data_1NVY # _entry.id 1NVY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NVY pdb_00001nvy 10.2210/pdb1nvy/pdb NDB UD0026 ? ? RCSB RCSB018265 ? ? WWPDB D_1000018265 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-25 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.value' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NVY _pdbx_database_status.recvd_initial_deposition_date 2003-02-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB UD0018 'TCGGTACCGA Holliday Junction' unspecified NDB UD0021 'TCGGTACCGA Holliday Junction' unspecified NDB UD0023 'TCGGTACCGA Holliday Junction' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cardin, C.J.' 1 'Thorpe, J.H.' 2 'Gale, B.C.' 3 'Teixeira, S.C.M.' 4 # _citation.id primary _citation.title 'Strontium, a MAD taerget for the DNA Holliday junction' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cardin, C.J.' 1 ? primary 'Thorpe, J.H.' 2 ? primary 'Gale, B.C.' 3 ? primary 'Teixeira, S.C.M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'd(TCGGTACCGA)4' 3045.005 2 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 5 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGTACCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthezied' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DA 10 10 10 DA A A . n B 1 1 DT 1 1 1 DT T B . n B 1 2 DC 2 2 2 DC C B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DC 7 7 7 DC C B . n B 1 8 DC 8 8 8 DC C B . n B 1 9 DG 9 9 9 DG G B . n B 1 10 DA 10 10 10 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR 1 103 1 SR SR A . D 2 SR 1 104 1 SR SR A . E 2 SR 1 101 1 SR SR B . F 2 SR 1 102 1 SR SR B . G 2 SR 1 105 1 SR SR B . H 3 HOH 1 489 489 HOH HOH A . H 3 HOH 2 490 490 HOH HOH A . H 3 HOH 3 491 491 HOH HOH A . H 3 HOH 4 496 496 HOH HOH A . H 3 HOH 5 497 497 HOH HOH A . H 3 HOH 6 499 499 HOH HOH A . H 3 HOH 7 500 500 HOH HOH A . H 3 HOH 8 502 502 HOH HOH A . H 3 HOH 9 503 503 HOH HOH A . H 3 HOH 10 504 504 HOH HOH A . H 3 HOH 11 505 505 HOH HOH A . H 3 HOH 12 513 513 HOH HOH A . H 3 HOH 13 514 514 HOH HOH A . H 3 HOH 14 517 517 HOH HOH A . H 3 HOH 15 520 520 HOH HOH A . H 3 HOH 16 523 523 HOH HOH A . H 3 HOH 17 525 525 HOH HOH A . H 3 HOH 18 527 527 HOH HOH A . H 3 HOH 19 530 530 HOH HOH A . H 3 HOH 20 533 533 HOH HOH A . H 3 HOH 21 538 538 HOH HOH A . H 3 HOH 22 540 540 HOH HOH A . H 3 HOH 23 543 543 HOH HOH A . H 3 HOH 24 545 545 HOH HOH A . H 3 HOH 25 546 546 HOH HOH A . H 3 HOH 26 550 550 HOH HOH A . H 3 HOH 27 551 551 HOH HOH A . H 3 HOH 28 553 553 HOH HOH A . H 3 HOH 29 559 559 HOH HOH A . H 3 HOH 30 563 563 HOH HOH A . H 3 HOH 31 564 564 HOH HOH A . H 3 HOH 32 565 565 HOH HOH A . H 3 HOH 33 569 569 HOH HOH A . H 3 HOH 34 636 636 HOH HOH A . I 3 HOH 1 466 466 HOH HOH B . I 3 HOH 2 467 467 HOH HOH B . I 3 HOH 3 468 468 HOH HOH B . I 3 HOH 4 469 469 HOH HOH B . I 3 HOH 5 470 470 HOH HOH B . I 3 HOH 6 471 471 HOH HOH B . I 3 HOH 7 472 472 HOH HOH B . I 3 HOH 8 473 473 HOH HOH B . I 3 HOH 9 474 474 HOH HOH B . I 3 HOH 10 475 475 HOH HOH B . I 3 HOH 11 476 476 HOH HOH B . I 3 HOH 12 477 477 HOH HOH B . I 3 HOH 13 478 478 HOH HOH B . I 3 HOH 14 479 479 HOH HOH B . I 3 HOH 15 480 480 HOH HOH B . I 3 HOH 16 481 481 HOH HOH B . I 3 HOH 17 482 482 HOH HOH B . I 3 HOH 18 483 483 HOH HOH B . I 3 HOH 19 484 484 HOH HOH B . I 3 HOH 20 485 485 HOH HOH B . I 3 HOH 21 486 486 HOH HOH B . I 3 HOH 22 487 487 HOH HOH B . I 3 HOH 23 488 488 HOH HOH B . I 3 HOH 24 492 492 HOH HOH B . I 3 HOH 25 493 493 HOH HOH B . I 3 HOH 26 494 494 HOH HOH B . I 3 HOH 27 495 495 HOH HOH B . I 3 HOH 28 498 498 HOH HOH B . I 3 HOH 29 501 501 HOH HOH B . I 3 HOH 30 506 506 HOH HOH B . I 3 HOH 31 508 508 HOH HOH B . I 3 HOH 32 509 509 HOH HOH B . I 3 HOH 33 510 510 HOH HOH B . I 3 HOH 34 511 511 HOH HOH B . I 3 HOH 35 512 512 HOH HOH B . I 3 HOH 36 515 515 HOH HOH B . I 3 HOH 37 516 516 HOH HOH B . I 3 HOH 38 518 518 HOH HOH B . I 3 HOH 39 519 519 HOH HOH B . I 3 HOH 40 521 521 HOH HOH B . I 3 HOH 41 522 522 HOH HOH B . I 3 HOH 42 524 524 HOH HOH B . I 3 HOH 43 526 526 HOH HOH B . I 3 HOH 44 528 528 HOH HOH B . I 3 HOH 45 529 529 HOH HOH B . I 3 HOH 46 531 531 HOH HOH B . I 3 HOH 47 532 532 HOH HOH B . I 3 HOH 48 534 534 HOH HOH B . I 3 HOH 49 535 535 HOH HOH B . I 3 HOH 50 536 536 HOH HOH B . I 3 HOH 51 537 537 HOH HOH B . I 3 HOH 