data_1O0K # _entry.id 1O0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O0K pdb_00001o0k 10.2210/pdb1o0k/pdb NDB DD0055 ? ? RCSB RCSB018423 ? ? WWPDB D_1000018423 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.value' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O0K _pdbx_database_status.recvd_initial_deposition_date 2003-02-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clark, G.R.' 1 'Pytel, P.D.' 2 'Squire, C.J.' 3 'Neidle, S.' 4 # _citation.id primary _citation.title 'Structure of the First Parallel DNA Quadruplex-drug Complex' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 125 _citation.page_first 4066 _citation.page_last 4067 _citation.year 2003 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12670225 _citation.pdbx_database_id_DOI 10.1021/ja0297988 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clark, G.R.' 1 ? primary 'Pytel, P.D.' 2 ? primary 'Squire, C.J.' 3 ? primary 'Neidle, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*GP*GP*GP*T)-3'" 1880.251 4 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn DAUNOMYCIN 527.520 3 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TGGGGT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 DAUNOMYCIN DM1 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'TGGGGT synthesized by OSWEL' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1001 1001 DT T A . n A 1 2 DG 2 1002 1002 DG G A . n A 1 3 DG 3 1003 1003 DG G A . n A 1 4 DG 4 1004 1004 DG G A . n A 1 5 DG 5 1005 1005 DG G A . n A 1 6 DT 6 1006 1006 DT T A . n B 1 1 DT 1 1007 1007 DT T B . n B 1 2 DG 2 1008 1008 DG G B . n B 1 3 DG 3 1009 1009 DG G B . n B 1 4 DG 4 1010 1010 DG G B . n B 1 5 DG 5 1011 1011 DG G B . n B 1 6 DT 6 1012 1012 DT T B . n C 1 1 DT 1 1013 1013 DT T C . n C 1 2 DG 2 1014 1014 DG G C . n C 1 3 DG 3 1015 1015 DG G C . n C 1 4 DG 4 1016 1016 DG G C . n C 1 5 DG 5 1017 1017 DG G C . n C 1 6 DT 6 1018 1018 DT T C . n D 1 1 DT 1 1019 1019 DT T D . n D 1 2 DG 2 1020 1020 DG G D . n D 1 3 DG 3 1021 1021 DG G D . n D 1 4 DG 4 1022 1022 DG G D . n D 1 5 DG 5 1023 1023 DG G D . n D 1 6 DT 6 1024 1024 DT T D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA 1 28 28 NA NA A . F 2 NA 1 30 30 NA NA A . G 3 DM1 1 25 25 DM1 DM1 B . H 3 DM1 1 27 27 DM1 DM1 C . I 2 NA 1 29 29 NA NA C . J 3 DM1 1 26 26 DM1 DM1 D . K 4 HOH 1 1112 1112 HOH HOH A . K 4 HOH 2 1113 1113 HOH HOH A . K 4 HOH 3 1114 1114 HOH HOH A . K 4 HOH 4 1116 1116 HOH HOH A . K 4 HOH 5 1118 1118 HOH HOH A . K 4 HOH 6 1119 1119 HOH HOH A . K 4 HOH 7 1130 1130 HOH HOH A . K 4 HOH 8 1135 1135 HOH HOH A . K 4 HOH 9 1136 1136 HOH HOH A . K 4 HOH 10 1139 1139 HOH HOH A . K 4 HOH 11 1141 1141 HOH HOH A . K 4 HOH 12 1146 1146 HOH HOH A . K 4 HOH 13 1151 1151 HOH HOH A . K 4 HOH 14 1154 1154 HOH HOH A . K 4 HOH 15 1157 1157 HOH HOH A . K 4 HOH 16 1161 1161 HOH HOH A . K 4 HOH 17 1162 1162 HOH HOH A . K 4 HOH 18 1169 1169 HOH HOH A . K 4 HOH 19 1172 1172 HOH HOH A . K 4 HOH 20 1174 1174 HOH HOH A . K 4 HOH 21 1178 1178 HOH HOH A . K 4 HOH 22 1186 1186 HOH HOH A . K 4 HOH 23 1190 1190 HOH HOH A . K 4 HOH 24 1197 1197 HOH HOH A . K 4 HOH 25 1201 1201 HOH HOH A . K 4 HOH 26 1203 1203 HOH HOH A . K 4 HOH 27 1210 1210 HOH HOH A . K 4 HOH 28 1211 1211 HOH HOH A . K 4 HOH 29 1212 1212 HOH HOH A . K 4 HOH 30 1214 1214 HOH HOH A . K 4 HOH 31 1221 1221 HOH HOH A . K 4 HOH 32 1234 1234 HOH HOH A . K 4 HOH 33 1236 1236 HOH HOH A . K 4 HOH 34 1243 1243 HOH HOH A . K 4 HOH 35 1245 1245 HOH HOH A . K 4 HOH 36 1253 1253 HOH HOH A . K 4 HOH 37 1254 1254 HOH HOH A . K 4 HOH 38 1255 1255 HOH HOH A . K 4 HOH 39 1257 1257 HOH HOH A . K 4 HOH 40 1259 1259 HOH HOH A . L 4 HOH 1 1103 1103 HOH HOH B . L 4 HOH 2 1107 1107 HOH HOH B . L 4 HOH 3 1111 1111 HOH HOH B . L 4 HOH 4 1122 1122 HOH HOH B . L 4 HOH 5 1124 1124 HOH HOH B . L 4 HOH 6 1131 1131 HOH HOH B . L 4 HOH 7 1137 1137 HOH HOH B . L 4 HOH 8 1145 1145 HOH HOH B . L 4 HOH 9 1147 1147 HOH HOH B . L 4 HOH 10 1170 1170 HOH HOH B . L 4 HOH 11 1177 1177 HOH HOH B . L 4 HOH 12 1180 1180 HOH HOH B . L 4 HOH 13 1182 1182 HOH HOH B . L 4 HOH 14 1184 1184 HOH HOH B . L 4 HOH 15 1185 1185 HOH HOH B . L 4 HOH 16 1187 1187 HOH HOH B . L 4 HOH 17 1189 1189 HOH HOH B . L 4 HOH 18 1195 1195 HOH HOH B . L 4 HOH 19 1199 1199 HOH HOH B . L 4 HOH 20 1204 1204 HOH HOH B . L 4 HOH 21 1207 1207 HOH HOH B . L 4 HOH 22 1209 1209 HOH HOH B . L 4 HOH 23 1217 1217 HOH HOH B . L 4 HOH 24 1219 