data_1NR8 # _entry.id 1NR8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NR8 pdb_00001nr8 10.2210/pdb1nr8/pdb NDB UP0003 ? ? RCSB RCSB018138 ? ? WWPDB D_1000018138 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PDT 'AN ACHIRAL PNA-DNA NMR STRUCTURE' unspecified PDB 1PUP 'AN ACHIRAL PNA-PNA CRYSTAL STRUCTURE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NR8 _pdbx_database_status.recvd_initial_deposition_date 2003-01-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Menchise, V.' 1 'De Simone, G.' 2 'Tedeschi, T.' 3 'Corradini, R.' 4 'Sforza, S.' 5 'Marchelli, R.' 6 'Capasso, D.' 7 'Saviano, M.' 8 'Pedone, C.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Insights into peptide nucleic acid (PNA) structural features: The crystal structure of a D-lysine-based chiral PNA-DNA duplex ; Proc.Natl.Acad.Sci.USA 100 12021 12026 2003 PNASA6 US 0027-8424 0040 ? 14512516 10.1073/pnas.2034746100 1 ;Crystallization and preliminary X-ray diffraction studies of a D-Lysine-based chiral PNA-DNA duplex ; 'Acta Crystallogr.,Sect.D' 58 553 555 2002 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444902001427 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Menchise, V.' 1 ? primary 'De Simone, G.' 2 ? primary 'Tedeschi, T.' 3 ? primary 'Corradini, R.' 4 ? primary 'Sforza, S.' 5 ? primary 'Marchelli, R.' 6 ? primary 'Capasso, D.' 7 ? primary 'Saviano, M.' 8 ? primary 'Pedone, C.' 9 ? 1 'Menchise, V.' 10 ? 1 'De Simone, G.' 11 ? 1 'Corradini, R.' 12 ? 1 'Sforza, S.' 13 ? 1 'Sorrentino, S.' 14 ? 1 'Romanelli, A.' 15 ? 1 'Saviano, M.' 16 ? 1 'Pedone, C.' 17 ? # _cell.entry_id 1NR8 _cell.length_a 34.94 _cell.length_b 34.94 _cell.length_c 35.80 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NR8 _symmetry.space_group_name_H-M 'P 31' _symmetry.cell_setting trigonal _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 144 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*AP*GP*TP*GP*AP*TP*CP*TP*AP*C)-3'" 3044.017 1 ? ? ? DNA 2 polymer syn 'H-((GPN)*(TPN)*(APN)*(GPN)*(A66)*(T66)*(C66)*(APN)*(CPN)*(TPN))-NH2' 2883.044 1 ? ? ? 'peptide nucleic acid' 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DT)(DG)(DA)(DT)(DC)(DT)(DA)(DC)' AGTGATCTAC A ? 2 polydeoxyribonucleotide no yes '(GPN)(TPN)(APN)(GPN)(A66)(T66)(C66)(APN)(CPN)(TPN)(NH2)' XXXXXXXXXXX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DT n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DC n 2 1 GPN n 2 2 TPN n 2 3 APN n 2 4 GPN n 2 5 A66 n 2 6 T66 n 2 7 C66 n 2 8 APN n 2 9 CPN n 2 10 TPN n 2 11 NH2 n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1NR8 1NR8 ? ? ? 2 2 PDB 1NR8 1NR8 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NR8 A 1 ? 10 ? 1NR8 1 ? 10 ? 1 10 2 2 1NR8 B 1 ? 11 ? 1NR8 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A66 'L-peptide linking' . 2-AMINOETHYLLYSINE-CARBONYLMETHYLENE-ADENINE ? 'C15 H24 N8 O3' 364.403 APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 C66 'L-peptide linking' . 2-AMINOETHYLLYSINE-CARBONYLMETHYLENE-CYTOSINE ? 'C14 H24 N6 O4' 340.378 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 T66 'L-peptide linking' . 2-AMINOETHYLLYSINE-CARBONYLMETHYLENE-THYMINE ? 'C15 H25 N5 O5' 355.390 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 # _exptl.entry_id 1NR8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.description 1 31.5 1.81 ? ? 2 ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' 298 6.3 'PEG 8000, AMMONIUM ACETATE, SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' ? . 2 'VAPOR DIFFUSION, HANGING DROP' 298 6.0 'ISOPROPANOL, MAGNESIUM CHLORIDE, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' ? . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'AMMONIUM ACETATE' ? ? ? 1 2 1 'PEG 8000' ? ? ? 1 3 1 'Na CACODYLATE' ? ? ? 1 4 2 'AMMONIUM ACETATE' ? ? ? 1 5 2 'PEG 8000' ? ? ? 2 6 1 MgCl2 ? ? ? 2 7 1 MES ? ? ? 2 8 1 ISOPROPANOL ? ? ? 2 9 2 MgCl2 ? ? ? 2 10 2 ISOPROPANOL ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2002-02-11 ? 2 CCD MARRESEARCH ? ? # _diffrn_radiation.diffrn_id 2 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.200 1.0 2 0.918 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID14-1' ESRF ID14-1 ? 1.200 2 SYNCHROTRON 'ELETTRA BEAMLINE 5.2R' ELETTRA 5.2R ? 