52 539 539 HOH HOH B . I 3 HOH 53 541 541 HOH HOH B . I 3 HOH 54 542 542 HOH HOH B . I 3 HOH 55 544 544 HOH HOH B . I 3 HOH 56 547 547 HOH HOH B . I 3 HOH 57 548 548 HOH HOH B . I 3 HOH 58 549 549 HOH HOH B . I 3 HOH 59 554 554 HOH HOH B . I 3 HOH 60 555 555 HOH HOH B . I 3 HOH 61 556 556 HOH HOH B . I 3 HOH 62 557 557 HOH HOH B . I 3 HOH 63 558 558 HOH HOH B . I 3 HOH 64 561 561 HOH HOH B . I 3 HOH 65 562 562 HOH HOH B . I 3 HOH 66 566 566 HOH HOH B . I 3 HOH 67 567 567 HOH HOH B . I 3 HOH 68 568 568 HOH HOH B . I 3 HOH 69 571 571 HOH HOH B . I 3 HOH 70 637 637 HOH HOH B . I 3 HOH 71 638 638 HOH HOH B . I 3 HOH 72 639 639 HOH HOH B . I 3 HOH 73 640 640 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1NVY _cell.length_a 63.734 _cell.length_b 25.320 _cell.length_c 36.493 _cell.angle_alpha 90.00 _cell.angle_beta 110.11 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NVY _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1NVY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.54 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'SrCl2, MPD, NaCacodylate , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-05-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9470 1.0 2 0.7301 1.0 3 0.7667 1.0 4 0.7670 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9470, 0.7301, 0.7667, 0.7670' # _reflns.entry_id 1NVY _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 20 _reflns.number_all 16734 _reflns.number_obs 16734 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.58 _reflns.B_iso_Wilson_estimate 20.89 _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.228 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.38 _reflns_shell.pdbx_redundancy 1.88 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2509 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1NVY _refine.ls_number_reflns_obs 8443 _refine.ls_number_reflns_all 8443 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.30 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 98.92 _refine.ls_R_factor_obs 0.20962 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2069 _refine.ls_R_factor_R_free 0.26294 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 433 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 17.039 _refine.aniso_B[1][1] -1.26 _refine.aniso_B[2][2] 1.15 _refine.aniso_B[3][3] -0.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.41 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.100 _refine.overall_SU_ML 0.070 _refine.overall_SU_B 1.973 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 516 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 34.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 452 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 192 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.442 3.000 ? 694 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.707 3.000 ? 484 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 60 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.022 0.020 ? 210 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 4 'X-RAY DIFFRACTION' ? r_nbd_refined 0.130 0.200 ? 56 'X-RAY DIFFRACTION' ? r_nbd_other 0.228 0.200 ? 201 'X-RAY DIFFRACTION' ? r_nbtor_other 0.102 0.200 ? 108 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.163 0.200 ? 52 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.107 0.200 ? 14 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.086 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.351 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.076 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.883 3.000 ? 452 'X-RAY DIFFRACTION' ? r_scangle_it 3.807 4.500 ? 694 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.042 2.000 ? 452 'X-RAY DIFFRACTION' ? r_sphericity_free 6.942 2.000 ? 112 'X-RAY DIFFRACTION' ? r_sphericity_bonded 5.738 2.000 ? 404 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.581 _refine_ls_shell.number_reflns_R_work 1205 _refine_ls_shell.R_factor_R_work 0.262 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1NVY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NVY _struct.title 'Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NVY _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Holliday Junction, Strontium, Sr2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1NVY _struct_ref.pdbx_db_accession 1NVY _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NVY A 1 ? 