HEADER EXTRACELLULAR MODULE 05-DEC-97 1NUB TITLE HELIX C DELETION MUTANT OF BM-40 FS-EC DOMAIN PAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASEMENT MEMBRANE PROTEIN BM-40; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FS-EC DOMAIN PAIR, FS, FOLLISTATIN-LIKE, EC, EXTRACELLULAR COMPND 5 CALCIUM-BINDING; COMPND 6 SYNONYM: OSTEONECTIN, SPARC, SECRETED PROTEIN ACIDIC AND RICH IN COMPND 7 CYSTEINE; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: HELIX C (RESIDUES 196-203) DELETION MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: 293-EBNA; SOURCE 6 ORGAN: KIDNEY; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: 293-EBNA KEYWDS EXTRACELLULAR MODULE, GLYCOPROTEIN, ANTI-ADHESIVE PROTEIN, COLLAGEN KEYWDS 2 BINDING, SITE-DIRECTED MUTAGENESIS, GLYCOSYLATED PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.HOHENESTER,T.SASAKI,R.TIMPL REVDAT 6 03-APR-24 1NUB 1 REMARK HETSYN REVDAT 5 29-JUL-20 1NUB 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1NUB 1 VERSN REVDAT 3 24-FEB-09 1NUB 1 VERSN REVDAT 2 16-FEB-99 1NUB 1 SOURCE COMPND REMARK JRNL REVDAT 2 2 1 KEYWDS MODRES REVDAT 1 30-DEC-98 1NUB 0 JRNL AUTH T.SASAKI,E.HOHENESTER,W.GOHRING,R.TIMPL JRNL TITL CRYSTAL STRUCTURE AND MAPPING BY SITE-DIRECTED MUTAGENESIS JRNL TITL 2 OF THE COLLAGEN-BINDING EPITOPE OF AN ACTIVATED FORM OF JRNL TITL 3 BM-40/SPARC/OSTEONECTIN. JRNL REF EMBO J. V. 17 1625 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9501084 JRNL DOI 10.1093/EMBOJ/17.6.1625 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.HOHENESTER,P.MAURER,R.TIMPL REMARK 1 TITL CRYSTAL STRUCTURE OF A PAIR OF FOLLISTATIN-LIKE AND EF-HAND REMARK 1 TITL 2 CALCIUM-BINDING DOMAINS IN BM-40 REMARK 1 REF EMBO J. V. 16 3778 1997 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.F.LANE,E.H.SAGE REMARK 1 TITL THE BIOLOGY OF SPARC, A PROTEIN THAT MODULATES CELL-MATRIX REMARK 1 TITL 2 INTERACTIONS REMARK 1 REF FASEB J. V. 8 163 1994 REMARK 1 REFN ISSN 0892-6638 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2374 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 263 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : INDIVIDUAL RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0 ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : 0 ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOMS NOT DEFINED BY THE ELECTRON REMARK 3 DENSITY WERE REFINED WITH ZERO OCCUPANCY REMARK 4 REMARK 4 1NUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: BM-40 FS/EC DOMAIN PAIR WITH RESIDUES 168-208 REMARK 200 REMOVED REMARK 200 REMARK 200 REMARK: ROTATION FUNCTION (15-3.5 A): 6.8 SIGMA, HIGHEST HIGHEST REMARK 200 NOISE PEAK 2.9 SIGMA. TRANSLATION FUNCTION MOLECULE 1 (6-2.8 A): REMARK 200 R-FACTOR 0.511. TRANSLATION FUNCTION MOLECULE 2 (6-2.8 A): R- REMARK 200 FACTOR 0.514. RIGID-BODY REFINEMENT OF MOLECULES 1 AND 2 (6-2.8 REMARK 200 A): R-FACTOR 0.433. 