1219 HOH HOH B . L 4 HOH 25 1223 1223 HOH HOH B . L 4 HOH 26 1224 1224 HOH HOH B . L 4 HOH 27 1225 1225 HOH HOH B . L 4 HOH 28 1229 1229 HOH HOH B . L 4 HOH 29 1231 1231 HOH HOH B . L 4 HOH 30 1233 1233 HOH HOH B . L 4 HOH 31 1235 1235 HOH HOH B . L 4 HOH 32 1248 1248 HOH HOH B . L 4 HOH 33 1250 1250 HOH HOH B . L 4 HOH 34 1251 1251 HOH HOH B . L 4 HOH 35 1258 1258 HOH HOH B . L 4 HOH 36 1262 1262 HOH HOH B . L 4 HOH 37 1264 1264 HOH HOH B . L 4 HOH 38 1265 1265 HOH HOH B . L 4 HOH 39 1267 1267 HOH HOH B . M 4 HOH 1 1106 1106 HOH HOH C . M 4 HOH 2 1110 1110 HOH HOH C . M 4 HOH 3 1115 1115 HOH HOH C . M 4 HOH 4 1121 1121 HOH HOH C . M 4 HOH 5 1125 1125 HOH HOH C . M 4 HOH 6 1126 1126 HOH HOH C . M 4 HOH 7 1127 1127 HOH HOH C . M 4 HOH 8 1128 1128 HOH HOH C . M 4 HOH 9 1129 1129 HOH HOH C . M 4 HOH 10 1132 1132 HOH HOH C . M 4 HOH 11 1133 1133 HOH HOH C . M 4 HOH 12 1134 1134 HOH HOH C . M 4 HOH 13 1138 1138 HOH HOH C . M 4 HOH 14 1142 1142 HOH HOH C . M 4 HOH 15 1143 1143 HOH HOH C . M 4 HOH 16 1144 1144 HOH HOH C . M 4 HOH 17 1149 1149 HOH HOH C . M 4 HOH 18 1150 1150 HOH HOH C . M 4 HOH 19 1152 1152 HOH HOH C . M 4 HOH 20 1155 1155 HOH HOH C . M 4 HOH 21 1156 1156 HOH HOH C . M 4 HOH 22 1159 1159 HOH HOH C . M 4 HOH 23 1160 1160 HOH HOH C . M 4 HOH 24 1164 1164 HOH HOH C . M 4 HOH 25 1166 1166 HOH HOH C . M 4 HOH 26 1167 1167 HOH HOH C . M 4 HOH 27 1173 1173 HOH HOH C . M 4 HOH 28 1175 1175 HOH HOH C . M 4 HOH 29 1179 1179 HOH HOH C . M 4 HOH 30 1183 1183 HOH HOH C . M 4 HOH 31 1191 1191 HOH HOH C . M 4 HOH 32 1194 1194 HOH HOH C . M 4 HOH 33 1196 1196 HOH HOH C . M 4 HOH 34 1198 1198 HOH HOH C . M 4 HOH 35 1200 1200 HOH HOH C . M 4 HOH 36 1202 1202 HOH HOH C . M 4 HOH 37 1205 1205 HOH HOH C . M 4 HOH 38 1213 1213 HOH HOH C . M 4 HOH 39 1215 1215 HOH HOH C . M 4 HOH 40 1218 1218 HOH HOH C . M 4 HOH 41 1222 1222 HOH HOH C . M 4 HOH 42 1227 1227 HOH HOH C . M 4 HOH 43 1228 1228 HOH HOH C . M 4 HOH 44 1237 1237 HOH HOH C . M 4 HOH 45 1239 1239 HOH HOH C . M 4 HOH 46 1240 1240 HOH HOH C . M 4 HOH 47 1246 1246 HOH HOH C . M 4 HOH 48 1263 1263 HOH HOH C . M 4 HOH 49 1266 1266 HOH HOH C . N 4 HOH 1 1101 1101 HOH HOH D . N 4 HOH 2 1102 1102 HOH HOH D . N 4 HOH 3 1104 1104 HOH HOH D . N 4 HOH 4 1105 1105 HOH HOH D . N 4 HOH 5 1108 1108 HOH HOH D . N 4 HOH 6 1109 1109 HOH HOH D . N 4 HOH 7 1117 1117 HOH HOH D . N 4 HOH 8 1120 1120 HOH HOH D . N 4 HOH 9 1123 1123 HOH HOH D . N 4 HOH 10 1140 1140 HOH HOH D . N 4 HOH 11 1148 1148 HOH HOH D . N 4 HOH 12 1153 1153 HOH HOH D . N 4 HOH 13 1158 1158 HOH HOH D . N 4 HOH 14 1163 1163 HOH HOH D . N 4 HOH 15 1165 1165 HOH HOH D . N 4 HOH 16 1168 1168 HOH HOH D . N 4 HOH 17 1171 1171 HOH HOH D . N 4 HOH 18 1176 1176 HOH HOH D . N 4 HOH 19 1181 1181 HOH HOH D . N 4 HOH 20 1188 1188 HOH HOH D . N 4 HOH 21 1192 1192 HOH HOH D . N 4 HOH 22 1193 1193 HOH HOH D . N 4 HOH 23 1206 1206 HOH HOH D . N 4 HOH 24 1208 1208 HOH HOH D . N 4 HOH 25 1216 1216 HOH HOH D . N 4 HOH 26 1220 1220 HOH HOH D . N 4 HOH 27 1226 1226 HOH HOH D . N 4 HOH 28 1230 1230 HOH HOH D . N 4 HOH 29 1232 1232 HOH HOH D . N 4 HOH 30 1238 1238 HOH HOH D . N 4 HOH 31 1241 1241 HOH HOH D . N 4 HOH 32 1242 1242 HOH HOH D . N 4 HOH 33 1244 1244 HOH HOH D . N 4 HOH 34 1247 1247 HOH HOH D . N 4 HOH 35 1249 1249 HOH HOH D . N 4 HOH 36 1252 1252 HOH HOH D . N 4 HOH 37 1256 1256 HOH HOH D . N 4 HOH 38 1260 1260 HOH HOH D . N 4 HOH 39 1261 1261 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1006 ? "C5'" ? A DT 6 "C5'" 2 1 Y 1 A DT 1006 ? "C4'" ? A DT 6 "C4'" 3 1 Y 1 A DT 1006 ? "O4'" ? A DT 6 "O4'" 4 1 Y 1 A DT 1006 ? "C3'" ? A DT 6 "C3'" 5 1 Y 1 A DT 1006 ? "O3'" ? A DT 6 "O3'" 6 1 Y 1 A DT 1006 ? "C2'" ? A DT 6 "C2'" 7 1 Y 1 A DT 1006 ? "C1'" ? A DT 6 "C1'" 8 1 Y 1 A DT 1006 ? N1 ? A DT 6 N1 9 1 Y 1 A DT 1006 ? C2 ? A DT 6 C2 10 1 Y 1 A DT 1006 ? O2 ? A DT 6 O2 11 1 Y 1 A DT 1006 ? N3 ? A DT 6 N3 12 1 Y 1 A DT 1006 ? C4 ? A DT 6 C4 13 1 Y 1 A DT 1006 ? O4 ? A DT 6 O4 14 1 Y 1 A DT 1006 ? C5 ? A DT 6 C5 15 1 Y 1 A DT 1006 ? C7 ? A DT 6 C7 16 1 Y 1 A DT 1006 ? C6 ? A DT 6 C6 17 1 Y 1 B DT 1007 ? "O5'" ? B DT 1 "O5'" 18 1 Y 1 B DT 1007 ? "C5'" ? B DT 1 "C5'" 19 1 Y 1 B DT 1007 ? "C4'" ? B DT 1 "C4'" 20 1 Y 1 B DT 1007 ? "O4'" ? B DT 1 "O4'" 21 1 Y 1 B DT 1007 ? "C3'" ? B DT 1 "C3'" 22 1 Y 1 B DT 1007 ? "C2'" ? B DT 1 "C2'" 23 1 Y 1 B DT 1007 ? "C1'" ? B DT 1 "C1'" 24 1 Y 1 B DT 1007 ? N1 ? B DT 1 N1 25 1 Y 1 B DT 1007 ? C2 ? B