0.918 # _reflns.entry_id 1NR8 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.66 _reflns.d_resolution_low 20.0 _reflns.number_all 5429 _reflns.number_obs 5429 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 15.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 2 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_all 95.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.185 _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 525 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 2 # _refine.entry_id 1NR8 _refine.ls_d_res_high 1.66 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 5429 _refine.ls_number_reflns_obs 5429 _refine.ls_number_reflns_R_free 579 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.214 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.228 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 10.7 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 211 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 494 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.11 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1NR8 _struct.title 'The crystal structure of a D-Lysine-based chiral PNA-DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NR8 _struct_keywords.pdbx_keywords 'DNA/PEPTIDE NUCLEIC ACID' _struct_keywords.text 'CHIRAL PEPTIDE NUCLEIC ACID, DOUBLE STRANDED HELIX, P-FORM, DNA-PEPTIDE NUCLEIC ACID COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GPN 1 C ? ? ? 1_555 B TPN 2 N ? ? B GPN 1 B TPN 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? B TPN 2 C ? ? ? 1_555 B APN 3 N ? ? B TPN 2 B APN 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? B APN 3 C ? ? ? 1_555 B GPN 4 N ? ? B APN 3 B GPN 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale one ? B GPN 4 C ? ? ? 1_555 B A66 5 "N1'" ? ? B GPN 4 B A66 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale one ? B A66 5 "C'" ? ? ? 1_555 B T66 6 "N1'" ? ? B A66 5 B T66 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale one ? B T66 6 "C'" ? ? ? 1_555 B C66 7 "N1'" ? ? B T66 6 B C66 7 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale7 covale both ? B C66 7 "C'" ? ? ? 1_555 B APN 8 N ? ? B C66 7 B APN 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale8 covale both ? B APN 8 C ? ? ? 1_555 B CPN 9 N ? ? B APN 8 B CPN 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? B CPN 9 C ? ? ? 1_555 B TPN 10 N ? ? B CPN 9 B TPN 10 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? B TPN 10 C ? ? ? 1_555 B NH2 11 N ? ? B TPN 10 B NH2 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? B GPN 4 N3 ? ? ? 1_555 C MG . MG ? ? B GPN 4 B MG 9001 1_555 ? ? ? ? ? ? ? 2.851 ? ? metalc2 metalc ? ? B A66 5 "N1'" ? ? ? 1_555 C MG . MG ? ? B A66 5 B MG 9001 1_555 ? ? ? ? ? ? ? 3.095 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 9001 B HOH 9017 1_555 ? ? ? ? ? ? ? 2.810 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B TPN 10 N3 ? ? A DA 1 B TPN 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B TPN 10 O4 ? ? A DA 1 B TPN 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B CPN 9 N3 ? ? A DG 2 B CPN 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B CPN 9 O2 ? ? A DG 2 B CPN 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B CPN 9 N4 ? ? A DG 2 B CPN 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B APN 8 N1 ? ? A DT 3 B APN 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B APN 8 N6 ? ? A DT 3 B APN 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B GPN 4 N1 ? ? A DC 7 B GPN 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B GPN 4 O6 ? ? A DC 7 B GPN 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B GPN 4 N2 ? ? A DC 7 B GPN 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B APN 3 N1 ? ? A DT 8 B APN 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B APN 3 N6 ? ? A DT 8 B APN 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B TPN 2 N3 ? ? A DA 9 B TPN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B TPN 2 O4 ? ? A DA 9 B TPN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B GPN 1 N1 ? ? A DC 10 B GPN 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B GPN 1 O6 ? ? A DC 10 B GPN 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B GPN 1 N2 ? ? A DC 10 B GPN 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 9001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE MG B 9001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GPN B 4 ? GPN B 4 . ? 