10 ? 1NVY 1 ? 10 ? 1 10 2 1 1NVY B 1 ? 10 ? 1NVY 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 51.1868456492 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.2681771721 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 103 A HOH 489 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 103 A HOH 490 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc3 metalc ? ? C SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 103 A HOH 491 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc4 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 103 B HOH 488 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc5 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 103 B HOH 492 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc6 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 103 B HOH 493 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc7 metalc ? ? C SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 103 B HOH 638 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc8 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 104 A HOH 496 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc9 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 104 A HOH 497 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc10 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 104 A HOH 499 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc11 metalc ? ? D SR . SR ? ? ? 1_555 H HOH . O ? ? A SR 104 A HOH 500 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc12 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 104 B HOH 494 1_555 ? ? ? ? ? ? ? 2.728 ? ? metalc13 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 104 B HOH 495 1_555 ? ? ? ? ? ? ? 2.508 ? ? metalc14 metalc ? ? D SR . SR ? ? ? 1_555 I HOH . O ? ? A SR 104 B HOH 498 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc15 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 472 1_555 ? ? ? ? ? ? ? 2.496 ? ? metalc16 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 473 1_555 ? ? ? ? ? ? ? 2.553 ? ? metalc17 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 474 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc18 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 475 1_555 ? ? ? ? ? ? ? 2.673 ? ? metalc19 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 476 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc20 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 477 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc21 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 478 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc22 metalc ? ? E SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 101 B HOH 479 1_555 ? ? ? ? ? ? ? 2.693 ? ? metalc23 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 480 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc24 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 481 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc25 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 482 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc26 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 483 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc27 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 484 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc28 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 485 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc29 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 486 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc30 metalc ? ? F SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 102 B HOH 487 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc31 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 466 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc32 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 467 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc33 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 468 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc34 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 469 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc35 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 470 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc36 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 471 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc37 metalc ? ? G SR . SR ? ? ? 