DT 1 C2 26 1 Y 1 B DT 1007 ? O2 ? B DT 1 O2 27 1 Y 1 B DT 1007 ? N3 ? B DT 1 N3 28 1 Y 1 B DT 1007 ? C4 ? B DT 1 C4 29 1 Y 1 B DT 1007 ? O4 ? B DT 1 O4 30 1 Y 1 B DT 1007 ? C5 ? B DT 1 C5 31 1 Y 1 B DT 1007 ? C7 ? B DT 1 C7 32 1 Y 1 B DT 1007 ? C6 ? B DT 1 C6 33 1 Y 1 B DT 1012 ? "C5'" ? B DT 6 "C5'" 34 1 Y 1 B DT 1012 ? "C4'" ? B DT 6 "C4'" 35 1 Y 1 B DT 1012 ? "O4'" ? B DT 6 "O4'" 36 1 Y 1 B DT 1012 ? "C3'" ? B DT 6 "C3'" 37 1 Y 1 B DT 1012 ? "O3'" ? B DT 6 "O3'" 38 1 Y 1 B DT 1012 ? "C2'" ? B DT 6 "C2'" 39 1 Y 1 B DT 1012 ? "C1'" ? B DT 6 "C1'" 40 1 Y 1 B DT 1012 ? N1 ? B DT 6 N1 41 1 Y 1 B DT 1012 ? C2 ? B DT 6 C2 42 1 Y 1 B DT 1012 ? O2 ? B DT 6 O2 43 1 Y 1 B DT 1012 ? N3 ? B DT 6 N3 44 1 Y 1 B DT 1012 ? C4 ? B DT 6 C4 45 1 Y 1 B DT 1012 ? O4 ? B DT 6 O4 46 1 Y 1 B DT 1012 ? C5 ? B DT 6 C5 47 1 Y 1 B DT 1012 ? C7 ? B DT 6 C7 48 1 Y 1 B DT 1012 ? C6 ? B DT 6 C6 49 1 Y 1 D DT 1019 ? "O5'" ? D DT 1 "O5'" 50 1 Y 1 D DT 1019 ? "C5'" ? D DT 1 "C5'" 51 1 Y 1 D DT 1024 ? "C5'" ? D DT 6 "C5'" 52 1 Y 1 D DT 1024 ? "C4'" ? D DT 6 "C4'" 53 1 Y 1 D DT 1024 ? "O4'" ? D DT 6 "O4'" 54 1 Y 1 D DT 1024 ? "C3'" ? D DT 6 "C3'" 55 1 Y 1 D DT 1024 ? "O3'" ? D DT 6 "O3'" 56 1 Y 1 D DT 1024 ? "C2'" ? D DT 6 "C2'" 57 1 Y 1 D DT 1024 ? "C1'" ? D DT 6 "C1'" 58 1 Y 1 D DT 1024 ? N1 ? D DT 6 N1 59 1 Y 1 D DT 1024 ? C2 ? D DT 6 C2 60 1 Y 1 D DT 1024 ? O2 ? D DT 6 O2 61 1 Y 1 D DT 1024 ? N3 ? D DT 6 N3 62 1 Y 1 D DT 1024 ? C4 ? D DT 6 C4 63 1 Y 1 D DT 1024 ? O4 ? D DT 6 O4 64 1 Y 1 D DT 1024 ? C5 ? D DT 6 C5 65 1 Y 1 D DT 1024 ? C7 ? D DT 6 C7 66 1 Y 1 D DT 1024 ? C6 ? D DT 6 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 SHELXL-97 refinement . ? 4 # _cell.entry_id 1O0K _cell.length_a 53.004 _cell.length_b 47.073 _cell.length_c 31.865 _cell.angle_alpha 90.00 _cell.angle_beta 119.80 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1O0K _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1O0K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'NaCl, Cacodylate buffer, Calcium Chloride, Spermine, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 278K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 NaCl ? ? ? 1 2 1 'Cacodylate buffer' ? ? ? 1 3 1 'Calcium Chloride' ? ? ? 1 4 1 Spermine ? ? ? 1 5 1 MPD ? ? ? 1 6 2 NaCl ? ? ? 1 7 2 'Calcium Chloride' ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 130 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-11-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type SSRL _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.08 # _reflns.entry_id 1O0K _reflns.observed_criterion_sigma_F 4.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.17 _reflns.d_resolution_low 99.0 _reflns.number_all ? _reflns.number_obs 20944 _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.67 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.17 _reflns_shell.d_res_low 1.21 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.198 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.8 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2031 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1O0K _refine.ls_d_res_high 1.17 _refine.ls_d_res_low 10.0 _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 20944 _refine.ls_number_reflns_obs 18761 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'The first G4 quadruplex from UDF062' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values SHELX _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model 'Anisotropic, isotropic' _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 434 _refine_hist.pdbx_number_atoms_ligand 117 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 718 _refine_hist.d_res_high 1.17 _refine_hist.d_res_low 10.0 # _pdbx_refine.entry_id 1O0K _pdbx_refine.R_factor_all_no_cutoff 0.163 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff 20944 _pdbx_refine.free_R_factor_no_cutoff 0.206 _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.157 _pdbx_refine.number_reflns_obs_4sig_cutoff 18761 _pdbx_refine.free_R_factor_4sig_cutoff 0.197 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 977 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1O0K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1O0K _struct.title 'Structure of the First Parallel DNA Quadruplex-drug Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O0K _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-4 Quadruplex Drug Complex, Parallel Quadruplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1O0K _struct_ref.pdbx_db_accession 1O0K _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O0K A 1 ? 