1_555 ? 2 AC1 3 A66 B 5 ? A66 B 5 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH B 9017 . ? 1_555 ? # _database_PDB_matrix.entry_id 1NR8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NR8 _atom_sites.fract_transf_matrix[1][1] 0.028622 _atom_sites.fract_transf_matrix[1][2] 0.016525 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033050 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027935 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n B 2 1 GPN 1 1 1 GPN GPN B . n B 2 2 TPN 2 2 2 TPN TPN B . n B 2 3 APN 3 3 3 APN APN B . n B 2 4 GPN 4 4 4 GPN GPN B . n B 2 5 A66 5 5 5 A66 A66 B . n B 2 6 T66 6 6 6 T66 T66 B . n B 2 7 C66 7 7 7 C66 C66 B . n B 2 8 APN 8 8 8 APN APN B . n B 2 9 CPN 9 9 9 CPN CPN B . n B 2 10 TPN 10 10 10 TPN TPN B . n B 2 11 NH2 11 11 11 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 9001 9001 MG MG B . D 4 HOH 1 11 5 HOH HOH A . D 4 HOH 2 12 9 HOH HOH A . D 4 HOH 3 13 11 HOH HOH A . D 4 HOH 4 14 12 HOH HOH A . D 4 HOH 5 15 13 HOH HOH A . D 4 HOH 6 16 14 HOH HOH A . D 4 HOH 7 17 17 HOH HOH A . D 4 HOH 8 18 22 HOH HOH A . D 4 HOH 9 19 24 HOH HOH A . D 4 HOH 10 20 25 HOH HOH A . D 4 HOH 11 21 26 HOH HOH A . D 4 HOH 12 22 28 HOH HOH A . D 4 HOH 13 23 29 HOH HOH A . D 4 HOH 14 24 30 HOH HOH A . D 4 HOH 15 25 33 HOH HOH A . D 4 HOH 16 26 34 HOH HOH A . D 4 HOH 17 27 35 HOH HOH A . D 4 HOH 18 28 36 HOH HOH A . D 4 HOH 19 29 37 HOH HOH A . D 4 HOH 20 30 38 HOH HOH A . D 4 HOH 21 31 39 HOH HOH A . D 4 HOH 22 32 40 HOH HOH A . D 4 HOH 23 33 41 HOH HOH A . D 4 HOH 24 34 42 HOH HOH A . D 4 HOH 25 35 47 HOH HOH A . D 4 HOH 26 36 51 HOH HOH A . D 4 HOH 27 37 52 HOH HOH A . D 4 HOH 28 38 54 HOH HOH A . D 4 HOH 29 39 55 HOH HOH A . D 4 HOH 30 40 56 HOH HOH A . D 4 HOH 31 41 57 HOH HOH A . D 4 HOH 32 42 61 HOH HOH A . D 4 HOH 33 43 62 HOH HOH A . D 4 HOH 34 44 63 HOH HOH A . D 4 HOH 35 45 66 HOH HOH A . D 4 HOH 36 46 67 HOH HOH A . D 4 HOH 37 47 68 HOH HOH A . D 4 HOH 38 48 69 HOH HOH A . D 4 HOH 39 49 70 HOH HOH A . D 4 HOH 40 50 72 HOH HOH A . D 4 HOH 41 51 75 HOH HOH A . D 4 HOH 42 52 79 HOH HOH A . E 4 HOH 1 9002 1 HOH HOH B . E 4 HOH 2 9003 2 HOH HOH B . E 4 HOH 3 9004 3 HOH HOH B . E 4 HOH 4 9005 4 HOH HOH B . E 4 HOH 5 9006 6 HOH HOH B . E 4 HOH 6 9007 7 HOH HOH B . E 4 HOH 7 9008 8 HOH HOH B . E 4 HOH 8 9009 10 HOH HOH B . E 4 HOH 9 9010 15 HOH HOH B . E 4 HOH 10 9011 16 HOH HOH B . E 4 HOH 11 9012 18 HOH HOH B . E 4 HOH 12 9013 19 HOH HOH B . E 4 HOH 13 9014 20 HOH HOH B . E 4 HOH 14 9015 21 HOH HOH B . E 4 HOH 15 9016 23 HOH HOH B . E 4 HOH 16 9017 27 HOH HOH B . E 4 HOH 17 9018 31 HOH HOH B . E 4 HOH 18 9019 32 HOH HOH B . E 4 HOH 19 9020 43 HOH HOH B . E 4 HOH 20 9021 44 HOH HOH B . E 4 HOH 21 9022 45 HOH HOH B . E 4 HOH 22 9023 46 HOH HOH B . E 4 HOH 23 9024 48 HOH HOH B . E 4 HOH 24 9025 49 HOH HOH B . E 4 HOH 25 9026 50 HOH HOH B . E 4 HOH 26 9027 53 HOH HOH B . E 4 HOH 27 9028 58 HOH HOH B . E 4 HOH 28 9029 59 HOH HOH B . E 4 HOH 29 9030 60 HOH HOH B . E 4 HOH 30 9031 64 HOH HOH B . E 4 HOH 31 9032 65 HOH HOH B . E 4 HOH 32 9033 71 HOH HOH B . E 4 HOH 33 9034 73 HOH HOH B . E 4 HOH 34 9035 74 HOH HOH B . E 4 HOH 35 9036 76 HOH HOH B . E 4 HOH 36 9037 77 HOH HOH B . E 4 HOH 37 9038 78 HOH HOH B . E 4 HOH 38 9039 80 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B GPN 1 B GPN 1 ? DG ? 2 B TPN 2 B TPN 2 ? DT ? 3 B APN 3 B APN 3 ? DA ? 4 B GPN 4 B GPN 4 ? DG ? 5 B APN 8 B APN 8 ? DA ? 6 B CPN 9 B CPN 9 ? DC ? 7 B TPN 10 B TPN 10 ? DT ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? B GPN 4 ? B GPN 4 ? 1_555 MG ? C MG . ? B MG 9001 ? 1_555 "N1'" ? B A66 5 ? B A66 5 ? 1_555 120.1 ? 2 N3 ? B GPN 4 ? B GPN 4 ? 1_555 MG ? C MG . ? B MG 9001 ? 1_555 O ? E HOH . ? B HOH 9017 ? 1_555 90.8 ? 3 "N1'" ? B A66 5 ? B A66 5 ? 1_555 MG ? C MG . ? B MG 9001 ? 1_555 O ? E HOH . ? B HOH 9017 ? 1_555 117.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-28 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement 1.1 ? 