2-FOLD NCS AVERAGING PERFORMED WITH RAVE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION AT ROOM REMARK 280 TEMPERATURE. PROTEIN SOLUTION: 8-10 MG/ML IN 10 MM TRIS PH 7.5, REMARK 280 2 MM CACL2. RESERVOIR SOLUTION: 0.1 M HEPES PH 7.5, 12-14% (W/V) REMARK 280 PEG4000, 10% (V/V) 2-PROPANOL., VAPOR DIFFUSION - HANGING DROP, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.86500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.86500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 LEU A 52 REMARK 465 ALA B 50 REMARK 465 PRO B 51 REMARK 465 LEU B 52 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 192 REMARK 475 ASP A 193 REMARK 475 HIS A 194 REMARK 475 PRO A 195 REMARK 475 GLY B 192 REMARK 475 ASP B 193 REMARK 475 HIS B 194 REMARK 475 PRO B 195 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 56 CG CD OE1 NE2 REMARK 480 ASN A 57 CA CB CG OD1 ND2 REMARK 480 LYS A 61 CB CG CD CE NZ REMARK 480 GLU A 70 CG CD OE1 OE2 REMARK 480 LYS A 100 CG CD CE NZ REMARK 480 LYS A 119 CB CG CD CE NZ REMARK 480 LYS A 187 CG CD CE NZ REMARK 480 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 204 CG CD OE1 OE2 REMARK 480 LYS A 205 CB CG CD CE NZ REMARK 480 ASN A 208 CG OD1 ND2 REMARK 480 LYS A 276 CB CG CD CE NZ REMARK 480 GLN A 277 CG CD OE1 NE2 REMARK 480 LYS A 278 CG CD CE NZ REMARK 480 LYS A 282 CG CD CE NZ REMARK 480 GLN B 56 CG CD OE1 NE2 REMARK 480 ASN B 57 CA CB CG OD1 ND2 REMARK 480 LYS B 61 CB CG CD CE NZ REMARK 480 GLU B 70 CG CD OE1 OE2 REMARK 480 LYS B 100 CG CD CE NZ REMARK 480 LYS B 119 CB CG CD CE NZ REMARK 480 LYS B 187 CG CD CE NZ REMARK 480 ARG B 188 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 204 CG CD OE1 OE2 REMARK 480 LYS B 205 CB CG CD CE NZ REMARK 480 ASN B 208 CG OD1 ND2 REMARK 480 LYS B 276 CB CG CD CE NZ REMARK 480 GLN B 277 CG CD OE1 NE2 REMARK 480 LYS B 278 CG CD CE NZ REMARK 480 LYS B 282 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 4.66 83.71 REMARK 500 ASP A 98 34.22 -97.21 REMARK 500 SER A 104 168.43 177.83 REMARK 500 ASN A 168 31.69 -76.64 REMARK 500 ALA A 191 -1.38 -157.64 REMARK 500 MET A 209 2.65 -66.95 REMARK 500 ASP A 222 78.61 -67.17 REMARK 500 ASP A 257 72.68 -67.94 REMARK 500 ASN B 72 4.68 83.73 REMARK 500 ASP B 98 34.28 -97.24 REMARK 500 SER B 104 168.40 177.80 REMARK 500 ASN B 168 31.67 -76.64 REMARK 500 ALA B 191 -1.45 -157.64 REMARK 500 MET B 209 2.63 -66.91 REMARK 500 ASP B 222 78.52 -67.14 REMARK 500 ASP B 257 72.65 -67.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 160 O REMARK 620 2 GLU A 163 OE2 93.0 REMARK 620 3 PRO B 241 O 73.2 163.2 REMARK 620 4 ILE B 243 O 106.4 94.8 98.1 REMARK 620 5 GLU B 246 OE1 173.0 80.1 113.6 75.