6 ? 1O0K 1001 ? 1006 ? 1001 1006 2 1 1O0K B 1 ? 6 ? 1O0K 1007 ? 1012 ? 1007 1012 3 1 1O0K C 1 ? 6 ? 1O0K 1013 ? 1018 ? 1013 1018 4 1 1O0K D 1 ? 6 ? 1O0K 1019 ? 1024 ? 1019 1024 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 37.1679247319 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 27.6513461716 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E NA . NA ? ? ? 1_555 A DG 5 O6 ? ? A NA 28 A DG 1005 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc2 metalc ? ? E NA . NA ? ? ? 1_555 B DG 4 O6 ? ? A NA 28 B DG 1010 1_555 ? ? ? ? ? ? ? 2.981 ? ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 B DG 5 O6 ? ? A NA 28 B DG 1011 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 C DG 5 O6 ? ? A NA 28 C DG 1017 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 D DG 5 O6 ? ? A NA 28 D DG 1023 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 A DG 2 O6 ? ? A NA 30 A DG 1002 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc7 metalc ? ? F NA . NA ? ? ? 1_555 B DG 2 O6 ? ? A NA 30 B DG 1008 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc8 metalc ? ? F NA . NA ? ? ? 1_555 C DG 2 O6 ? ? A NA 30 C DG 1014 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc9 metalc ? ? F NA . NA ? ? ? 1_555 C DG 3 O6 ? ? A NA 30 C DG 1015 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 D DG 2 O6 ? ? A NA 30 D DG 1020 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc11 metalc ? ? F NA . NA ? ? ? 1_555 D DG 3 O6 ? ? A NA 30 D DG 1021 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc12 metalc ? ? A DG 3 O6 ? ? ? 1_555 I NA . NA ? ? A DG 1003 C NA 29 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc13 metalc ? ? A DG 4 O6 ? ? ? 1_555 I NA . NA ? ? A DG 1004 C NA 29 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc14 metalc ? ? B DG 3 O6 ? ? ? 1_555 I NA . NA ? ? B DG 1009 C NA 29 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc15 metalc ? ? B DG 4 O6 ? ? ? 1_555 I NA . NA ? ? B DG 1010 C NA 29 1_555 ? ? ? ? ? ? ? 2.633 ? ? metalc16 metalc ? ? I NA . NA ? ? ? 1_555 C DG 3 O6 ? ? C NA 29 C DG 1015 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc17 metalc ? ? I NA . NA ? ? ? 1_555 C DG 4 O6 ? ? C NA 29 C DG 1016 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc18 metalc ? ? I NA . NA ? ? ? 1_555 D DG 3 O6 ? ? C NA 29 D DG 1021 1_555 ? ? ? ? ? ? ? 2.851 ? ? metalc19 metalc ? ? I NA . NA ? ? ? 1_555 D DG 4 O6 ? ? C NA 29 D DG 1022 1_555 ? ? ? ? ? ? ? 2.621 ? ? hydrog1 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 1002 B DG 1008 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 1002 B DG 1008 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? A DG 1002 D DG 1020 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? A DG 1002 D DG 1020 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 1003 B DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 1003 B DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? A DG 1003 D DG 1021 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? A DG 1003 D DG 1021 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 1004 B DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 1004 B DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? A DG 1004 D DG 1022 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? A DG 1004 D DG 1022 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 5 N2 ? ? A DG 1005 B DG 1011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 5 N1 ? ? A DG 1005 B DG 1011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 N1 ? ? ? 1_555 D DG 5 O6 ? ? A DG 1005 D DG 1023 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DG 5 N7 ? ? A DG 1005 D DG 1023 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 2 N2 ? ? B DG 1008 C DG 1014 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 2 N1 ? ? B DG 1008 C DG 1014 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 3 N2 ? ? B DG 1009 C DG 1015 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 3 N1 ? ? B DG 1009 C DG 1015 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? B DG 1010 C DG 1016 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? B DG 1010 C DG 1016 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 5 N7 ? ? ? 