HEADER HYDROLASE 21-JAN-03 1NQJ TITLE CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLG COLLAGENASE TITLE 2 COLLAGEN-BINDING DOMAIN 3B AT 1.0 ANGSTROM RESOLUTION IN ABSENCE OF TITLE 3 CALCIUM CAVEAT 1NQJ THERE ARE CHIRALITY ERRORS IN CHAINS A AND B. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS 1 COLLAGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COLLAGEN-BINDING DOMAIN; COMPND 5 EC: 3.4.24.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 3 ORGANISM_TAXID: 1498; SOURCE 4 GENE: COLG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-2 KEYWDS BETA SANDWICH, METALLOPROTEASE, COLLAGEN-BINDING DOMAIN, LITHIUM, KEYWDS 2 CHLORINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.WILSON,O.MATSUSHITA,A.OKABE,J.SAKON REVDAT 3 14-FEB-24 1NQJ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1NQJ 1 VERSN REVDAT 1 15-APR-03 1NQJ 0 JRNL AUTH J.J.WILSON,O.MATSUSHITA,A.OKABE,J.SAKON JRNL TITL A BACTERIAL COLLAGEN-BINDING DOMAIN WITH NOVEL JRNL TITL 2 CALCIUM-BINDING MOTIF CONTROLS DOMAIN ORIENTATION JRNL REF EMBO J. V. 22 1743 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12682007 JRNL DOI 10.1093/EMBOJ/CDG172 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.142 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.140 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 10518 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 86824 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.119 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.117 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 8193 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 81317 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2066.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1650.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 40 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 20305 REMARK 3 NUMBER OF RESTRAINTS : 37831 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.035 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.030 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.082 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.098 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.044 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.044 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.060 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105185 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.983 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.010 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31800 REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LITHIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.85400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 890 REMARK 465 GLY A 891 REMARK 465 PRO A 892 REMARK 465 GLY A 893 REMARK 465 ASN A 894 REMARK 465 GLU A 895 REMARK 465 LYS A 896 REMARK 465 LEU A 897 REMARK 465 LYS A 898 REMARK 465 GLU A 899 REMARK 465 LYS A 900 REMARK 465 GLU A 901 REMARK 465 ASN A 902 REMARK 465 ASN A 903 REMARK 465 ASP A 904 REMARK 465 SER A 905 REMARK 465 SER A 906 REMARK 465 ASP A 907 REMARK 465 ASN A 963 REMARK 465 ILE A 964 REMARK 465 ASN A 965 REMARK 465 GLY B 890 REMARK 465 GLY B 891 REMARK 465 PRO B 892 REMARK 465 GLY B 893 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 908 N CA CB CG CD CE NZ REMARK 470 ASP A 966 N CA CB CG OD1 