1_555 I HOH . O ? ? B SR 105 B HOH 639 1_555 ? ? ? ? ? ? ? 2.427 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? H HOH . ? A HOH 490 ? 1_555 76.3 ? 2 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? H HOH . ? A HOH 491 ? 1_555 81.7 ? 3 O ? H HOH . ? A HOH 490 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? H HOH . ? A HOH 491 ? 1_555 78.1 ? 4 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 488 ? 1_555 127.5 ? 5 O ? H HOH . ? A HOH 490 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 488 ? 1_555 136.1 ? 6 O ? H HOH . ? A HOH 491 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 488 ? 1_555 71.4 ? 7 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 492 ? 1_555 148.2 ? 8 O ? H HOH . ? A HOH 490 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 492 ? 1_555 73.7 ? 9 O ? H HOH . ? A HOH 491 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 492 ? 1_555 102.0 ? 10 O ? I HOH . ? B HOH 488 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 492 ? 1_555 82.5 ? 11 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 493 ? 1_555 113.7 ? 12 O ? H HOH . ? A HOH 490 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 493 ? 1_555 131.4 ? 13 O ? H HOH . ? A HOH 491 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 493 ? 1_555 148.0 ? 14 O ? I HOH . ? B HOH 488 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 493 ? 1_555 77.3 ? 15 O ? I HOH . ? B HOH 492 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 493 ? 1_555 79.7 ? 16 O ? H HOH . ? A HOH 489 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 87.7 ? 17 O ? H HOH . ? A HOH 490 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 67.7 ? 18 O ? H HOH . ? A HOH 491 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 145.7 ? 19 O ? I HOH . ? B HOH 488 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 137.4 ? 20 O ? I HOH . ? B HOH 492 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 71.4 ? 21 O ? I HOH . ? B HOH 493 ? 1_555 SR ? C SR . ? A SR 103 ? 1_555 O ? I HOH . ? B HOH 638 ? 1_555 65.6 ? 22 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 497 ? 1_555 137.6 ? 23 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 499 ? 1_555 67.3 ? 24 O ? H HOH . ? A HOH 497 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 499 ? 1_555 70.4 ? 25 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 500 ? 1_555 63.1 ? 26 O ? H HOH . ? A HOH 497 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 500 ? 1_555 148.5 ? 27 O ? H HOH . ? A HOH 499 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? H HOH . ? A HOH 500 ? 1_555 120.7 ? 28 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 494 ? 1_555 118.0 ? 29 O ? H HOH . ? A HOH 497 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 494 ? 1_555 91.6 ? 30 O ? H HOH . ? A HOH 499 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 494 ? 1_555 136.9 ? 31 O ? H HOH . ? A HOH 500 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 494 ? 1_555 95.3 ? 32 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 495 ? 1_555 133.7 ? 33 O ? H HOH . ? A HOH 497 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 495 ? 1_555 82.0 ? 34 O ? H HOH . ? A HOH 499 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 495 ? 1_555 138.3 ? 35 O ? H HOH . ? A HOH 500 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 495 ? 1_555 71.2 ? 36 O ? I HOH . ? B HOH 494 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 495 ? 1_555 72.1 ? 37 O ? H HOH . ? A HOH 496 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 73.3 ? 38 O ? H HOH . ? A HOH 497 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 93.0 ? 39 O ? H HOH . ? A HOH 499 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 73.8 ? 40 O ? H HOH . ? A HOH 500 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 118.1 ? 41 O ? I HOH . ? B HOH 494 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 68.4 ? 42 O ? I HOH . ? B HOH 495 ? 1_555 SR ? D SR . ? A SR 104 ? 1_555 O ? I HOH . ? B HOH 498 ? 1_555 140.0 ? 43 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 473 ? 1_555 78.1 ? 