1_555 C DG 5 N2 ? ? B DG 1011 C DG 1017 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DG 5 N1 ? ? B DG 1011 C DG 1017 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? C DG 1014 D DG 1020 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? C DG 1014 D DG 1020 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? C DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? C DG 1015 D DG 1021 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? C DG 1015 D DG 1021 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? C DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? C DG 1016 D DG 1022 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? C DG 1016 D DG 1022 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? C DG 5 N7 ? ? ? 1_555 D DG 5 N2 ? ? C DG 1017 D DG 1023 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DG 5 N1 ? ? C DG 1017 D DG 1023 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 5 ? A DG 1005 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? B DG 4 ? B DG 1010 ? 1_555 127.9 ? 2 O6 ? A DG 5 ? A DG 1005 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? B DG 5 ? B DG 1011 ? 1_555 81.1 ? 3 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? B DG 5 ? B DG 1011 ? 1_555 75.0 ? 4 O6 ? A DG 5 ? A DG 1005 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? C DG 5 ? C DG 1017 ? 1_555 131.8 ? 5 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? C DG 5 ? C DG 1017 ? 1_555 88.9 ? 6 O6 ? B DG 5 ? B DG 1011 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? C DG 5 ? C DG 1017 ? 1_555 80.4 ? 7 O6 ? A DG 5 ? A DG 1005 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? D DG 5 ? D DG 1023 ? 1_555 81.8 ? 8 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? D DG 5 ? D DG 1023 ? 1_555 144.9 ? 9 O6 ? B DG 5 ? B DG 1011 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? D DG 5 ? D DG 1023 ? 1_555 134.6 ? 10 O6 ? C DG 5 ? C DG 1017 ? 1_555 NA ? E NA . ? A NA 28 ? 1_555 O6 ? D DG 5 ? D DG 1023 ? 1_555 80.4 ? 11 O6 ? A DG 2 ? A DG 1002 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? B DG 2 ? B DG 1008 ? 1_555 82.9 ? 12 O6 ? A DG 2 ? A DG 1002 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? C DG 2 ? C DG 1014 ? 1_555 128.8 ? 13 O6 ? B DG 2 ? B DG 1008 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? C DG 2 ? C DG 1014 ? 1_555 80.6 ? 14 O6 ? A DG 2 ? A DG 1002 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 141.6 ? 15 O6 ? B DG 2 ? B DG 1008 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 79.7 ? 16 O6 ? C DG 2 ? C DG 1014 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 81.6 ? 17 O6 ? A DG 2 ? A DG 1002 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 2 ? D DG 1020 ? 1_555 79.3 ? 18 O6 ? B DG 2 ? B DG 1008 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 2 ? D DG 1020 ? 1_555 139.3 ? 19 O6 ? C DG 2 ? C DG 1014 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 2 ? D DG 1020 ? 1_555 82.6 ? 20 O6 ? C DG 3 ? C DG 1015 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 2 ? D DG 1020 ? 1_555 133.8 ? 21 O6 ? A DG 2 ? A DG 1002 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 130.2 ? 22 O6 ? B DG 2 ? B DG 1008 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 143.9 ? 23 O6 ? C DG 2 ? C DG 1014 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 86.0 ? 24 O6 ? C DG 3 ? C DG 1015 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 65.2 ? 25 O6 ? D DG 2 ? D DG 1020 ? 1_555 NA ? F NA . ? A NA 30 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 70.5 ? 26 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? A DG 4 ? A DG 1004 ? 1_555 74.2 ? 27 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? B DG 3 ? B DG 1009 ? 1_555 70.2 ? 28 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? B DG 3 ? B DG 1009 ? 1_555 128.9 ? 29 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? B DG 4 ? B DG 1010 ? 1_555 92.8 ? 30 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? B DG 4 ? B DG 1010 ? 1_555 72.2 ? 31 O6 ? B DG 3 ? B DG 1009 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? B DG 4 ? B DG 1010 ? 1_555 74.1 ? 32 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 107.5 ? 33 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 157.0 ? 34 O6 ? B DG 3 ? B DG 1009 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 70.8 ? 35 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 3 ? C DG 1015 ? 1_555 129.7 ? 