OD2 REMARK 470 ASN B 894 N CA CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG23 THR B 910 O TYR B 931 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 922 CB SER A 922 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 919 CG - SD - CE ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 927 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 927 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 929 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 929 CD - NE - CZ ANGL. DEV. = 31.1 DEGREES REMARK 500 ARG A 929 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 929 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 929 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 985 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 GLU B 899 CB - CG - CD ANGL. DEV. = 28.0 DEGREES REMARK 500 ARG B 929 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 929 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU B 951 OE1 - CD - OE2 ANGL. DEV. = -14.0 DEGREES REMARK 500 GLU B 951 CG - CD - OE1 ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG B 967 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 985 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 985 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 985 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 985 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 GLU B1003 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 964 -63.28 -106.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI A1010 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 922 O REMARK 620 2 ASP A 927 OD2 79.8 REMARK 620 3 ASP A 930 OD1 117.7 104.8 REMARK 620 4 ASP A 930 OD2 89.7 139.8 47.1 REMARK 620 5 HOH A2106 O 105.7 155.1 94.1 65.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI B1011 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 922 O REMARK 620 2 ASP B 927 OD2 93.3 REMARK 620 3 ASP B 930 OD1 117.2 102.1 REMARK 620 4 ASP B 930 OD2 82.4 149.9 55.4 REMARK 620 5 HOH B2285 O 102.9 111.0 125.7 99.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI B1010 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 927 OD1 REMARK 620 2 ASP B 927 OD2 46.4 REMARK 620 3 ARG B 929 O 99.8 140.3 REMARK 620 4 ASP B 930 OD1 115.2 78.1 108.3 REMARK 620 5 HOH B2051 O 119.0 107.6 107.9 106.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI B 1011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NQD RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CALCIUM IONS BOUND. DBREF 1NQJ A 893 1008 UNP Q9S0X0 Q9S0X0_CLOHI 1003 1118 DBREF 1NQJ B 893 1008 UNP Q9S0X0 Q9S0X0_CLOHI 1003 1118 SEQADV 1NQJ GLY A 890 UNP Q9S0X0 CLONING ARTIFACT SEQADV 1NQJ GLY A 891 UNP Q9S0X0 CLONING ARTIFACT SEQADV 1NQJ PRO A 892 UNP Q9S0X0 CLONING ARTIFACT SEQADV 1NQJ GLY B 890 UNP Q9S0X0 CLONING ARTIFACT SEQADV 1NQJ GLY B 891 UNP Q9S0X0 CLONING ARTIFACT SEQADV 1NQJ PRO B 892 UNP Q9S0X0 CLONING ARTIFACT SEQRES 1 A 119 GLY GLY PRO GLY ASN GLU LYS LEU LYS GLU LYS GLU ASN SEQRES 2 A 119 ASN ASP SER SER ASP LYS ALA THR VAL ILE PRO ASN PHE SEQRES 3 A 119 ASN THR THR MET GLN GLY SER LEU LEU GLY ASP ASP SER SEQRES 4 A 119 ARG ASP TYR TYR SER PHE GLU VAL LYS GLU GLU GLY GLU SEQRES 5 A 119 VAL ASN ILE GLU LEU ASP LYS LYS ASP GLU PHE GLY VAL SEQRES 6 A 119 THR TRP THR LEU HIS PRO GLU SER ASN ILE ASN ASP ARG SEQRES 7 A 119 ILE