44 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 474 ? 1_555 78.9 ? 45 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 474 ? 1_555 70.0 ? 46 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 475 ? 1_555 142.1 ? 47 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 475 ? 1_555 73.9 ? 48 O ? I HOH . ? B HOH 474 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 475 ? 1_555 67.8 ? 49 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 476 ? 1_555 85.4 ? 50 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 476 ? 1_555 146.2 ? 51 O ? I HOH . ? B HOH 474 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 476 ? 1_555 78.1 ? 52 O ? I HOH . ? B HOH 475 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 476 ? 1_555 104.3 ? 53 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 477 ? 1_555 76.0 ? 54 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 477 ? 1_555 129.2 ? 55 O ? I HOH . ? B HOH 474 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 477 ? 1_555 142.9 ? 56 O ? I HOH . ? B HOH 475 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 477 ? 1_555 141.9 ? 57 O ? I HOH . ? B HOH 476 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 477 ? 1_555 73.1 ? 58 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 143.7 ? 59 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 135.3 ? 60 O ? I HOH . ? B HOH 474 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 121.0 ? 61 O ? I HOH . ? B HOH 475 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 72.5 ? 62 O ? I HOH . ? B HOH 476 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 71.4 ? 63 O ? I HOH . ? B HOH 477 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 478 ? 1_555 70.8 ? 64 O ? I HOH . ? B HOH 472 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 92.9 ? 65 O ? I HOH . ? B HOH 473 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 67.2 ? 66 O ? I HOH . ? B HOH 474 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 137.1 ? 67 O ? I HOH . ? B HOH 475 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 99.2 ? 68 O ? I HOH . ? B HOH 476 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 143.7 ? 69 O ? I HOH . ? B HOH 477 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 71.3 ? 70 O ? I HOH . ? B HOH 478 ? 1_555 SR ? E SR . ? B SR 101 ? 1_555 O ? I HOH . ? B HOH 479 ? 1_555 90.2 ? 71 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 481 ? 1_555 76.8 ? 72 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 482 ? 1_555 147.2 ? 73 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 482 ? 1_555 76.1 ? 74 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 483 ? 1_555 64.8 ? 75 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 483 ? 1_555 134.3 ? 76 O ? I HOH . ? B HOH 482 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 483 ? 1_555 147.3 ? 77 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 484 ? 1_555 85.8 ? 78 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 484 ? 1_555 74.6 ? 79 O ? I HOH . ? B HOH 482 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 484 ? 1_555 69.5 ? 80 O ? I HOH . ? B HOH 483 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 484 ? 1_555 123.5 ? 81 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 485 ? 1_555 136.7 ? 82 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 485 ? 1_555 136.0 ? 83 O ? I HOH . ? B HOH 482 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 485 ? 1_555 76.1 ? 84 O ? I HOH . ? B HOH 483 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 485 ? 1_555 72.3 ? 85 O ? I HOH . ? B HOH 484 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 485 ? 1_555 124.8 ? 86 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 103.5 ? 87 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 146.2 ? 88 O ? I HOH . ? B HOH 482 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 89.2 ? 89 O ? I HOH . ? B HOH 483 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 70.3 ? 90 O ? I HOH . ? B HOH 484 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 71.8 ? 91 O ? I HOH . ? B HOH 485 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 486 ? 1_555 65.8 ? 92 O ? I HOH . ? B HOH 480 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 92.4 ? 93 O ? I HOH . ? B HOH 481 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 72.5 ? 