36 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 4 ? C DG 1016 ? 1_555 157.8 ? 37 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 4 ? C DG 1016 ? 1_555 112.1 ? 38 O6 ? B DG 3 ? B DG 1009 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 4 ? C DG 1016 ? 1_555 90.8 ? 39 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 4 ? C DG 1016 ? 1_555 70.4 ? 40 O6 ? C DG 3 ? C DG 1015 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? C DG 4 ? C DG 1016 ? 1_555 75.2 ? 41 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 69.5 ? 42 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 91.8 ? 43 O6 ? B DG 3 ? B DG 1009 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 108.2 ? 44 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 159.1 ? 45 O6 ? C DG 3 ? C DG 1015 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 68.4 ? 46 O6 ? C DG 4 ? C DG 1016 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 3 ? D DG 1021 ? 1_555 129.5 ? 47 O6 ? A DG 3 ? A DG 1003 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 128.8 ? 48 O6 ? A DG 4 ? A DG 1004 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 72.2 ? 49 O6 ? B DG 3 ? B DG 1009 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 157.9 ? 50 O6 ? B DG 4 ? B DG 1010 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 111.9 ? 51 O6 ? C DG 3 ? C DG 1015 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 90.5 ? 52 O6 ? C DG 4 ? C DG 1016 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 72.5 ? 53 O6 ? D DG 3 ? D DG 1021 ? 1_555 NA ? I NA . ? C NA 29 ? 1_555 O6 ? D DG 4 ? D DG 1022 ? 1_555 74.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B DM1 25 ? 12 'BINDING SITE FOR RESIDUE DM1 B 25' AC2 Software D DM1 26 ? 12 'BINDING SITE FOR RESIDUE DM1 D 26' AC3 Software C DM1 27 ? 19 'BINDING SITE FOR RESIDUE DM1 C 27' AC4 Software A NA 28 ? 9 'BINDING SITE FOR RESIDUE NA A 28' AC5 Software C NA 29 ? 10 'BINDING SITE FOR RESIDUE NA C 29' AC6 Software A NA 30 ? 9 'BINDING SITE FOR RESIDUE NA A 30' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DT A 1 ? DT A 1001 . ? 2_656 ? 2 AC1 12 DT A 1 ? DT A 1001 . ? 1_555 ? 3 AC1 12 DG B 2 ? DG B 1008 . ? 1_555 ? 4 AC1 12 HOH L . ? HOH B 1107 . ? 1_555 ? 5 AC1 12 HOH L . ? HOH B 1124 . ? 1_555 ? 6 AC1 12 HOH L . ? HOH B 1185 . ? 1_555 ? 7 AC1 12 DM1 H . ? DM1 C 27 . ? 2_656 ? 8 AC1 12 DM1 H . ? DM1 C 27 . ? 1_555 ? 9 AC1 12 DG C 2 ? DG C 1014 . ? 1_555 ? 10 AC1 12 DG C 3 ? DG C 1015 . ? 1_555 ? 11 AC1 12 DG C 4 ? DG C 1016 . ? 1_555 ? 12 AC1 12 DM1 J . ? DM1 D 26 . ? 1_555 ? 13 AC2 12 DG A 2 ? DG A 1002 . ? 1_555 ? 14 AC2 12 DG A 3 ? DG A 1003 . ? 1_555 ? 15 AC2 12 HOH K . ? HOH A 1116 . ? 1_555 ? 16 AC2 12 DM1 G . ? DM1 B 25 . ? 1_555 ? 17 AC2 12 DM1 H . ? DM1 C 27 . ? 1_555 ? 18 AC2 12 DM1 H . ? DM1 C 27 . ? 2_656 ? 19 AC2 12 DT C 1 ? DT C 1013 . ? 2_656 ? 20 AC2 12 DT C 6 ? DT C 1018 . ? 4_545 ? 21 AC2 12 DT D 1 ? DT D 1019 . ? 2_656 ? 22 AC2 12 DG D 2 ? DG D 1020 . ? 1_555 ? 23 AC2 12 HOH N . ? HOH D 1101 . ? 1_555 ? 24 AC2 12 HOH N . ? HOH D 1140 . ? 1_555 ? 25 AC3 19 DT A 1 ? DT A 1001 . ? 2_656 ? 26 AC3 19 DM1 G . ? DM1 B 25 . ? 1_555 ? 27 AC3 19 DM1 G . ? DM1 B 25 . ? 2_656 ? 28 AC3 19 DT C 1 ? DT C 1013 . ? 1_555 ? 29 AC3 19 DG C 2 ? DG C 1014 . ? 1_555 ? 30 AC3 19 DT C 6 ? DT C 1018 . ? 4_546 ? 31 AC3 19 HOH M . ? HOH C 1106 . ? 1_555 ? 32 AC3 19 HOH M . ? HOH C 1110 . ? 1_555 ? 33 AC3 19 HOH M . ? HOH C 1126 . ? 1_555 ? 34 AC3 19 HOH M . ? HOH C 1128 . ? 1_555 ? 35 AC3 19 HOH M . ? HOH C 1129 . ? 1_555 ? 36 AC3 19 HOH M . ? HOH C 1132 . ? 4_546 ? 37 AC3 19 HOH M . ? HOH C 1134 . ? 1_555 ? 38 AC3 19 HOH M . ? HOH C 1156 . ? 4_546 ? 39 AC3 19 HOH M . ? HOH C 1159 . ? 1_555 ? 40 AC3 19 HOH M . ? HOH C 1200 . ? 1_555 ? 41 AC3 19 DM1 J . ? DM1 D 26 . ? 1_555 ? 42 AC3 19 DM1 J . ? DM1 D 26 . ? 2_656 ? 43 AC3 19 DT D 1 ? DT D 1019 . ? 2_656 ? 44 AC4 9 DG A 4 ? DG A 1004 . ? 1_555 ? 45 AC4 9 DG A 5 ? DG A 1005 . ? 1_555 ? 46 AC4 9 DG B 4 ? DG B 1010 . ? 1_555 ? 47 AC4 9 DG B 5 ? DG B 1011 . ? 1_555 ? 48 AC4 9 NA I . ? NA C 29 . ? 1_555 ? 49 AC4 9 DG C 4 ? DG C 1016 . ? 1_555 ? 50 AC4 9 DG C 5 ? DG C 1017 . ? 1_555 ? 51 AC4 9 DG D 4 ? DG D 1022 . ? 1_555 ? 52 AC4 9 DG D 5 ? DG D 1023 . ? 1_555 ? 53 AC5 10 NA E . ? NA A 28 . ? 1_555 ? 54 AC5 10 NA F . ? NA A 30 . ? 1_555 ? 55 AC5 10 DG A 3 ? DG A 1003 . ? 1_555 ? 56 AC5 10 DG A 4 ? DG A 1004 . ? 1_555 ? 57 AC5 10 DG B 3 ? DG B 1009 . ? 1_555 ? 