THR TYR GLY GLN VAL ASP GLY ASN LYS VAL SER ASN SEQRES 8 A 119 LYS VAL LYS LEU ARG PRO GLY LYS TYR TYR LEU LEU VAL SEQRES 9 A 119 TYR LYS TYR SER GLY SER GLY ASN TYR GLU LEU ARG VAL SEQRES 10 A 119 ASN LYS SEQRES 1 B 119 GLY GLY PRO GLY ASN GLU LYS LEU LYS GLU LYS GLU ASN SEQRES 2 B 119 ASN ASP SER SER ASP LYS ALA THR VAL ILE PRO ASN PHE SEQRES 3 B 119 ASN THR THR MET GLN GLY SER LEU LEU GLY ASP ASP SER SEQRES 4 B 119 ARG ASP TYR TYR SER PHE GLU VAL LYS GLU GLU GLY GLU SEQRES 5 B 119 VAL ASN ILE GLU LEU ASP LYS LYS ASP GLU PHE GLY VAL SEQRES 6 B 119 THR TRP THR LEU HIS PRO GLU SER ASN ILE ASN ASP ARG SEQRES 7 B 119 ILE THR TYR GLY GLN VAL ASP GLY ASN LYS VAL SER ASN SEQRES 8 B 119 LYS VAL LYS LEU ARG PRO GLY LYS TYR TYR LEU LEU VAL SEQRES 9 B 119 TYR LYS TYR SER GLY SER GLY ASN TYR GLU LEU ARG VAL SEQRES 10 B 119 ASN LYS HET CL A1009 1 HET LI A1010 1 HET CL B1009 1 HET LI B1010 1 HET LI B1011 1 HETNAM CL CHLORIDE ION HETNAM LI LITHIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 4 LI 3(LI 1+) FORMUL 8 HOH *388(H2 O) HELIX 1 1 LYS B 896 ALA B 909 1 14 SHEET 1 A 5 THR A 910 VAL A 911 0 SHEET 2 A 5 ARG A 929 VAL A 936 1 O TYR A 931 N THR A 910 SHEET 3 A 5 GLY A 987 SER A 997 -1 O GLY A 987 N VAL A 936 SHEET 4 A 5 GLY A 953 PRO A 960 -1 N THR A 957 O LEU A 992 SHEET 5 A 5 THR A 969 TYR A 970 -1 O THR A 969 N LEU A 958 SHEET 1 B 5 MET A 919 LEU A 923 0 SHEET 2 B 5 GLY A1000 ASN A1007 -1 O GLY A1000 N LEU A 923 SHEET 3 B 5 GLY A 940 LYS A 948 -1 N ASN A 943 O ASN A1007 SHEET 4 B 5 LYS A 977 LEU A 984 -1 O VAL A 978 N LEU A 946 SHEET 5 B 5 GLN A 972 ASP A 974 -1 N ASP A 974 O LYS A 977 SHEET 1 C 5 THR B 910 VAL B 911 0 SHEET 2 C 5 ARG B 929 VAL B 936 1 O TYR B 931 N THR B 910 SHEET 3 C 5 GLY B 987 SER B 997 -1 O GLY B 987 N VAL B 936 SHEET 4 C 5 GLY B 953 PRO B 960 -1 N HIS B 959 O TYR B 990 SHEET 5 C 5 THR B 969 TYR B 970 -1 O THR B 969 N LEU B 958 SHEET 1 D 5 MET B 919 LEU B 923 0 SHEET 2 D 5 GLY B1000 ASN B1007 -1 O GLY B1000 N LEU B 923 SHEET 3 D 5 GLY B 940 LYS B 948 -1 N GLU B 945 O ARG B1005 SHEET 4 D 5 LYS B 977 LEU B 984 -1 O VAL B 982 N VAL B 942 SHEET 5 D 5 GLN B 972 ASP B 974 -1 N ASP B 974 O LYS B 977 LINK O SER A 922 LI LI A1010 1555 1555 2.03 LINK OD2BASP A 927 LI LI A1010 1555 1555 2.29 LINK OD1 ASP A 930 LI LI A1010 1555 1555 2.34 LINK OD2 ASP A 930 LI LI A1010 1555 1555 2.93 LINK LI LI A1010 O HOH A2106 1555 1555 2.10 LINK O SER B 922 LI LI B1011 1555 1555 1.98 LINK OD1 ASP B 927 LI LI B1010 1555 1555 1.94 LINK OD2 ASP B 927 LI LI B1010 1555 1555 3.06 LINK OD2 ASP B 927 LI LI B1011 1555 1555 2.09 LINK O ARG B 929 LI LI B1010 1555 1555 1.95 LINK OD1 ASP B 930 LI LI B1010 1555 1555 1.90 LINK OD1 ASP B 930 LI LI B1011 1555 1555 2.08 LINK OD2 ASP B 930 LI LI B1011 1555 1555 2.55 LINK LI LI B1010 O HOH B2051 1555 1555 1.97 LINK LI LI B1011 O HOH B2285 1555 1555 1.81 SITE 1 AC1 3 LYS A 937 GLU A 938 LYS A1008 SITE 1 AC2 4 SER A 922 ASP A 927 ASP A 930 HOH A2106 SITE 1 AC3 3 LYS B 937 GLU B 938 LYS B1008 SITE 1 AC4 5 ASP B 927 ARG B 929 ASP B 930 LI B1011 SITE 2 AC4 5 HOH B2051 SITE 1 AC5 5 SER B 922 ASP B 927 ASP B 930 LI B1010 SITE 2 AC5 5 HOH B2285 CRYST1 40.637 57.708 46.320 90.00 95.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024608 0.000000 0.002452 0.00000 SCALE2 0.000000 0.017329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021696 0.00000