4 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 9 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 0 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id NH2 _pdbx_unobs_or_zero_occ_residues.auth_seq_id 11 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id NH2 _pdbx_unobs_or_zero_occ_residues.label_seq_id 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A66 "C8'" C N N 1 A66 "C7'" C N N 2 A66 "O7'" O N N 3 A66 "C5'" C N R 4 A66 "C'" C N N 5 A66 "O1'" O N N 6 A66 OXT O N N 7 A66 "N4'" N N N 8 A66 "C3'" C N N 9 A66 "C2'" C N N 10 A66 "N1'" N N N 11 A66 N9 N Y N 12 A66 C8 C Y N 13 A66 N7 N Y N 14 A66 C5 C Y N 15 A66 C6 C Y N 16 A66 N6 N N N 17 A66 N1 N Y N 18 A66 C2 C Y N 19 A66 N3 N Y N 20 A66 C4 C Y N 21 A66 CB C N N 22 A66 CG C N N 23 A66 CD C N N 24 A66 CE C N N 25 A66 NZ N N N 26 A66 "H8'1" H N N 27 A66 "H8'2" H N N 28 A66 "H5'1" H N N 29 A66 HXT H N N 30 A66 "H3'1" H N N 31 A66 "H3'2" H N N 32 A66 "H2'1" H N N 33 A66 "H2'2" H N N 34 A66 "H1'1" H N N 35 A66 "H1'2" H N N 36 A66 H8 H N N 37 A66 HN61 H N N 38 A66 HN62 H N N 39 A66 H2 H N N 40 A66 HB1 H N N 41 A66 HB2 H N N 42 A66 HG1 H N N 43 A66 HG2 H N N 44 A66 HD1 H N N 45 A66 HD2 H N N 46 A66 HE1 H N N 47 A66 HE2 H N N 48 A66 HZ1 H N N 49 A66 HZ2 H N N 50 APN "C8'" C N N 51 APN "C7'" C N N 52 APN "O7'" O N N 53 APN "C5'" C N N 54 APN C C N N 55 APN O O N N 56 APN OXT O N N 57 APN "N4'" N N N 58 APN "C3'" C N N 59 APN "C2'" C N N 60 APN N N N N 61 APN N9 N Y N 62 APN C8 C Y N 63 APN N7 N Y N 64 APN C5 C Y N 65 APN C6 C Y N 66 APN N6 N N N 67 APN N1 N Y N 68 APN C2 C Y N 69 APN N3 N Y N 70 APN C4 C Y N 71 APN "H8'1" H N N 72 APN "H8'2" H N N 73 APN "H5'1" H N N 74 APN "H5'2" H N N 75 APN HXT H N N 76 APN "H3'1" H N N 77 APN "H3'2" H N N 78 APN "H2'1" H N N 79 APN "H2'2" H N N 80 APN H H N N 81 APN H2 H N N 82 APN H3 H N N 83 APN H8 H N N 84 APN HN61 H N N 85 APN HN62 H N N 86 APN H21 H N N 87 C66 "C8'" C N N 88 C66 "C7'" C N N 89 C66 "O7'" O N N 90 C66 "C5'" C N R 91 C66 "C'" C N N 92 C66 "O1'" O N N 93 C66 OXT O N N 94 C66 "N4'" N N N 95 C66 "C3'" C N N 96 C66 "C2'" C N N 97 C66 "N1'" N N N 98 C66 N1 N N N 99 C66 C2 C N N 100 C66 N3 N N N 101 C66 C4 C N N 102 C66 C5 C N N 103 C66 C6 C N N 104 C66 O2 O N N 105 C66 N4 N N N 106 C66 CB C N N 107 C66 CG C N N 108 C66 CD C N N 109 C66 CE C N N 110 C66 NZ N N N 111 C66 "H8'1" H N N 112 C66 "H8'2" H N N 113 C66 "H5'1" H N N 114 C66 HXT H N N 115 C66 "H3'1" H N N 116 C66 "H3'2" H N N 117 C66 "H2'1" H N N 118 C66 "H2'2" H N N 119 C66 "H1'1" H N N 120 C66 "H1'2" H N N 121 C66 H5 H N N 122 C66 H6 H N N 123 C66 HN41 H N N 124 C66 HN42 H N N 125 C66 HB1 H N N 126 C66 HB2 H N N 127 C66 HG1 H N N 128 C66 HG2 H N N 129 C66 HD1 H N N 130 C66 HD2 H N N 131 C66 HE1 H N N 132 C66 HE2 H N N 133 C66 HZ1 H N N 134 C66 HZ2 H N N 135 CPN "C8'" C N N 136 CPN "C7'" C N N 137 CPN "O7'" O N N 138 CPN "C5'" C N N 139 CPN C C N N 140 CPN O O N N 141 CPN OXT O N N 142 CPN "N4'" N N N 143 CPN "C3'" C N N 144 CPN "C2'" C N N 145 CPN N N N N 146 CPN N1 N N N 147 CPN C2 C N N 148 CPN N3 N N N 149 CPN C4 C N N 150 CPN C5 C N N 151 CPN C6 C N N 152 CPN O2 O N N 153 CPN N4 N N N 154 CPN "H8'1" H N N 155 CPN "H8'2" H N N 156 CPN "H5'1" H N N 157 CPN "H5'2" H N N 158 CPN HXT H N N 159 CPN "H3'1" H N N 160 CPN "H3'2" H N N 161 CPN "H2'1" H N N 162 CPN "H2'2" H N N 163 CPN H H N N 164 CPN H2 H N N 165 CPN H3 H N N 166 CPN H5 H N N 167 CPN H6 H N N 168 CPN HN41 H N N 169 CPN HN42 H N N 170 DA OP3 O N N 171 DA P P N N 172 DA OP1 O N N 173 DA OP2 O N N 174 DA "O5'" O N N 175 DA "C5'" C N N 176 DA "C4'" C N R 177 DA "O4'" O N N 178 DA "C3'" C N S 179 DA "O3'" O N N 180 DA "C2'" C N N 181 DA "C1'" C N R 182 DA N9 N Y N 183 DA C8 C Y N 184 DA N7 N Y N 185 DA C5 C Y N 186 DA C6 C Y N 187 DA N6 N N N 188 DA N1 N Y N 189 DA C2 C Y N 190 DA N3 N Y N 191 DA C4 C Y N 192 DA HOP3 H N N 193 DA HOP2 H N N 194 DA "H5'" H N N 195 DA "H5''" H N N 196 DA "H4'" H N N 197 DA "H3'" H N N 198 DA "HO3'" H N N 199 DA "H2'" H N N 200 DA "H2''" H N N 201 DA "H1'" H N N 202 DA H8 H N N 203 DA H61 H N N 204 DA H62 H N N 205 DA H2 H N N 206 DC OP3 O N N 207 DC P P N N 208 DC OP1 O N N 209 DC OP2 O N N 210 DC "O5'" O N N 211 DC "C5'" C N N 212 DC "C4'" C N R 213 DC "O4'" O N N 214 DC "C3'" C N S 215 DC "O3'" O N N 216 DC "C2'" C N N 217 DC "C1'" C N R 218 DC N1 N N N 219 DC C2 C N N 220 DC O2 O N N 221 DC N3 N N N 222 DC C4 C N N 223 DC N4 N N N 224 DC C5 C N N 225 DC C6 C N N 226 DC HOP3 H N N 227 DC HOP2 H N N 228 DC "H5'" H N N 229 DC "H5''" H N N 230 DC "H4'" H N N 231 DC "H3'" H N N 232 DC "HO3'" H N N 233 DC "H2'" H