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD1 REMARK 620 2 PRO A 225 O 75.9 REMARK 620 3 ASP A 227 OD1 70.7 76.5 REMARK 620 4 TYR A 229 O 74.9 141.3 70.3 REMARK 620 5 GLU A 234 OE1 124.8 144.5 134.8 74.1 REMARK 620 6 GLU A 234 OE2 100.5 94.5 168.6 115.3 56.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 241 O REMARK 620 2 ILE A 243 O 98.1 REMARK 620 3 GLU A 246 OE1 113.6 75.0 REMARK 620 4 THR B 160 O 74.5 105.3 171.9 REMARK 620 5 GLU B 163 OE2 164.7 92.8 79.5 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD1 REMARK 620 2 ASP A 259 OD1 91.6 REMARK 620 3 ASP A 261 OD1 78.5 75.5 REMARK 620 4 TYR A 263 O 87.6 148.8 73.8 REMARK 620 5 GLU A 268 OE1 125.8 127.0 140.4 76.5 REMARK 620 6 GLU A 268 OE2 97.4 93.3 167.8 117.7 50.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 222 OD1 REMARK 620 2 PRO B 225 O 75.9 REMARK 620 3 ASP B 227 OD1 70.7 76.5 REMARK 620 4 TYR B 229 O 74.9 141.3 70.3 REMARK 620 5 GLU B 234 OE1 124.8 144.5 134.8 74.1 REMARK 620 6 GLU B 234 OE2 100.5 94.5 168.6 115.3 56.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 257 OD1 REMARK 620 2 ASP B 259 OD1 91.6 REMARK 620 3 ASP B 261 OD1 78.5 75.5 REMARK 620 4 TYR B 263 O 87.5 148.9 73.9 REMARK 620 5 GLU B 268 OE1 125.8 127.0 140.5 76.5 REMARK 620 6 GLU B 268 OE2 97.4 93.3 167.8 117.7 50.8 REMARK 620 N 1 2 3 4 5 DBREF 1NUB A 54 286 UNP P09486 SPRC_HUMAN 71 303 DBREF 1NUB B 54 286 UNP P09486 SPRC_HUMAN 71 303 SEQADV 1NUB A UNP P09486 VAL 213 DELETION SEQADV 1NUB A UNP P09486 GLU 214 DELETION SEQADV 1NUB A UNP P09486 LEU 215 DELETION SEQADV 1NUB A UNP P09486 LEU 216 DELETION SEQADV 1NUB A UNP P09486 ALA 217 DELETION SEQADV 1NUB A UNP P09486 ARG 218 DELETION SEQADV 1NUB A UNP P09486 ASP 219 DELETION SEQADV 1NUB A UNP P09486 PHE 220 DELETION SEQADV 1NUB B UNP P09486 VAL 213 DELETION SEQADV 1NUB B UNP P09486 GLU 214 DELETION SEQADV 1NUB B UNP P09486 LEU 215 DELETION SEQADV 1NUB B UNP P09486 LEU 216 DELETION SEQADV 1NUB B UNP P09486 ALA 217 DELETION SEQADV 1NUB B UNP P09486 ARG 218 DELETION SEQADV 1NUB B UNP P09486 ASP 219 DELETION SEQADV 1NUB B UNP P09486 PHE 220 DELETION SEQRES 1 A 229 ALA PRO LEU ALA PRO CYS GLN ASN HIS HIS CYS LYS HIS SEQRES 2 A 229 GLY LYS VAL CYS GLU LEU ASP GLU ASN ASN THR PRO MET SEQRES 3 A 229 CYS VAL CYS GLN ASP PRO THR SER CYS PRO ALA PRO ILE SEQRES 4 A 229 GLY GLU PHE GLU LYS VAL CYS SER ASN ASP ASN LYS THR SEQRES 5 A 229 PHE ASP SER SER CYS HIS PHE PHE ALA THR LYS CYS THR SEQRES 6 A 229 LEU GLU GLY THR LYS LYS GLY HIS LYS LEU HIS LEU ASP SEQRES 7 A 229 TYR ILE GLY PRO CYS LYS TYR ILE PRO PRO CYS LEU ASP SEQRES 8 A 229 SER GLU LEU THR GLU PHE PRO LEU ARG MET ARG ASP TRP SEQRES 9 A 229 LEU LYS ASN VAL LEU VAL THR LEU TYR GLU ARG ASP GLU SEQRES 10 A 229 ASP ASN ASN LEU LEU THR GLU LYS GLN LYS LEU ARG VAL SEQRES 11 A 229 LYS LYS ILE HIS GLU ASN GLU LYS ARG LEU GLU ALA GLY SEQRES 12 A 