58 AC5 10 DG B 4 ? DG B 1010 . ? 1_555 ? 59 AC5 10 DG C 3 ? DG C 1015 . ? 1_555 ? 60 AC5 10 DG C 4 ? DG C 1016 . ? 1_555 ? 61 AC5 10 DG D 3 ? DG D 1021 . ? 1_555 ? 62 AC5 10 DG D 4 ? DG D 1022 . ? 1_555 ? 63 AC6 9 DG A 2 ? DG A 1002 . ? 1_555 ? 64 AC6 9 DG A 3 ? DG A 1003 . ? 1_555 ? 65 AC6 9 DG B 2 ? DG B 1008 . ? 1_555 ? 66 AC6 9 DG B 3 ? DG B 1009 . ? 1_555 ? 67 AC6 9 NA I . ? NA C 29 . ? 1_555 ? 68 AC6 9 DG C 2 ? DG C 1014 . ? 1_555 ? 69 AC6 9 DG C 3 ? DG C 1015 . ? 1_555 ? 70 AC6 9 DG D 2 ? DG D 1020 . ? 1_555 ? 71 AC6 9 DG D 3 ? DG D 1021 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.603 1.519 0.084 0.010 N 2 1 "C2'" C DG 1014 ? ? "C1'" C DG 1014 ? ? 1.627 1.519 0.108 0.010 N 3 1 "O4'" C DG 1014 ? ? "C1'" C DG 1014 ? ? 1.321 1.418 -0.097 0.012 N 4 1 "O4'" C DG 1015 ? ? "C1'" C DG 1015 ? ? 1.492 1.420 0.072 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DT 1001 ? ? C2 A DT 1001 ? ? O2 A DT 1001 ? ? 118.37 122.30 -3.93 0.60 N 2 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 103.49 109.40 -5.91 0.80 N 3 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 118.75 108.30 10.45 0.30 N 4 1 N3 A DG 1002 ? ? C4 A DG 1002 ? ? C5 A DG 1002 ? ? 131.82 128.60 3.22 0.50 N 5 1 "O4'" A DG 1003 ? ? "C1'" A DG 1003 ? ? N9 A DG 1003 ? ? 103.43 108.00 -4.57 0.70 N 6 1 OP1 A DG 1004 ? ? P A DG 1004 ? ? OP2 A DG 1004 ? ? 104.30 119.60 -15.30 1.50 N 7 1 "O5'" A DG 1004 ? ? P A DG 1004 ? ? OP1 A DG 1004 ? ? 121.08 110.70 10.38 1.20 N 8 1 "C5'" A DG 1004 ? ? "C4'" A DG 1004 ? ? "C3'" A DG 1004 ? ? 130.33 115.70 14.63 1.20 N 9 1 "C3'" A DG 1004 ? ? "O3'" A DG 1004 ? ? P A DG 1005 ? ? 127.28 119.70 7.58 1.20 Y 10 1 "O4'" A DG 1005 ? ? "C1'" A DG 1005 ? ? N9 A DG 1005 ? ? 102.72 108.00 -5.28 0.70 N 11 1 "C3'" A DG 1005 ? ? "O3'" A DG 1005 ? ? P A DT 1006 ? ? 127.84 119.70 8.14 1.20 Y 12 1 "O4'" B DG 1008 ? ? "C1'" B DG 1008 ? ? "C2'" B DG 1008 ? ? 110.91 106.80 4.11 0.50 N 13 1 C5 B DG 1010 ? ? N7 B DG 1010 ? ? C8 B DG 1010 ? ? 107.80 104.30 3.50 0.50 N 14 1 N7 B DG 1010 ? ? C8 B DG 1010 ? ? N9 B DG 1010 ? ? 110.04 113.10 -3.06 0.50 N 15 1 "O4'" B DG 1011 ? ? "C1'" B DG 1011 ? ? N9 B DG 1011 ? ? 102.12 108.00 -5.88 0.70 N 16 1 "C1'" C DG 1014 ? ? "O4'" C DG 1014 ? ? "C4'" C DG 1014 ? ? 114.68 110.30 4.38 0.70 N 17 1 N9 C DG 1014 ? ? "C1'" C DG 1014 ? ? "C2'" C DG 1014 ? ? 100.04 112.60 -12.56 1.90 N 18 1 "O4'" C DG 1014 ? ? "C1'" C DG 1014 ? ? N9 C DG 1014 ? ? 120.02 108.30 11.72 0.30 N 19 1 "O4'" C DG 1015 ? ? "C1'" C DG 1015 ? ? N9 C DG 1015 ? ? 100.71 108.00 -7.29 0.70 N 20 1 "C3'" C DG 1016 ? ? "O3'" C DG 1016 ? ? P C DG 1017 ? ? 127.47 119.70 7.77 1.20 Y 21 1 "O5'" C DG 1017 ? ? P C DG 1017 ? ? OP2 C DG 1017 ? ? 99.53 105.70 -6.17 0.90 N 22 1 "O4'" C DG 1017 ? ? "C1'" C DG 1017 ? ? N9 C DG 1017 ? ? 98.87 108.00 -9.13 0.70 N 23 1 "O4'" C DT 1018 ? ? "C1'" C DT 1018 ? ? N1 C DT 1018 ? ? 103.25 108.00 -4.75 0.70 N 24 1 "O4'" D DT 1019 ? ? "C4'" D DT 1019 ? ? "C3'" D DT 1019 ? ? 101.53 104.50 -2.97 0.40 N 25 1 N1 D DT 1019 ? ? C2 D DT 1019 ? ? O2 D DT 1019 ? ? 128.29 123.10 5.19 0.80 N 26 1 N3 D DT 1019 ? ? C4 D DT 1019 ? ? O4 D DT 1019 ? ? 115.30 119.90 -4.60 0.60 N 27 1 "O3'" D DT 1019 ? ? P D DG 1020 ? ? OP2 D DG 1020 ? ? 118.11 110.50 7.61 1.10 Y 28 1 "O4'" D DG 1020 ? ? "C1'" D DG 1020 ? ? "C2'" D DG 1020 ? ? 110.26 106.80 3.46 0.50 N 29 1 "O4'" D DG 1023 ? ? "C1'" D DG 1023 ? ? N9 D DG 1023 ? ? 103.63 108.00 -4.37 0.70 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text STACKED # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1246 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DM1 C1 C Y N 38 DM1 C2 C Y N 39 DM1 C3 C Y N 40 DM1 C4 C Y N 41 DM1 O4 O N N 42 DM1 C5 C Y N 43 DM1 C6 C N N 44 DM1 O6 O N N 45 DM1 C7 C Y N 46 DM1 C8 C Y N 47 DM1 O8 O N N 48 DM1 C9 C Y N 49 DM1 C10 C N S 50 DM1 O10 O N N 51 DM1 C11 C N N 52 DM1 C12 C N S 53 DM1 O12 O N N 54 DM1 C13 C N N 55 DM1 O13 O N N 56 DM1 C14 C N N 57 DM1 C15 C N N 58 DM1 C16 C Y N 59 DM1 C17 C Y N 60 DM1 O17 O N N 61 DM1 C18 C Y N 62 DM1 C19 C N N 63 DM1 O19 O N N 64 DM1 C20 C Y N 65 DM1 C21 C N N 66 DM1 "C1'" C N R 67 DM1 "C2'" C N N 68 DM1 "C3'" C N S 69 DM1 "N3'" N N N 70 DM1 "C4'" C N S 71 DM1 "O4'" O N N 72 DM1 "C5'" C N S 73 DM1 "O5'" O N N 74 DM1 "C6'" C N N 75 DM1 H1 H N N 76 DM1 H2 H N N 77 DM1 H3 H N N 78 DM1 HO8 H N N 79 DM1 H10 H N N 80 DM1 H111 H N N 81 DM1 H112 H N N 82 DM1 HO12 H N N 83 DM1 H141 H N N 84 DM1 H142 H N N 85 DM1 H143 H N