N N 234 DC "H2''" H N N 235 DC "H1'" H N N 236 DC H41 H N N 237 DC H42 H N N 238 DC H5 H N N 239 DC H6 H N N 240 DG OP3 O N N 241 DG P P N N 242 DG OP1 O N N 243 DG OP2 O N N 244 DG "O5'" O N N 245 DG "C5'" C N N 246 DG "C4'" C N R 247 DG "O4'" O N N 248 DG "C3'" C N S 249 DG "O3'" O N N 250 DG "C2'" C N N 251 DG "C1'" C N R 252 DG N9 N Y N 253 DG C8 C Y N 254 DG N7 N Y N 255 DG C5 C Y N 256 DG C6 C N N 257 DG O6 O N N 258 DG N1 N N N 259 DG C2 C N N 260 DG N2 N N N 261 DG N3 N N N 262 DG C4 C Y N 263 DG HOP3 H N N 264 DG HOP2 H N N 265 DG "H5'" H N N 266 DG "H5''" H N N 267 DG "H4'" H N N 268 DG "H3'" H N N 269 DG "HO3'" H N N 270 DG "H2'" H N N 271 DG "H2''" H N N 272 DG "H1'" H N N 273 DG H8 H N N 274 DG H1 H N N 275 DG H21 H N N 276 DG H22 H N N 277 DT OP3 O N N 278 DT P P N N 279 DT OP1 O N N 280 DT OP2 O N N 281 DT "O5'" O N N 282 DT "C5'" C N N 283 DT "C4'" C N R 284 DT "O4'" O N N 285 DT "C3'" C N S 286 DT "O3'" O N N 287 DT "C2'" C N N 288 DT "C1'" C N R 289 DT N1 N N N 290 DT C2 C N N 291 DT O2 O N N 292 DT N3 N N N 293 DT C4 C N N 294 DT O4 O N N 295 DT C5 C N N 296 DT C7 C N N 297 DT C6 C N N 298 DT HOP3 H N N 299 DT HOP2 H N N 300 DT "H5'" H N N 301 DT "H5''" H N N 302 DT "H4'" H N N 303 DT "H3'" H N N 304 DT "HO3'" H N N 305 DT "H2'" H N N 306 DT "H2''" H N N 307 DT "H1'" H N N 308 DT H3 H N N 309 DT H71 H N N 310 DT H72 H N N 311 DT H73 H N N 312 DT H6 H N N 313 GPN "C8'" C N N 314 GPN "C7'" C N N 315 GPN "O7'" O N N 316 GPN "C5'" C N N 317 GPN C C N N 318 GPN O O N N 319 GPN OXT O N N 320 GPN "N4'" N N N 321 GPN "C3'" C N N 322 GPN "C2'" C N N 323 GPN N N N N 324 GPN N9 N Y N 325 GPN C8 C Y N 326 GPN N7 N Y N 327 GPN C5 C Y N 328 GPN C6 C N N 329 GPN O6 O N N 330 GPN N1 N N N 331 GPN C2 C N N 332 GPN N2 N N N 333 GPN N3 N N N 334 GPN C4 C Y N 335 GPN "H8'1" H N N 336 GPN "H8'2" H N N 337 GPN "H5'1" H N N 338 GPN "H5'2" H N N 339 GPN HXT H N N 340 GPN "H3'1" H N N 341 GPN "H3'2" H N N 342 GPN "H2'1" H N N 343 GPN "H2'2" H N N 344 GPN H H N N 345 GPN H2 H N N 346 GPN H3 H N N 347 GPN H8 H N N 348 GPN HN1 H N N 349 GPN HN21 H N N 350 GPN HN22 H N N 351 HOH O O N N 352 HOH H1 H N N 353 HOH H2 H N N 354 MG MG MG N N 355 NH2 N N N N 356 NH2 HN1 H N N 357 NH2 HN2 H N N 358 T66 "C8'" C N N 359 T66 "C7'" C N N 360 T66 "O7'" O N N 361 T66 "C5'" C N R 362 T66 "C'" C N N 363 T66 "O1'" O N N 364 T66 OXT O N N 365 T66 "N4'" N N N 366 T66 "C3'" C N N 367 T66 "C2'" C N N 368 T66 "N1'" N N N 369 T66 N1 N N N 370 T66 C6 C N N 371 T66 C2 C N N 372 T66 O2 O N N 373 T66 N3 N N N 374 T66 C4 C N N 375 T66 O4 O N N 376 T66 C5 C N N 377 T66 C5M C N N 378 T66 CB C N N 379 T66 CG C N N 380 T66 CD C N N 381 T66 CE C N N 382 T66 NZ N N N 383 T66 "H8'1" H N N 384 T66 "H8'2" H N N 385 T66 "H5'1" H N N 386 T66 HXT H N N 387 T66 "H3'1" H N N 388 T66 "H3'2" H N N 389 T66 "H2'1" H N N 390 T66 "H2'2" H N N 391 T66 "H1'1" H N N 392 T66 "H1'2" H N N 393 T66 H6 H N N 394 T66 HN3 H N N 395 T66 HM51 H N N 396 T66 HM52 H N N 397 T66 HM53 H N N 398 T66 HB1 H N N 399 T66 HB2 H N N 400 T66 HG1 H N N 401 T66 HG2 H N N 402 T66 HD1 H N N 403 T66 HD2 H N N 404 T66 HE1 H N N 405 T66 HE2 H N N 406 T66 HZ1 H N N 407 T66 HZ2 H N N 408 TPN "C8'" C N N 409 TPN "C7'" C N N 410 TPN "O7'" O N N 411 TPN "C5'" C N N 412 TPN C C N N 413 TPN O O N N 414 TPN OXT O N N 415 TPN "N4'" N N N 416 TPN "C3'" C N N 417 TPN "C2'" C N N 418 TPN N N N N 419 TPN N1 N N N 420 TPN C6 C N N 421 TPN C2 C N N 422 TPN O2 O N N 423 TPN N3 N N N 424 TPN C4 C N N 425 TPN O4 O N N 426 TPN C5 C N N 427 TPN C5M C N N 428 TPN "H8'1" H N N 429 TPN "H8'2" H N N 430 TPN "H5'1" H N N 431 TPN "H5'2" H N N 432 TPN HXT H N N 433 TPN "H3'1" H N N 434 TPN "H3'2" H N N 435 TPN "H2'1" H N N 436 TPN "H2'2" H N N 437 TPN H H N N 438 TPN H2 H N N 439 TPN H3 H N N 440 TPN H6 H N N 441 TPN HN3 H N N 442 TPN HM51 H N N 443 TPN HM52 H N N 444 TPN HM53 H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A66 "C8'" "C7'" sing N N 1 A66 "C8'" N9 sing N N 2 A66 "C8'" "H8'1" sing N N 3 A66 "C8'" "H8'2" sing N N 4 A66 "C7'" "O7'" doub N N 5 A66 "C7'" "N4'" sing N N 6 A66 "C5'" "C'" sing N N 7 A66 "C5'" "N4'" sing N N 8 A66 "C5'" CB sing N N 9 A66 "C5'" "H5'1" sing N N 10 A66 "C'" "O1'" doub N N 11 A66 "C'" OXT sing N N 12 A66 OXT HXT sing N N 13 A66 "N4'" "C3'" sing N N 14 A66 "C3'" "C2'" sing N N 15 