229 ASP HIS PRO GLU LYS ASN TYR ASN MET TYR ILE PHE PRO SEQRES 13 A 229 VAL HIS TRP GLN PHE GLY GLN LEU ASP GLN HIS PRO ILE SEQRES 14 A 229 ASP GLY TYR LEU SER HIS THR GLU LEU ALA PRO LEU ARG SEQRES 15 A 229 ALA PRO LEU ILE PRO MET GLU HIS CYS THR THR ARG PHE SEQRES 16 A 229 PHE GLU THR CYS ASP LEU ASP ASN ASP LYS TYR ILE ALA SEQRES 17 A 229 LEU ASP GLU TRP ALA GLY CYS PHE GLY ILE LYS GLN LYS SEQRES 18 A 229 ASP ILE ASP LYS ASP LEU VAL ILE SEQRES 1 B 229 ALA PRO LEU ALA PRO CYS GLN ASN HIS HIS CYS LYS HIS SEQRES 2 B 229 GLY LYS VAL CYS GLU LEU ASP GLU ASN ASN THR PRO MET SEQRES 3 B 229 CYS VAL CYS GLN ASP PRO THR SER CYS PRO ALA PRO ILE SEQRES 4 B 229 GLY GLU PHE GLU LYS VAL CYS SER ASN ASP ASN LYS THR SEQRES 5 B 229 PHE ASP SER SER CYS HIS PHE PHE ALA THR LYS CYS THR SEQRES 6 B 229 LEU GLU GLY THR LYS LYS GLY HIS LYS LEU HIS LEU ASP SEQRES 7 B 229 TYR ILE GLY PRO CYS LYS TYR ILE PRO PRO CYS LEU ASP SEQRES 8 B 229 SER GLU LEU THR GLU PHE PRO LEU ARG MET ARG ASP TRP SEQRES 9 B 229 LEU LYS ASN VAL LEU VAL THR LEU TYR GLU ARG ASP GLU SEQRES 10 B 229 ASP ASN ASN LEU LEU THR GLU LYS GLN LYS LEU ARG VAL SEQRES 11 B 229 LYS LYS ILE HIS GLU ASN GLU LYS ARG LEU GLU ALA GLY SEQRES 12 B 229 ASP HIS PRO GLU LYS ASN TYR ASN MET TYR ILE PHE PRO SEQRES 13 B 229 VAL HIS TRP GLN PHE GLY GLN LEU ASP GLN HIS PRO ILE SEQRES 14 B 229 ASP GLY TYR LEU SER HIS THR GLU LEU ALA PRO LEU ARG SEQRES 15 B 229 ALA PRO LEU ILE PRO MET GLU HIS CYS THR THR ARG PHE SEQRES 16 B 229 PHE GLU THR CYS ASP LEU ASP ASN ASP LYS TYR ILE ALA SEQRES 17 B 229 LEU ASP GLU TRP ALA GLY CYS PHE GLY ILE LYS GLN LYS SEQRES 18 B 229 ASP ILE ASP LYS ASP LEU VAL ILE MODRES 1NUB ASN A 99 ASN GLYCOSYLATION SITE MODRES 1NUB ASN B 99 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CA 6(CA 2+) HELIX 1 1 PRO A 81 SER A 83 5 3 HELIX 2 2 GLU A 90 GLU A 92 5 3 HELIX 3 3 SER A 105 THR A 114 1 10 HELIX 4 4 LYS A 119 LYS A 123 1 5 HELIX 5 5 ASP A 140 LEU A 161 1 22 HELIX 6 6 ASP A 167 ASN A 169 5 3 HELIX 7 7 GLU A 173 LEU A 189 1 17 HELIX 8 8 TYR A 207 LEU A 221 5 15 HELIX 9 9 GLU A 234 ARG A 239 5 6 HELIX 10 10 GLU A 246 CYS A 256 5 11 HELIX 11 11 LEU A 266 PHE A 273 1 8 HELIX 12 12 GLN A 277 ASP A 279 5 3 HELIX 13 13 PRO B 81 SER B 83 5 3 HELIX 14 14 GLU B 90 GLU B 92 5 3 HELIX 15 15 SER B 105 THR B 114 1 10 HELIX 16 16 LYS B 119 LYS B 123 1 5 HELIX 17 17 ASP B 140 LEU B 161 1 22 HELIX 18 18 ASP B 167 ASN B 169 5 3 HELIX 19 19 GLU B 173 LEU B 189 1 17 HELIX 20 20 TYR B 207 LEU B 221 5 15 HELIX 21 21 GLU B 234 ARG B 239 5 6 HELIX 22 22 GLU B 246 CYS B 256 5 11 HELIX 23 23 LEU B 266 PHE B 273 1 8 HELIX 24 24 GLN B 277 ASP B 279 5 3 SHEET 1 A 2 LYS A 64 LEU A 68 0 SHEET 2 A 2 PRO A 74 CYS A 78 -1 N VAL A 77 O VAL A 65 SHEET 1 B 2 VAL A 94 SER A 96 0 SHEET 2 B 2 LEU A 126 ILE A 129 -1 N TYR A 128 O CYS A 