELATED ID: 1L7O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM REMARK 900 RELATED ID: 1L7P RELATED DB: PDB REMARK 900 SUBSTRATE BOUND PHOSPHOSERINE PHOSPHATASE COMPLEX STRUCTURE DBREF 1NNL A 1 225 UNP P78330 SERB_HUMAN 1 225 DBREF 1NNL B 1 225 UNP P78330 SERB_HUMAN 1 225 SEQRES 1 A 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 A 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 A 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 A 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 A 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 A 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 A 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 A 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 A 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 A 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 A 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 A 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 A 225 GLY LYS GLY LYS VAL ILE LYS LEU LEU LYS GLU LYS PHE SEQRES 14 A 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 A 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 A 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 A 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 A 225 GLU LEU GLU GLU SEQRES 1 B 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 B 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 B 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 B 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 B 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 B 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 B 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 B 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 B 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 B 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 B 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 B 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 B 225 GLY LYS GLY LYS VAL ILE LYS LEU LEU LYS GLU LYS PHE SEQRES 14 B 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 B 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 B 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 B 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 B 225 GLU LEU GLU GLU HET CL A1500 1 HET CL A1503 1 HET CL A1505 1 HET CA A2001 1 HET CL B1502 1 HET CL B1506 1 HET CL B1507 1 HET CA B2002 1 HET CA B2003 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 3 CL 6(CL 1-) FORMUL 6 CA 3(CA 2+) FORMUL 12 HOH *390(H2 O) HELIX 1 1 SER A 5 ALA A 14 1 10 HELIX 2 2 GLU A 29 CYS A 38 1 10 HELIX 3 3 PRO A 57 GLN A 70 1 14 HELIX 4 4 SER A 72 GLN A 83 1 12 HELIX 5 5 GLY A 90 ARG A 101 1 12 HELIX 6 6 ARG A 113 LEU A 123 1 11 HELIX 7 7 PRO A 126 THR A 128 5 3 HELIX 8 8 GLN A 150 GLU A 154 5 5 HELIX 9 9 GLY A 156 HIS A 170 1 15 HELIX 10 10 GLY A 180 GLU A 185 1 6 HELIX 11 11 ARG A 202 ALA A 209 1 8 HELIX 12 12 ASP A 215 LEU A 220 5 6 HELIX 13 13 SER B 5 LEU B 10 1 6 HELIX 14 14 GLU B 29 CYS B 38 1 10 HELIX 15 15 PRO B 57 GLN B 70 1 14 HELIX 16 16 SER B 72 GLN B 83 1 12 HELIX 17 17 GLY B 90 ARG B 101 1 12 HELIX 18 18 ARG B 113 LEU B 123 1 11 HELIX 19 19 PRO B 126 THR B 128 5 3 HELIX 20 20 GLN B 150 GLU B 154 5 5 HELIX 21 21 GLY B 156 HIS B 170 1 15 HELIX 22 22 GLY B 180 ALA B 186 1 7 HELIX 23 23 ARG B 202 ASP B 207 1 6 HELIX 24 24 ASP B 215 GLY B 221 1 7 SHEET 1 A 6 VAL A 130 ASN A 133 0 SHEET 2 A 6 GLN A 104 PHE A 112 1 N LEU A 107 O PHE A 131 SHEET 3 A 6 ALA A 16 ASP A 20 1 N PHE A 19 O PHE A 106 SHEET 4 A 6 ILE A 174 GLY A 178 1 O ILE A 175 N CYS A 18 SHEET 5 A 6 ALA A 192 PHE A 196 1 O ILE A 194 N MET A 176 SHEET 6 A 6 TRP A 211 ILE A 213 1 O TRP A 211 N GLY A 195 SHEET 1 B 2 LEU A 135 PHE A 137 0 SHEET 2 B 2 TYR A 143 PHE A 146 -1 O GLY A 145 N LYS A 136 SHEET 1 C 6 VAL B 130 ASN B 133 0 SHEET 2 C 6 GLN B 104 PHE B 112 1 N LEU B 107 O PHE B 131 SHEET 3 C 6 ALA B 16 ASP B 20 1 N PHE B 19 O PHE B 106 SHEET 4 C 6 ILE B 174 GLY B 178 1 O ILE B 175 N CYS B 18 SHEET 5 C 6 ALA B 192 PHE B 196 1 O ALA B 192 N MET B 176 SHEET 6 C 6 TYR B 212 ILE B 213 1 O ILE B 213 N GLY B 195 SHEET 1 D 2 LEU B 135 PHE B 137 0 SHEET 2 D 2 TYR B 143 PHE B 146 -1 O ALA B 144 N LYS B 136 LINK OD1 ASP A 20 CA CA A2001 1555 1555 2.37 LINK OD2 ASP A 20 CA CA A2001 1555 1555 2.77 LINK O ASP A 22 CA CA A2001 1555 1555 2.31 LINK OD2 ASP A 179 CA CA A2001 1555 1555 2.30 LINK O HOH A1026 CA CA A2001 1555 1555 2.33 LINK O HOH A1028 CA CA A2001 1555 1555 2.44 LINK O HOH A1069 CA CA A2001 1555 1555 2.37 LINK OD1 ASP B 20 CA CA B2002 1555 1555 2.23 LINK OD2 ASP B 20 CA CA B2002 1555 1555 2.94 LINK O ASP B 22 CA CA B2002 1555 1555 2.29 LINK OD1 ASP B 179 CA CA B2002 1555 1555 2.33 LINK O GLU B 185 CA CA B2003 1555 1555 3.18 LINK O PRO B 188 CA CA B2003 1555 1555 2.38 LINK O HOH B1021 CA CA B2002 1555 1555 2.49 LINK O HOH B1068 CA CA B2002 1555 1555 2.41 LINK O HOH B1117 CA CA B2002 1555 1555 2.30 LINK O HOH B1137 CA CA B2003 3655 1555 2.34 LINK O HOH B1222 CA CA B2003 1555 1555 2.28 LINK O HOH B1223 CA CA B2003 3655 1555 2.46 LINK O HOH B1246 CA CA B2003 1555 1555 3.23 LINK O HOH B1401 CA CA B2003 1555 1555 2.39 CISPEP 1 CYS A 187 PRO A 188 0 -0.01 CISPEP 2 PRO A 188 PRO A 189 0 0.50 CISPEP 3 CYS B 187 PRO B 188 0 -0.01 CISPEP 4 PRO B 188 PRO B 189 0 0.53 SITE 1 AC1 3 GLY A 110 LYS A 158 HOH A1028 SITE 1 AC2 4 PHE B 112 SER B 114 LEU B 135 HOH B1053 SITE 1 AC3 2 SER A 114 LEU A 135 SITE 1 AC4 4 GLY A 30 GLY A 111 PHE A 112 ILE A 115 SITE 1 AC5 4 GLY B 30 GLY B 111 PHE B 112 HOH B1072 SITE 1 AC6 4 GLY B 110 LYS B 158 HOH B1068 HOH B1183 SITE 1 AC7 6 ASP A 20 ASP A 22 ASP A 179 HOH A1026 SITE 2 AC7 6 HOH A1028 HOH A1069 SITE 1 AC8 6 ASP B 20 ASP B 22 ASP B 179 HOH B1021 SITE 2 AC8 6 HOH B1068 HOH B1117 SITE 1 AC9 6 GLU B 185 PRO B 188 HOH B1137 HOH B1222 SITE 2 AC9 6 HOH B1223 HOH B1401 CRYST1 49.033 130.249 157.293 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006358 0.00000