A66 "C3'" "H3'1" sing N N 16 A66 "C3'" "H3'2" sing N N 17 A66 "C2'" "N1'" sing N N 18 A66 "C2'" "H2'1" sing N N 19 A66 "C2'" "H2'2" sing N N 20 A66 "N1'" "H1'1" sing N N 21 A66 "N1'" "H1'2" sing N N 22 A66 N9 C8 sing Y N 23 A66 N9 C4 sing Y N 24 A66 C8 N7 doub Y N 25 A66 C8 H8 sing N N 26 A66 N7 C5 sing Y N 27 A66 C5 C6 sing Y N 28 A66 C5 C4 doub Y N 29 A66 C6 N6 sing N N 30 A66 C6 N1 doub Y N 31 A66 N6 HN61 sing N N 32 A66 N6 HN62 sing N N 33 A66 N1 C2 sing Y N 34 A66 C2 N3 doub Y N 35 A66 C2 H2 sing N N 36 A66 N3 C4 sing Y N 37 A66 CB CG sing N N 38 A66 CB HB1 sing N N 39 A66 CB HB2 sing N N 40 A66 CG CD sing N N 41 A66 CG HG1 sing N N 42 A66 CG HG2 sing N N 43 A66 CD CE sing N N 44 A66 CD HD1 sing N N 45 A66 CD HD2 sing N N 46 A66 CE NZ sing N N 47 A66 CE HE1 sing N N 48 A66 CE HE2 sing N N 49 A66 NZ HZ1 sing N N 50 A66 NZ HZ2 sing N N 51 APN "C8'" "C7'" sing N N 52 APN "C8'" N9 sing N N 53 APN "C8'" "H8'1" sing N N 54 APN "C8'" "H8'2" sing N N 55 APN "C7'" "O7'" doub N N 56 APN "C7'" "N4'" sing N N 57 APN "C5'" C sing N N 58 APN "C5'" "N4'" sing N N 59 APN "C5'" "H5'1" sing N N 60 APN "C5'" "H5'2" sing N N 61 APN C O doub N N 62 APN C OXT sing N N 63 APN OXT HXT sing N N 64 APN "N4'" "C3'" sing N N 65 APN "C3'" "C2'" sing N N 66 APN "C3'" "H3'1" sing N N 67 APN "C3'" "H3'2" sing N N 68 APN "C2'" N sing N N 69 APN "C2'" "H2'1" sing N N 70 APN "C2'" "H2'2" sing N N 71 APN N H sing N N 72 APN N H2 sing N N 73 APN N H3 sing N N 74 APN N9 C8 sing Y N 75 APN N9 C4 sing Y N 76 APN C8 N7 doub Y N 77 APN C8 H8 sing N N 78 APN N7 C5 sing Y N 79 APN C5 C6 sing Y N 80 APN C5 C4 doub Y N 81 APN C6 N6 sing N N 82 APN C6 N1 doub Y N 83 APN N6 HN61 sing N N 84 APN N6 HN62 sing N N 85 APN N1 C2 sing Y N 86 APN C2 N3 doub Y N 87 APN C2 H21 sing N N 88 APN N3 C4 sing Y N 89 C66 "C8'" "C7'" sing N N 90 C66 "C8'" N1 sing N N 91 C66 "C8'" "H8'1" sing N N 92 C66 "C8'" "H8'2" sing N N 93 C66 "C7'" "O7'" doub N N 94 C66 "C7'" "N4'" sing N N 95 C66 "C5'" "C'" sing N N 96 C66 "C5'" "N4'" sing N N 97 C66 "C5'" CB sing N N 98 C66 "C5'" "H5'1" sing N N 99 C66 "C'" "O1'" doub N N 100 C66 "C'" OXT sing N N 101 C66 OXT HXT sing N N 102 C66 "N4'" "C3'" sing N N 103 C66 "C3'" "C2'" sing N N 104 C66 "C3'" "H3'1" sing N N 105 C66 "C3'" "H3'2" sing N N 106 C66 "C2'" "N1'" sing N N 107 C66 "C2'" "H2'1" sing N N 108 C66 "C2'" "H2'2" sing N N 109 C66 "N1'" "H1'1" sing N N 110 C66 "N1'" "H1'2" sing N N 111 C66 N1 C2 sing N N 112 C66 N1 C6 sing N N 113 C66 C2 N3 sing N N 114 C66 C2 O2 doub N N 115 C66 N3 C4 doub N N 116 C66 C4 C5 sing N N 117 C66 C4 N4 sing N N 118 C66 C5 C6 doub N N 119 C66 C5 H5 sing N N 120 C66 C6 H6 sing N N 121 C66 N4 HN41 sing N N 122 C66 N4 HN42 sing N N 123 C66 CB CG sing N N 124 C66 CB HB1 sing N N 125 C66 CB HB2 sing N N 126 C66 CG CD sing N N 127 C66 CG HG1 sing N N 128 C66 CG HG2 sing N N 129 C66 CD CE sing N N 130 C66 CD HD1 sing N N 131 C66 CD HD2 sing N N 132 C66 CE NZ sing N N 133 C66 CE HE1 sing N N 134 C66 CE HE2 sing N N 135 C66 NZ HZ1 sing N N 136 C66 NZ HZ2 sing N N 137 CPN "C8'" "C7'" sing N N 138 CPN "C8'" N1 sing N N 139 CPN "C8'" "H8'1" sing N N 140 CPN "C8'" "H8'2" sing N N 141 CPN "C7'" "O7'" doub N N 142 CPN "C7'" "N4'" sing N N 143 CPN "C5'" C sing N N 144 CPN "C5'" "N4'" sing N N 145 CPN "C5'" "H5'1" sing N N 146 CPN "C5'" "H5'2" sing N N 147 CPN C O doub N N 148 CPN C OXT sing N N 149 CPN OXT HXT sing N N 150 CPN "N4'" "C3'" sing N N 151 CPN "C3'" "C2'" sing N N 152 CPN "C3'" "H3'1" sing N N 153 CPN "C3'" "H3'2" sing N N 154 CPN "C2'" N sing N N 155 CPN "C2'" "H2'1" sing N N 156 CPN "C2'" "H2'2" sing N N 157 CPN N H sing N N 158 CPN N H2 sing N N 159 CPN N H3 sing N N 160 CPN N1 C2 sing N N 161 CPN N1 C6 sing N N 162 CPN C2 N3 sing N N 163 CPN C2 O2 doub N N 164 CPN N3 C4 doub N N 165 CPN C4 C5 sing N N 166 CPN C4 N4 sing N N 167 CPN C5 C6 doub N N 168 CPN C5 H5 sing N N 169 CPN C6 H6 sing N N 170 CPN N4 HN41 sing N N 171 CPN N4 HN42 sing N N 172 DA OP3 P sing N N 173 DA OP3 HOP3 sing N N 174 DA P OP1 doub N N 175 DA P OP2 sing N N 176 DA P "O5'" sing N N 177 DA OP2 HOP2 sing N N 178 DA "O5'" "C5'" sing N N 179 DA "C5'" "C4'" sing N N 180 DA "C5'" "H5'" sing N N 181 DA "C5'" "H5''" sing N N 182 DA "C4'" "O4'" sing N N 183 DA "C4'" "C3'" sing N N 184 DA "C4'" "H4'" sing N N 185 DA "O4'" "C1'" sing N N 186 