94 O ? I HOH . ? B HOH 482 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 96.8 ? 95 O ? I HOH . ? B HOH 483 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 84.8 ? 96 O ? I HOH . ? B HOH 484 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 146.6 ? 97 O ? I HOH . ? B HOH 485 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 77.6 ? 98 O ? I HOH . ? B HOH 486 ? 1_555 SR ? F SR . ? B SR 102 ? 1_555 O ? I HOH . ? B HOH 487 ? 1_555 140.4 ? 99 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 467 ? 1_555 142.4 ? 100 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 468 ? 1_555 75.6 ? 101 O ? I HOH . ? B HOH 467 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 468 ? 1_555 110.8 ? 102 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 469 ? 1_555 83.2 ? 103 O ? I HOH . ? B HOH 467 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 469 ? 1_555 68.2 ? 104 O ? I HOH . ? B HOH 468 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 469 ? 1_555 139.5 ? 105 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 470 ? 1_555 86.3 ? 106 O ? I HOH . ? B HOH 467 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 470 ? 1_555 63.3 ? 107 O ? I HOH . ? B HOH 468 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 470 ? 1_555 70.6 ? 108 O ? I HOH . ? B HOH 469 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 470 ? 1_555 74.0 ? 109 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 471 ? 1_555 100.2 ? 110 O ? I HOH . ? B HOH 467 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 471 ? 1_555 95.7 ? 111 O ? I HOH . ? B HOH 468 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 471 ? 1_555 141.8 ? 112 O ? I HOH . ? B HOH 469 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 471 ? 1_555 75.3 ? 113 O ? I HOH . ? B HOH 470 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 471 ? 1_555 147.6 ? 114 O ? I HOH . ? B HOH 466 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 74.3 ? 115 O ? I HOH . ? B HOH 467 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 142.4 ? 116 O ? I HOH . ? B HOH 468 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 81.4 ? 117 O ? I HOH . ? B HOH 469 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 125.4 ? 118 O ? I HOH . ? B HOH 470 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 149.2 ? 119 O ? I HOH . ? B HOH 471 ? 1_555 SR ? G SR . ? B SR 105 ? 1_555 O ? I HOH . ? B HOH 639 ? 1_555 61.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SR 101 ? 8 'BINDING SITE FOR RESIDUE SR B 101' AC2 Software B SR 102 ? 8 'BINDING SITE FOR RESIDUE SR B 102' AC3 Software A SR 103 ? 7 'BINDING SITE FOR RESIDUE SR A 103' AC4 Software A SR 104 ? 7 'BINDING SITE FOR RESIDUE SR A 104' AC5 Software B SR 105 ? 7 'BINDING SITE FOR RESIDUE SR B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH I . ? HOH B 472 . ? 1_555 ? 2 AC1 8 HOH I . ? HOH B 473 . ? 1_555 ? 3 AC1 8 HOH I . ? HOH B 474 . ? 1_555 ? 4 AC1 8 HOH I . ? HOH B 475 . ? 1_555 ? 5 AC1 8 HOH I . ? HOH B 476 . ? 1_555 ? 6 AC1 8 HOH I . ? HOH B 477 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH B 478 . ? 1_555 ? 8 AC1 8 HOH I . ? HOH B 479 . ? 1_555 ? 9 AC2 8 HOH I . ? HOH B 480 . ? 1_555 ? 10 AC2 8 HOH I . ? HOH B 481 . ? 1_555 ? 11 AC2 8 HOH I . ? HOH B 482 . ? 1_555 ? 12 AC2 8 HOH I . ? HOH B 483 . ? 1_555 ? 13 AC2 8 HOH I . ? HOH B 484 . ? 1_555 ? 14 AC2 8 HOH I . ? HOH B 485 . ? 1_555 ? 15 AC2 8 HOH I . ? HOH B 486 . ? 1_555 ? 16 AC2 8 HOH I . ? HOH B 487 . ? 1_555 ? 17 AC3 7 HOH H . ? HOH A 489 . ? 1_555 ? 18 AC3 7 HOH H . ? HOH A 490 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH A 491 . ? 1_555 ? 20 AC3 7 HOH I . ? HOH B 488 . ? 1_555 ? 21 AC3 7 HOH I . ? HOH B 492 . ? 1_555 ? 22 AC3 7 HOH I . ? HOH B 493 . ? 1_555 ? 23 AC3 7 HOH I . ? HOH B 638 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH A 496 . ? 1_555 ? 25 AC4 7 HOH H . ? HOH A 497 . ? 1_555 ? 26 AC4 7 HOH H . ? HOH A 499 . ? 1_555 ? 27 AC4 7 HOH H . ? HOH A 500 . ? 1_555 ? 28 AC4 7 HOH I . ? HOH B 494 . ? 1_555 ? 29 AC4 7 HOH I . ? HOH B 495 . ? 1_555 ? 30 AC4 7 HOH I . ? HOH B 498 . ? 1_555 ? 31 AC5 7 HOH I . ? HOH B 466 . ? 1_555 ? 32 AC5 7 HOH I . ? HOH B 467 . ? 1_555 ? 33 AC5 7 HOH I . ? HOH B 468 . ? 1_555 ? 34 AC5 7 HOH I . ? HOH B 469 . ? 1_555 ? 35 AC5 7 HOH I . ? HOH B 470 . ? 1_555 ? 