95 SHEET 1 C 2 LYS B 64 LEU B 68 0 SHEET 2 C 2 PRO B 74 CYS B 78 -1 N VAL B 77 O VAL B 65 SHEET 1 D 2 VAL B 94 SER B 96 0 SHEET 2 D 2 LEU B 126 ILE B 129 -1 N TYR B 128 O CYS B 95 SSBOND 1 CYS A 55 CYS A 66 1555 1555 2.04 SSBOND 2 CYS A 60 CYS A 76 1555 1555 2.03 SSBOND 3 CYS A 78 CYS A 113 1555 1555 2.03 SSBOND 4 CYS A 84 CYS A 106 1555 1555 2.02 SSBOND 5 CYS A 95 CYS A 132 1555 1555 2.03 SSBOND 6 CYS A 138 CYS A 248 1555 1555 2.03 SSBOND 7 CYS A 256 CYS A 272 1555 1555 2.02 SSBOND 8 CYS B 55 CYS B 66 1555 1555 2.04 SSBOND 9 CYS B 60 CYS B 76 1555 1555 2.03 SSBOND 10 CYS B 78 CYS B 113 1555 1555 2.03 SSBOND 11 CYS B 84 CYS B 106 1555 1555 2.02 SSBOND 12 CYS B 95 CYS B 132 1555 1555 2.03 SSBOND 13 CYS B 138 CYS B 248 1555 1555 2.03 SSBOND 14 CYS B 256 CYS B 272 1555 1555 2.02 LINK ND2 ASN A 99 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN B 99 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O THR A 160 CA CA B 303 4455 1555 2.25 LINK OE2 GLU A 163 CA CA B 303 4455 1555 2.00 LINK OD1 ASP A 222 CA CA A 301 1555 1555 2.73 LINK O PRO A 225 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 227 CA CA A 301 1555 1555 2.58 LINK O TYR A 229 CA CA A 301 1555 1555 2.57 LINK OE1 GLU A 234 CA CA A 301 1555 1555 2.28 LINK OE2 GLU A 234 CA CA A 301 1555 1555 2.40 LINK O PRO A 241 CA CA A 303 1555 1555 2.46 LINK O ILE A 243 CA CA A 303 1555 1555 2.39 LINK OE1 GLU A 246 CA CA A 303 1555 1555 2.39 LINK OD1 ASP A 257 CA CA A 302 1555 1555 2.47 LINK OD1 ASP A 259 CA CA A 302 1555 1555 2.68 LINK OD1 ASP A 261 CA CA A 302 1555 1555 2.48 LINK O TYR A 263 CA CA A 302 1555 1555 2.37 LINK OE1 GLU A 268 CA CA A 302 1555 1555 2.34 LINK OE2 GLU A 268 CA CA A 302 1555 1555 2.72 LINK CA CA A 303 O THR B 160 1555 4555 2.23 LINK CA CA A 303 OE2 GLU B 163 1555 4555 2.04 LINK OD1 ASP B 222 CA CA B 301 1555 1555 2.74 LINK O PRO B 225 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 227 CA CA B 301 1555 1555 2.58 LINK O TYR B 229 CA CA B 301 1555 1555 2.57 LINK OE1 GLU B 234 CA CA B 301 1555 1555 2.28 LINK OE2 GLU B 234 CA CA B 301 1555 1555 2.40 LINK O PRO B 241 CA CA B 303 1555 1555 2.46 LINK O ILE B 243 CA CA B 303 1555 1555 2.39 LINK OE1 GLU B 246 CA CA B 303 1555 1555 2.39 LINK OD1 ASP B 257 CA CA B 302 1555 1555 2.47 LINK OD1 ASP B 259 CA CA B 302 1555 1555 2.68 LINK OD1 ASP B 261 CA CA B 302 1555 1555 2.48 LINK O TYR B 263 CA CA B 302 1555 1555 2.37 LINK OE1 GLU B 268 CA CA B 302 1555 1555 2.34 LINK OE2 GLU B 268 CA CA B 302 1555 1555 2.72 CISPEP 1 HIS A 224 PRO A 225 0 -0.52 CISPEP 2 HIS B 224 PRO B 225 0 -0.54 CRYST1 51.860 88.140 153.730 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006505 0.00000 MTRIX1 1 -1.000000 -0.002800 -0.001100 0.27110 1 MTRIX2 1 -0.002900 0.997100 0.076200 0.18510 1 MTRIX3 1 0.000900 0.076200 -0.997100 -1.71080 1