DA "C3'" "O3'" sing N N 187 DA "C3'" "C2'" sing N N 188 DA "C3'" "H3'" sing N N 189 DA "O3'" "HO3'" sing N N 190 DA "C2'" "C1'" sing N N 191 DA "C2'" "H2'" sing N N 192 DA "C2'" "H2''" sing N N 193 DA "C1'" N9 sing N N 194 DA "C1'" "H1'" sing N N 195 DA N9 C8 sing Y N 196 DA N9 C4 sing Y N 197 DA C8 N7 doub Y N 198 DA C8 H8 sing N N 199 DA N7 C5 sing Y N 200 DA C5 C6 sing Y N 201 DA C5 C4 doub Y N 202 DA C6 N6 sing N N 203 DA C6 N1 doub Y N 204 DA N6 H61 sing N N 205 DA N6 H62 sing N N 206 DA N1 C2 sing Y N 207 DA C2 N3 doub Y N 208 DA C2 H2 sing N N 209 DA N3 C4 sing Y N 210 DC OP3 P sing N N 211 DC OP3 HOP3 sing N N 212 DC P OP1 doub N N 213 DC P OP2 sing N N 214 DC P "O5'" sing N N 215 DC OP2 HOP2 sing N N 216 DC "O5'" "C5'" sing N N 217 DC "C5'" "C4'" sing N N 218 DC "C5'" "H5'" sing N N 219 DC "C5'" "H5''" sing N N 220 DC "C4'" "O4'" sing N N 221 DC "C4'" "C3'" sing N N 222 DC "C4'" "H4'" sing N N 223 DC "O4'" "C1'" sing N N 224 DC "C3'" "O3'" sing N N 225 DC "C3'" "C2'" sing N N 226 DC "C3'" "H3'" sing N N 227 DC "O3'" "HO3'" sing N N 228 DC "C2'" "C1'" sing N N 229 DC "C2'" "H2'" sing N N 230 DC "C2'" "H2''" sing N N 231 DC "C1'" N1 sing N N 232 DC "C1'" "H1'" sing N N 233 DC N1 C2 sing N N 234 DC N1 C6 sing N N 235 DC C2 O2 doub N N 236 DC C2 N3 sing N N 237 DC N3 C4 doub N N 238 DC C4 N4 sing N N 239 DC C4 C5 sing N N 240 DC N4 H41 sing N N 241 DC N4 H42 sing N N 242 DC C5 C6 doub N N 243 DC C5 H5 sing N N 244 DC C6 H6 sing N N 245 DG OP3 P sing N N 246 DG OP3 HOP3 sing N N 247 DG P OP1 doub N N 248 DG P OP2 sing N N 249 DG P "O5'" sing N N 250 DG OP2 HOP2 sing N N 251 DG "O5'" "C5'" sing N N 252 DG "C5'" "C4'" sing N N 253 DG "C5'" "H5'" sing N N 254 DG "C5'" "H5''" sing N N 255 DG "C4'" "O4'" sing N N 256 DG "C4'" "C3'" sing N N 257 DG "C4'" "H4'" sing N N 258 DG "O4'" "C1'" sing N N 259 DG "C3'" "O3'" sing N N 260 DG "C3'" "C2'" sing N N 261 DG "C3'" "H3'" sing N N 262 DG "O3'" "HO3'" sing N N 263 DG "C2'" "C1'" sing N N 264 DG "C2'" "H2'" sing N N 265 DG "C2'" "H2''" sing N N 266 DG "C1'" N9 sing N N 267 DG "C1'" "H1'" sing N N 268 DG N9 C8 sing Y N 269 DG N9 C4 sing Y N 270 DG C8 N7 doub Y N 271 DG C8 H8 sing N N 272 DG N7 C5 sing Y N 273 DG C5 C6 sing N N 274 DG C5 C4 doub Y N 275 DG C6 O6 doub N N 276 DG C6 N1 sing N N 277 DG N1 C2 sing N N 278 DG N1 H1 sing N N 279 DG C2 N2 sing N N 280 DG C2 N3 doub N N 281 DG N2 H21 sing N N 282 DG N2 H22 sing N N 283 DG N3 C4 sing N N 284 DT OP3 P sing N N 285 DT OP3 HOP3 sing N N 286 DT P OP1 doub N N 287 DT P OP2 sing N N 288 DT P "O5'" sing N N 289 DT OP2 HOP2 sing N N 290 DT "O5'" "C5'" sing N N 291 DT "C5'" "C4'" sing N N 292 DT "C5'" "H5'" sing N N 293 DT "C5'" "H5''" sing N N 294 DT "C4'" "O4'" sing N N 295 DT "C4'" "C3'" sing N N 296 DT "C4'" "H4'" sing N N 297 DT "O4'" "C1'" sing N N 298 DT "C3'" "O3'" sing N N 299 DT "C3'" "C2'" sing N N 300 DT "C3'" "H3'" sing N N 301 DT "O3'" "HO3'" sing N N 302 DT "C2'" "C1'" sing N N 303 DT "C2'" "H2'" sing N N 304 DT "C2'" "H2''" sing N N 305 DT "C1'" N1 sing N N 306 DT "C1'" "H1'" sing N N 307 DT N1 C2 sing N N 308 DT N1 C6 sing N N 309 DT C2 O2 doub N N 310 DT C2 N3 sing N N 311 DT N3 C4 sing N N 312 DT N3 H3 sing N N 313 DT C4 O4 doub N N 314 DT C4 C5 sing N N 315 DT C5 C7 sing N N 316 DT C5 C6 doub N N 317 DT C7 H71 sing N N 318 DT C7 H72 sing N N 319 DT C7 H73 sing N N 320 DT C6 H6 sing N N 321 GPN "C8'" "C7'" sing N N 322 GPN "C8'" N9 sing N N 323 GPN "C8'" "H8'1" sing N N 324 GPN "C8'" "H8'2" sing N N 325 GPN "C7'" "O7'" doub N N 326 GPN "C7'" "N4'" sing N N 327 GPN "C5'" C sing N N 328 GPN "C5'" "N4'" sing N N 329 GPN "C5'" "H5'1" sing N N 330 GPN "C5'" "H5'2" sing N N 331 GPN C O doub N N 332 GPN C OXT sing N N 333 GPN OXT HXT sing N N 334 GPN "N4'" "C3'" sing N N 335 GPN "C3'" "C2'" sing N N 336 GPN "C3'" "H3'1" sing N N 337 GPN "C3'" "H3'2" sing N N 338 GPN "C2'" N sing N N 339 GPN "C2'" "H2'1" sing N N 340 GPN "C2'" "H2'2" sing N N 341 GPN N H sing N N 342 GPN N H2 sing N N 343 GPN N H3 sing N N 344 GPN N9 C8 sing Y N 345 GPN N9 C4 sing Y N 346 GPN C8 N7 doub Y N 347 GPN C8 H8 sing N N 348 GPN N7 C5 sing Y N 349 GPN C5 C6 sing N N 350 GPN C5 C4 doub Y N 351 GPN C6 O6 doub N N 352 GPN C6 N1 sing N N 353 GPN N1 C2 sing N N 354 GPN N1 HN1 sing N N 355 GPN C2 N2 sing N N 356 GPN C2 N3 doub N N 357 GPN