N 86 DM1 H151 H N N 87 DM1 H152 H N N 88 DM1 HO17 H N N 89 DM1 H211 H N N 90 DM1 H212 H N N 91 DM1 H213 H N N 92 DM1 "H1'" H N N 93 DM1 "H2'1" H N N 94 DM1 "H2'2" H N N 95 DM1 "H3'" H N N 96 DM1 "HN'1" H N N 97 DM1 "HN'2" H N N 98 DM1 "H4'" H N N 99 DM1 "HO4'" H N N 100 DM1 "H5'" H N N 101 DM1 "H6'1" H N N 102 DM1 "H6'2" H N N 103 DM1 "H6'3" H N N 104 DT OP3 O N N 105 DT P P N N 106 DT OP1 O N N 107 DT OP2 O N N 108 DT "O5'" O N N 109 DT "C5'" C N N 110 DT "C4'" C N R 111 DT "O4'" O N N 112 DT "C3'" C N S 113 DT "O3'" O N N 114 DT "C2'" C N N 115 DT "C1'" C N R 116 DT N1 N N N 117 DT C2 C N N 118 DT O2 O N N 119 DT N3 N N N 120 DT C4 C N N 121 DT O4 O N N 122 DT C5 C N N 123 DT C7 C N N 124 DT C6 C N N 125 DT HOP3 H N N 126 DT HOP2 H N N 127 DT "H5'" H N N 128 DT "H5''" H N N 129 DT "H4'" H N N 130 DT "H3'" H N N 131 DT "HO3'" H N N 132 DT "H2'" H N N 133 DT "H2''" H N N 134 DT "H1'" H N N 135 DT H3 H N N 136 DT H71 H N N 137 DT H72 H N N 138 DT H73 H N N 139 DT H6 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 NA NA NA N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DM1 C1 C2 doub Y N 40 DM1 C1 C20 sing Y N 41 DM1 C1 H1 sing N N 42 DM1 C2 C3 sing Y N 43 DM1 C2 H2 sing N N 44 DM1 C3 C4 doub Y N 45 DM1 C3 H3 sing N N 46 DM1 C4 O4 sing N N 47 DM1 C4 C5 sing Y N 48 DM1 O4 C21 sing N N 49 DM1 C5 C6 sing N N 50 DM1 C5 C20 doub Y N 51 DM1 C6 O6 doub N N 52 DM1 C6 C7 sing N N 53 DM1 C7 C8 doub Y N 54 DM1 C7 C18 sing Y N 55 DM1 C8 O8 sing N N 56 DM1 C8 C9 sing Y N 57 DM1 O8 HO8 sing N N 58 DM1 C9 C10 sing N N 59 DM1 C9 C16 doub Y N 60 DM1 C10 O10 sing N N 61 DM1 C10 C11 sing N N 62 DM1 C10 H10 sing N N 63 DM1 O10 "C1'" sing N N 64 DM1 C11 C12 sing N N 65 DM1 C11 H111 sing N N 66 DM1 C11 H112 sing N N 67 DM1 C12 O12 sing N N 68 DM1 C12 C13 sing N N 69 DM1 C12 C15 sing N N 70 DM1 O12 HO12 sing N N 71 DM1 C13 O13 doub N N 72 DM1 C13 C14 sing N N 73 DM1 C14 H141 sing N N 74 DM1 C14 H142 sing N N 75 DM1 C14 H143 sing N N 76 DM1 C15 C16 sing N N 77 DM1 C15 H151 sing N N 78 DM1 C15 H152 sing N N 79 DM1 C16 C17 sing Y N 80 DM1 C17 O17 sing N N 81 DM1 C17 C18 doub Y N 82 DM1 O17 HO17 sing N N 83 DM1 C18 C19 sing N N 84 DM1 C19 O19 doub N N 85 DM1 C19 C20 sing N N 86 DM1 C21 H211 sing N N 87 DM1 C21 H212 sing N N 88 DM1 C21 H213 sing N N 89 DM1 "C1'" "C2'" sing N N 90 DM1 "C1'" "O5'" sing N N 91 DM1 "C1'" "H1'" sing N N 92 DM1 "C2'" "C3'" sing N N 93 DM1 "C2'" "H2'1" sing N N 94 DM1 "C2'" "H2'2" sing N N 95 DM1 "C3'" "N3'" sing N N 96 DM1 "C3'" "C4'" sing N N 97 DM1 "C3'" "H3'" sing N N 98 DM1 "N3'" "HN'1" sing N N 99 DM1 "N3'" "HN'2" sing N N 100 DM1 "C4'" "O4'" sing N N 101 DM1 "C4'" "C5'" sing N N 102 DM1 "C4'" "H4'" sing N N 103 DM1 "O4'" "HO4'" sing N N 104 DM1 "C5'" "O5'" sing N N 105 DM1 "C5'" "C6'" sing N N 106 DM1 "C5'" "H5'" sing N N 107 DM1 "C6'" "H6'1" sing N N 108 DM1 "C6'" "H6'2" sing N N 109 DM1 "C6'" "H6'3" sing N N 110 DT OP3 P sing N N 111 DT OP3 HOP3 sing N N 112 DT P OP1 doub N N 113 DT P OP2 sing N N 114 DT P "O5'" sing N N 115 DT OP2 HOP2 sing N N 116 DT "O5'" "C5'" sing N N 117 DT "C5'" "C4'" sing N N 118 DT "C5'" "H5'" sing N N 119 DT "C5'" "H5''" sing N N 120 DT "C4'" "O4'" sing N N 121 DT "C4'" "C3'" sing N N 122 DT "C4'" "H4'" sing N N 123 DT "O4'" "C1'" sing N N 124 DT "C3'" "O3'" sing N N 125 DT "C3'" "C2'" sing N N 126 DT "C3'" "H3'" sing N N 127 DT "O3'" "HO3'" sing N N 128 DT "C2'" "C1'" sing N N 129 DT "C2'" "H2'" sing N N 130 DT "C2'" "H2''" sing N N 131 DT "C1'" N1 sing N N 132 DT "C1'" "H1'" sing N N 133 DT N1 C2 sing N N 134 DT N1 C6 sing N N 135 DT C2 O2 doub N N 136 DT C2 N3 sing N N 137 DT N3 C4 sing N N 138 DT N3 H3 sing N N 139 DT C4 O4 doub N N 140 DT C4 C5 sing N N 141 DT C5 C7 sing N N 142 DT C5 C6 doub N N 143 DT C7 H71 sing N N 144 DT C7 H72 sing N N 145 DT C7 H73 sing N N 146 DT C6 H6 sing N N 147 HOH O H1 sing N N 148 HOH O H2 sing N N 149 # _ndb_struct_conf_na.entry_id 1O0K _ndb_struct_conf_na.feature 'quadruple helix' # _pdbx_initial_refinement_model.accession_code 352D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'The first G4 quadruplex from UDF062' # _atom_sites.entry_id 1O0K _atom_sites.fract_transf_matrix[1][1] 0.018866 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010805 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021244 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036165 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P # loop_