36 AC5 7 HOH I . ? HOH B 471 . ? 1_555 ? 37 AC5 7 HOH I . ? HOH B 639 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 1 ? ? "C3'" A DT 1 ? ? 1.379 1.419 -0.040 0.006 N 2 1 C5 A DG 9 ? ? N7 A DG 9 ? ? 1.335 1.388 -0.053 0.006 N 3 1 "O3'" B DG 4 ? ? "C3'" B DG 4 ? ? 1.370 1.419 -0.049 0.006 N 4 1 "O3'" B DT 5 ? ? "C3'" B DT 5 ? ? 1.366 1.419 -0.053 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 123.93 119.90 4.03 0.60 N 2 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 123.43 119.90 3.53 0.50 N 3 1 C5 A DC 2 ? ? C6 A DC 2 ? ? N1 A DC 2 ? ? 124.29 121.00 3.29 0.50 N 4 1 "C3'" A DT 5 ? ? "C2'" A DT 5 ? ? "C1'" A DT 5 ? ? 97.39 102.40 -5.01 0.80 N 5 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.23 108.30 1.93 0.30 N 6 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 123.42 118.60 4.82 0.60 N 7 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 123.34 129.30 -5.96 0.50 N 8 1 C8 A DA 6 ? ? N9 A DA 6 ? ? C4 A DA 6 ? ? 108.52 105.80 2.72 0.40 N 9 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 102.36 105.80 -3.44 0.40 N 10 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 123.24 118.60 4.64 0.60 N 11 1 C2 A DC 7 ? ? N3 A DC 7 ? ? C4 A DC 7 ? ? 124.85 119.90 4.95 0.50 N 12 1 N3 A DC 7 ? ? C4 A DC 7 ? ? C5 A DC 7 ? ? 118.45 121.90 -3.45 0.40 N 13 1 C5 A DC 7 ? ? C6 A DC 7 ? ? N1 A DC 7 ? ? 124.21 121.00 3.21 0.50 N 14 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 103.10 108.00 -4.90 0.70 N 15 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.14 108.30 1.84 0.30 N 16 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 103.64 108.00 -4.36 0.70 N 17 1 C5 B DC 2 ? ? C4 B DC 2 ? ? N4 B DC 2 ? ? 124.70 120.20 4.50 0.70 N 18 1 C4 B DG 4 ? ? C5 B DG 4 ? ? N7 B DG 4 ? ? 113.26 110.80 2.46 0.40 N 19 1 N3 B DT 5 ? ? C4 B DT 5 ? ? O4 B DT 5 ? ? 125.28 119.90 5.38 0.60 N 20 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 110.55 108.30 2.25 0.30 N 21 1 N1 B DA 6 ? ? C6 B DA 6 ? ? N6 B DA 6 ? ? 114.21 118.60 -4.39 0.60 N 22 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 114.63 118.90 -4.27 0.60 N 23 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 101.16 108.00 -6.84 0.70 N 24 1 C6 B DC 8 ? ? N1 B DC 8 ? ? C2 B DC 8 ? ? 122.97 120.30 2.67 0.40 N 25 1 C6 B DA 10 ? ? N1 B DA 10 ? ? C2 B DA 10 ? ? 122.55 118.60 3.95 0.60 N 26 1 C5 B DA 10 ? ? C6 B DA 10 ? ? N1 B DA 10 ? ? 114.44 117.70 -3.26 0.50 N 27 1 N7 B DA 10 ? ? C8 B DA 10 ? ? N9 B DA 10 ? ? 117.26 113.80 3.46 0.50 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 546 ? H HOH . 2 1 B HOH 567 ? I HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 SR SR SR N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NVY 'double helix' 1NVY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 0.039 -0.159 0.067 -2.315 -15.164 4.906 1 A_DT1:DA10_B A 1 ? B 10 ? 20 1 1 A DC 2 1_555 B DG 9 1_555 0.213 -0.212 0.129 2.397 -2.006 -2.012 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.128 -0.243 0.139 1.668 -2.727 -2.906 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.263 -0.255 0.191 -0.833 -14.127 3.384 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.308 -0.091 0.020 -1.542 -9.334 -1.788 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.519 0.020 0.113 3.935 -13.050 -4.114 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DC 2 1_555 B DG 9 1_555 0.258 2.374 3.371 3.801 2.797 41.820 3.001 0.057 3.524 3.904 -5.304 42.073 1 AA_DT1DC2:DG9DA10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.076 2.779 3.312 0.403 -0.516 38.144 4.317 0.167 3.275 -0.790 -0.617 38.149 2 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.088 2.291 3.492 -4.649 3.815 41.470 2.768 -0.656 3.649 5.354 6.523 41.885 3 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.756 -0.397 3.300 1.208 -0.138 26.288 -0.835 1.987 3.264 -0.304 -2.655 26.315 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.650 1.309 3.238 -2.081 -1.691 42.262 1.982 0.690 3.213 -2.342 2.883 42.343 5 AA_DT5DA6:DT5DA6_BB A 5 ? B 6 ? A 6 ? B 5 ? # _atom_sites.entry_id 1NVY _atom_sites.fract_transf_matrix[1][1] 0.015690 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005744 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039494 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029181 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_