N2 HN21 sing N N 358 GPN N2 HN22 sing N N 359 GPN N3 C4 sing N N 360 HOH O H1 sing N N 361 HOH O H2 sing N N 362 NH2 N HN1 sing N N 363 NH2 N HN2 sing N N 364 T66 "C8'" "C7'" sing N N 365 T66 "C8'" N1 sing N N 366 T66 "C8'" "H8'1" sing N N 367 T66 "C8'" "H8'2" sing N N 368 T66 "C7'" "O7'" doub N N 369 T66 "C7'" "N4'" sing N N 370 T66 "C5'" "C'" sing N N 371 T66 "C5'" "N4'" sing N N 372 T66 "C5'" CB sing N N 373 T66 "C5'" "H5'1" sing N N 374 T66 "C'" "O1'" doub N N 375 T66 "C'" OXT sing N N 376 T66 OXT HXT sing N N 377 T66 "N4'" "C3'" sing N N 378 T66 "C3'" "C2'" sing N N 379 T66 "C3'" "H3'1" sing N N 380 T66 "C3'" "H3'2" sing N N 381 T66 "C2'" "N1'" sing N N 382 T66 "C2'" "H2'1" sing N N 383 T66 "C2'" "H2'2" sing N N 384 T66 "N1'" "H1'1" sing N N 385 T66 "N1'" "H1'2" sing N N 386 T66 N1 C6 sing N N 387 T66 N1 C2 sing N N 388 T66 C6 C5 doub N N 389 T66 C6 H6 sing N N 390 T66 C2 O2 doub N N 391 T66 C2 N3 sing N N 392 T66 N3 C4 sing N N 393 T66 N3 HN3 sing N N 394 T66 C4 O4 doub N N 395 T66 C4 C5 sing N N 396 T66 C5 C5M sing N N 397 T66 C5M HM51 sing N N 398 T66 C5M HM52 sing N N 399 T66 C5M HM53 sing N N 400 T66 CB CG sing N N 401 T66 CB HB1 sing N N 402 T66 CB HB2 sing N N 403 T66 CG CD sing N N 404 T66 CG HG1 sing N N 405 T66 CG HG2 sing N N 406 T66 CD CE sing N N 407 T66 CD HD1 sing N N 408 T66 CD HD2 sing N N 409 T66 CE NZ sing N N 410 T66 CE HE1 sing N N 411 T66 CE HE2 sing N N 412 T66 NZ HZ1 sing N N 413 T66 NZ HZ2 sing N N 414 TPN "C8'" "C7'" sing N N 415 TPN "C8'" N1 sing N N 416 TPN "C8'" "H8'1" sing N N 417 TPN "C8'" "H8'2" sing N N 418 TPN "C7'" "O7'" doub N N 419 TPN "C7'" "N4'" sing N N 420 TPN "C5'" C sing N N 421 TPN "C5'" "N4'" sing N N 422 TPN "C5'" "H5'1" sing N N 423 TPN "C5'" "H5'2" sing N N 424 TPN C O doub N N 425 TPN C OXT sing N N 426 TPN OXT HXT sing N N 427 TPN "N4'" "C3'" sing N N 428 TPN "C3'" "C2'" sing N N 429 TPN "C3'" "H3'1" sing N N 430 TPN "C3'" "H3'2" sing N N 431 TPN "C2'" N sing N N 432 TPN "C2'" "H2'1" sing N N 433 TPN "C2'" "H2'2" sing N N 434 TPN N H sing N N 435 TPN N H2 sing N N 436 TPN N H3 sing N N 437 TPN N1 C6 sing N N 438 TPN N1 C2 sing N N 439 TPN C6 C5 doub N N 440 TPN C6 H6 sing N N 441 TPN C2 O2 doub N N 442 TPN C2 N3 sing N N 443 TPN N3 C4 sing N N 444 TPN N3 HN3 sing N N 445 TPN C4 O4 doub N N 446 TPN C4 C5 sing N N 447 TPN C5 C5M sing N N 448 TPN C5M HM51 sing N N 449 TPN C5M HM52 sing N N 450 TPN C5M HM53 sing N N 451 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NR8 'double helix' 1NR8 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B TPN 10 1_555 -0.103 -0.161 0.023 7.882 -12.647 0.415 1 A_DA1:TPN10_B A 1 ? B 10 ? 20 1 1 A DG 2 1_555 B CPN 9 1_555 -0.476 -0.140 0.028 -0.439 -8.591 2.390 2 A_DG2:CPN9_B A 2 ? B 9 ? 19 1 1 A DT 3 1_555 B APN 8 1_555 0.025 -0.163 -0.118 -1.331 -8.927 3.602 3 A_DT3:APN8_B A 3 ? B 8 ? 20 1 1 A DC 7 1_555 B GPN 4 1_555 0.159 -0.130 -0.439 13.205 0.152 0.570 4 A_DC7:GPN4_B A 7 ? B 4 ? 19 1 1 A DT 8 1_555 B APN 3 1_555 -0.091 -0.133 -0.214 3.338 -4.141 2.710 5 A_DT8:APN3_B A 8 ? B 3 ? 20 1 1 A DA 9 1_555 B TPN 2 1_555 0.186 -0.186 0.069 16.341 -3.207 2.835 6 A_DA9:TPN2_B A 9 ? B 2 ? 20 1 1 A DC 10 1_555 B GPN 1 1_555 0.221 -0.063 -0.136 16.486 -17.118 5.945 7 A_DC10:GPN1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B TPN 10 1_555 A DG 2 1_555 B CPN 9 1_555 -0.909 -2.134 3.512 -3.382 3.267 25.028 -5.827 1.043 3.303 7.455 7.718 25.459 1 AA_DA1DG2:CPN9TPN10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DG 2 1_555 B CPN 9 1_555 A DT 3 1_555 B APN 8 1_555 -1.213 -1.710 3.372 0.432 -0.489 27.241 -3.504 2.686 3.383 -1.039 -0.918 27.249 2 AA_DG2DT3:APN8CPN9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DC 7 1_555 B GPN 4 1_555 A DT 8 1_555 B APN 3 1_555 -0.878 -2.237 3.748 -4.582 -1.832 23.916 -4.605 0.365 4.001 -4.361 10.909 24.412 3 AA_DC7DT8:APN3GPN4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 8 1_555 B APN 3 1_555 A DA 9 1_555 B TPN 2 1_555 -0.674 -1.347 3.037 -4.052 12.964 20.213 -6.593 0.539 1.931 32.608 10.192 24.313 4 AA_DT8DA9:TPN2APN3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DA 9 1_555 B TPN 2 1_555 A DC 10 1_555 B GPN 1 1_555 0.547 -2.003 3.522 -1.368 -3.765 16.824 -3.988 -2.791 3.817 -12.636 4.593 17.291 5 AA_DA9DC10:GPN1TPN2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH #