data_1O1X # _entry.id 1O1X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O1X pdb_00001o1x 10.2210/pdb1o1x/pdb RCSB RCSB001701 ? ? WWPDB D_1000001701 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282947 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O1X _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-02-12 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution.' _citation.journal_abbrev Proteins _citation.journal_volume 56 _citation.page_first 171 _citation.page_last 175 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15162497 _citation.pdbx_database_id_DOI 10.1002/prot.20129 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'McMullan, D.' 3 ? primary 'von Delft, F.' 4 ? primary 'Brinen, L.S.' 5 ? primary 'Canaves, J.M.' 6 ? primary 'Dai, X.' 7 ? primary 'Deacon, A.M.' 8 ? primary 'Elsliger, M.A.' 9 ? primary 'Eshagi, S.' 10 ? primary 'Floyd, R.' 11 ? primary 'Godzik, A.' 12 ? primary 'Grittini, C.' 13 ? primary 'Grzechnik, S.K.' 14 ? primary 'Jaroszewski, L.' 15 ? primary 'Karlak, C.' 16 ? primary 'Klock, H.E.' 17 ? primary 'Koesema, E.' 18 ? primary 'Kovarik, J.S.' 19 ? primary 'Kreusch, A.' 20 ? primary 'Kuhn, P.' 21 ? primary 'Lesley, S.A.' 22 ? primary 'Levin, I.' 23 ? primary 'McPhillips, T.M.' 24 ? primary 'Miller, M.D.' 25 ? primary 'Morse, A.' 26 ? primary 'Moy, K.' 27 ? primary 'Ouyang, J.' 28 ? primary 'Page, R.' 29 ? primary 'Quijano, K.' 30 ? primary 'Robb, A.' 31 ? primary 'Spraggon, G.' 32 ? primary 'Stevens, F.' 33 ? primary 'van den Bedem, H.' 34 ? primary 'Velasquez, J.' 35 ? primary 'Vincent, J.' 36 ? primary 'Wang, X.' 37 ? primary 'West, B.' 38 ? primary 'Wolf, G.' 39 ? primary 'Hodgson, K.O.' 40 ? primary 'Wooley, J.' 41 ? primary 'Wilson, I.A.' 42 ? # _cell.entry_id 1O1X _cell.length_a 61.490 _cell.length_b 73.890 _cell.length_c 87.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O1X _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ribose-5-phosphate isomerase RpiB' 17507.496 1 5.3.1.6 ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 3 water nat water 18.015 212 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILL (OCS)GTGLG(MSE)SIAANRYRGIRAALCLFPD(MSE)ARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGGR HERRIRKIDEV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTG LGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGGRHERRIRKIDEV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282947 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 VAL n 1 14 LYS n 1 15 ILE n 1 16 ALA n 1 17 ILE n 1 18 ALA n 1 19 SER n 1 20 ASP n 1 21 HIS n 1 22 ALA n 1 23 ALA n 1 24 PHE n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 ASN n 1 33 TYR n 1 34 LEU n 1 35 LEU n 1 36 GLY n 1 37 LYS n 1 38 GLY n 1 39 ILE n 1 40 GLU n 1 41 VAL n 1 42 GLU n 1 43 ASP n 1 44 HIS n 1 45 GLY n 1 46 THR n 1 47 TYR n 1 48 SER n 1 49 GLU n 1 50 GLU n 1 51 SER n 1 52 VAL n 1 53 ASP n 1 54 TYR n 1 55 PRO n 1 56 ASP n 1 57 TYR n 1 58 ALA n 1 59 LYS n 1 60 LYS n 1 61 VAL n 1 62 VAL n 1 63 GLN n 1 64 SER n 1 65 ILE n 1 66 LEU n 1 67 SER n 1 68 ASN n 1 69 GLU n 1 70 ALA n 1 71 ASP n 1 72 PHE n 1 73 GLY n 1 74 ILE n 1 75 LEU n 1 76 LEU n 1 77 OCS n 1 78 GLY n 1 79 THR n 1 80 GLY n 1 81 LEU n 1 82 GLY n 1 83 MSE n 1 84 SER n 1 85 ILE n 1 86 ALA n 1 87 ALA n 1 88 ASN n 1 89 ARG n 1 90 TYR n 1 91 ARG n 1 92 GLY n 1 93 ILE n 1 94 ARG n 1 95 ALA n 1 96 ALA n 1 97 LEU n 1 98 CYS n 1 99 LEU n 1 100 PHE n 1 101 PRO n 1 102 ASP n 1 103 MSE n 1 104 ALA n 1 105 ARG n 1 106 LEU n 1 107 ALA n 1 108 ARG n 1 109 SER n 1 110 HIS n 1 111 ASN n 1 112 ASN n 1 113 ALA n 1 114 ASN n 1 115 ILE n 1 116 LEU n 1 117 VAL n 1 118 LEU n 1 119 PRO n 1 120 GLY n 1 121 ARG n 1 122 LEU n 1 123 ILE n 1 124 GLY n 1 125 ALA n 1 126 GLU n 1 127 LEU n 1 128 ALA n 1 129 PHE n 1 130 TRP n 1 131 ILE n 1 132 VAL n 1 133 ASP n 1 134 THR n 1 135 PHE n 1 136 LEU n 1 137 SER n 1 138 THR n 1 139 PRO n 1 140 PHE n 1 141 ASP n 1 142 GLY n 1 143 GLY n 1 144 ARG n 1 145 HIS n 1 146 GLU n 1 147 ARG n 1 148 ARG n 1 149 ILE n 1 150 ARG n 1 151 LYS n 1 152 ILE n 1 153 ASP n 1 154 GLU n 1 155 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1080 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X0G9_THEMA _struct_ref.pdbx_db_accession Q9X0G9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIAANRYRGI RAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGGRHERRIRKIDEV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O1X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 14 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0G9 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 143 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O1X MSE A 1 ? UNP Q9X0G9 ? ? 'expression tag' -11 1 1 1O1X GLY A 2 ? UNP Q9X0G9 ? ? 'expression tag' -10 2 1 1O1X SER A 3 ? UNP Q9X0G9 ? ? 'expression tag' -9 3 1 1O1X ASP A 4 ? UNP Q9X0G9 ? ? 'expression tag' -8 4 1 1O1X LYS A 5 ? UNP Q9X0G9 ? ? 'expression tag' -7 5 1 1O1X ILE A 6 ? UNP Q9X0G9 ? ? 'expression tag' -6 6 1 1O1X HIS A 7 ? UNP Q9X0G9 ? ? 'expression tag' -5 7 1 1O1X HIS A 8 ? UNP Q9X0G9 ? ? 'expression tag' -4 8 1 1O1X HIS A 9 ? UNP Q9X0G9 ? ? 'expression tag' -3 9 1 1O1X HIS A 10 ? UNP Q9X0G9 ? ? 'expression tag' -2 10 1 1O1X HIS A 11 ? UNP Q9X0G9 ? ? 'expression tag' -1 11 1 1O1X HIS A 12 ? UNP Q9X0G9 ? ? 'expression tag' 0 12 1 1O1X VAL A 13 ? UNP Q9X0G9 ? ? 'expression tag' 1 13 1 1O1X OCS A 77 ? UNP Q9X0G9 CYS 65 'modified residue' 65 14 1 1O1X MSE A 83 ? UNP Q9X0G9 MET 71 'modified residue' 71 15 1 1O1X MSE A 103 ? UNP Q9X0G9 MET 91 'modified residue' 91 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1O1X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details '40 % (+/-)-2-Methyl-2,4-Pentanediol; 0.1 M HEPES pH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-11-26 _diffrn_detector.details 'FLAT MIRROR,SINGLE CRYSTAL SI(311) BENT MONOCHROMATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97931 1.0 3 0.97892 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.91837, 0.97931, 0.97892' # _reflns.entry_id 1O1X _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.788 _reflns.d_resolution_high 1.900 _reflns.number_obs 15973 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 15.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.284 _reflns_shell.meanI_over_sigI_obs 3.400 _reflns_shell.pdbx_redundancy 2.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1O1X _refine.ls_number_reflns_obs 15168 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.26 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.118 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.117 _refine.ls_R_factor_R_free 0.138 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 803 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.974 _refine.B_iso_mean 13.98 _refine.aniso_B[1][1] 1.40000 _refine.aniso_B[2][2] -1.10000 _refine.aniso_B[3][3] -0.30000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THERE IS WEAK DIFFERENCE DENSITY AT THE N-TERMINUS, APPARENTLY INDICATING AT LEAST ONE MORE HIS- TAG RESIDUE; IT WAS NOT MODELLED BECAUSE AT FULL OCCUPANCY, IT RESULTS IN A WORSE RFREE. SEVERAL LARGE BLOBS OF DIFFERENCE DENSITY THAT COULD NOT BE UNAMBIGUOUSLY IDENTIFIED, AND HAVE BEEN MODELLED AS CLOSELY-SPACED SOLVENT INSTEAD. THESE OCCUR NEAR THE FOLLOWING:A25, A51, A60, A82, A114, A127, A133. INITIAL REFINEMENT WAS PERFORMED USING CNS. REBUILDING WAS PERFORMED USING XFIT. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R 0.086 _refine.pdbx_overall_ESU_R_Free 0.081 _refine.overall_SU_ML 0.062 _refine.overall_SU_B 4.442 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1139 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1359 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 28.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1199 'X-RAY DIFFRACTION' ? r_bond_other_d 0.006 0.020 ? 1122 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.518 1.963 ? 1622 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.934 3.000 ? 2603 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.529 5.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.571 23.448 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.572 15.000 ? 215 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.732 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.100 0.200 ? 183 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1314 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 247 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 220 'X-RAY DIFFRACTION' ? r_nbd_other 0.239 0.200 ? 1269 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 702 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.240 0.200 ? 140 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.178 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.308 0.200 ? 90 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.259 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.772 1.500 ? 724 'X-RAY DIFFRACTION' ? r_mcangle_it 1.467 2.000 ? 1167 'X-RAY DIFFRACTION' ? r_scbond_it 2.562 3.000 ? 475 'X-RAY DIFFRACTION' ? r_scangle_it 4.246 4.500 ? 455 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1030 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.19 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O1X _struct.title 'Crystal structure of a ribose 5-phosphate isomerase rpib (tm1080) from thermotoga maritima at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, isomerase' _struct_keywords.entry_id 1O1X _struct_keywords.pdbx_keywords ISOMERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 23 ? LYS A 37 ? ALA A 11 LYS A 25 1 ? 15 HELX_P HELX_P2 2 ASP A 53 ? SER A 67 ? ASP A 41 SER A 55 1 ? 15 HELX_P HELX_P3 3 GLY A 80 ? ASN A 88 ? GLY A 68 ASN A 76 1 ? 9 HELX_P HELX_P4 4 PHE A 100 ? HIS A 110 ? PHE A 88 HIS A 98 1 ? 11 HELX_P HELX_P5 5 GLY A 124 ? THR A 138 ? GLY A 112 THR A 126 1 ? 15 HELX_P HELX_P6 6 ARG A 144 ? ASP A 153 ? ARG A 132 ASP A 141 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 76 C ? ? ? 1_555 A OCS 77 N ? ? A LEU 64 A OCS 65 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A OCS 77 C ? ? ? 1_555 A GLY 78 N ? ? A OCS 65 A GLY 66 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A GLY 82 C ? ? ? 1_555 A MSE 83 N ? ? A GLY 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 83 C ? ? ? 1_555 A SER 84 N ? ? A MSE 71 A SER 72 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A ASP 102 C ? ? ? 1_555 A MSE 103 N ? ? A ASP 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 103 C ? ? ? 1_555 A ALA 104 N ? ? A MSE 91 A ALA 92 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 45 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 33 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 THR _struct_mon_prot_cis.pdbx_label_seq_id_2 46 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 THR _struct_mon_prot_cis.pdbx_auth_seq_id_2 34 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.37 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 40 ? ASP A 43 ? GLU A 28 ASP A 31 A 2 LYS A 14 ? SER A 19 ? LYS A 2 SER A 7 A 3 PHE A 72 ? OCS A 77 ? PHE A 60 OCS A 65 A 4 ILE A 115 ? PRO A 119 ? ILE A 103 PRO A 107 A 5 ALA A 95 ? LEU A 97 ? ALA A 83 LEU A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 42 ? O GLU A 30 N ILE A 15 ? N ILE A 3 A 2 3 N ALA A 16 ? N ALA A 4 O ILE A 74 ? O ILE A 62 A 3 4 N GLY A 73 ? N GLY A 61 O LEU A 116 ? O LEU A 104 A 4 5 O ILE A 115 ? O ILE A 103 N ALA A 96 ? N ALA A 84 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MPD _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE MPD A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LEU A 99 ? LEU A 87 . ? 1_555 ? 2 AC1 4 PHE A 100 ? PHE A 88 . ? 3_656 ? 3 AC1 4 PHE A 100 ? PHE A 88 . ? 1_555 ? 4 AC1 4 ILE A 123 ? ILE A 111 . ? 4_556 ? # _atom_sites.entry_id 1O1X _atom_sites.fract_transf_matrix[1][1] 0.016263 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013534 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011397 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 VAL 13 1 1 VAL VAL A . n A 1 14 LYS 14 2 2 LYS LYS A . n A 1 15 ILE 15 3 3 ILE ILE A . n A 1 16 ALA 16 4 4 ALA ALA A . n A 1 17 ILE 17 5 5 ILE ILE A . n A 1 18 ALA 18 6 6 ALA ALA A . n A 1 19 SER 19 7 7 SER SER A . n A 1 20 ASP 20 8 8 ASP ASP A . n A 1 21 HIS 21 9 9 HIS HIS A . n A 1 22 ALA 22 10 10 ALA ALA A . n A 1 23 ALA 23 11 11 ALA ALA A . n A 1 24 PHE 24 12 12 PHE PHE A . n A 1 25 GLU 25 13 13 GLU GLU A . n A 1 26 LEU 26 14 14 LEU LEU A . n A 1 27 LYS 27 15 15 LYS LYS A . n A 1 28 GLU 28 16 16 GLU GLU A . n A 1 29 LYS 29 17 17 LYS LYS A . n A 1 30 VAL 30 18 18 VAL VAL A . n A 1 31 LYS 31 19 19 LYS LYS A . n A 1 32 ASN 32 20 20 ASN ASN A . n A 1 33 TYR 33 21 21 TYR TYR A . n A 1 34 LEU 34 22 22 LEU LEU A . n A 1 35 LEU 35 23 23 LEU LEU A . n A 1 36 GLY 36 24 24 GLY GLY A . n A 1 37 LYS 37 25 25 LYS LYS A . n A 1 38 GLY 38 26 26 GLY GLY A . n A 1 39 ILE 39 27 27 ILE ILE A . n A 1 40 GLU 40 28 28 GLU GLU A . n A 1 41 VAL 41 29 29 VAL VAL A . n A 1 42 GLU 42 30 30 GLU GLU A . n A 1 43 ASP 43 31 31 ASP ASP A . n A 1 44 HIS 44 32 32 HIS HIS A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 THR 46 34 34 THR THR A . n A 1 47 TYR 47 35 35 TYR TYR A . n A 1 48 SER 48 36 36 SER SER A . n A 1 49 GLU 49 37 37 GLU GLU A . n A 1 50 GLU 50 38 38 GLU GLU A . n A 1 51 SER 51 39 39 SER SER A . n A 1 52 VAL 52 40 40 VAL VAL A . n A 1 53 ASP 53 41 41 ASP ASP A . n A 1 54 TYR 54 42 42 TYR TYR A . n A 1 55 PRO 55 43 43 PRO PRO A . n A 1 56 ASP 56 44 44 ASP ASP A . n A 1 57 TYR 57 45 45 TYR TYR A . n A 1 58 ALA 58 46 46 ALA ALA A . n A 1 59 LYS 59 47 47 LYS LYS A . n A 1 60 LYS 60 48 48 LYS LYS A . n A 1 61 VAL 61 49 49 VAL VAL A . n A 1 62 VAL 62 50 50 VAL VAL A . n A 1 63 GLN 63 51 51 GLN GLN A . n A 1 64 SER 64 52 52 SER SER A . n A 1 65 ILE 65 53 53 ILE ILE A . n A 1 66 LEU 66 54 54 LEU LEU A . n A 1 67 SER 67 55 55 SER SER A . n A 1 68 ASN 68 56 56 ASN ASN A . n A 1 69 GLU 69 57 57 GLU GLU A . n A 1 70 ALA 70 58 58 ALA ALA A . n A 1 71 ASP 71 59 59 ASP ASP A . n A 1 72 PHE 72 60 60 PHE PHE A . n A 1 73 GLY 73 61 61 GLY GLY A . n A 1 74 ILE 74 62 62 ILE ILE A . n A 1 75 LEU 75 63 63 LEU LEU A . n A 1 76 LEU 76 64 64 LEU LEU A . n A 1 77 OCS 77 65 65 OCS OCS A . n A 1 78 GLY 78 66 66 GLY GLY A . n A 1 79 THR 79 67 67 THR THR A . n A 1 80 GLY 80 68 68 GLY GLY A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 GLY 82 70 70 GLY GLY A . n A 1 83 MSE 83 71 71 MSE MSE A . n A 1 84 SER 84 72 72 SER SER A . n A 1 85 ILE 85 73 73 ILE ILE A . n A 1 86 ALA 86 74 74 ALA ALA A . n A 1 87 ALA 87 75 75 ALA ALA A . n A 1 88 ASN 88 76 76 ASN ASN A . n A 1 89 ARG 89 77 77 ARG ARG A . n A 1 90 TYR 90 78 78 TYR TYR A . n A 1 91 ARG 91 79 79 ARG ARG A . n A 1 92 GLY 92 80 80 GLY GLY A . n A 1 93 ILE 93 81 81 ILE ILE A . n A 1 94 ARG 94 82 82 ARG ARG A . n A 1 95 ALA 95 83 83 ALA ALA A . n A 1 96 ALA 96 84 84 ALA ALA A . n A 1 97 LEU 97 85 85 LEU LEU A . n A 1 98 CYS 98 86 86 CYS CYS A . n A 1 99 LEU 99 87 87 LEU LEU A . n A 1 100 PHE 100 88 88 PHE PHE A . n A 1 101 PRO 101 89 89 PRO PRO A . n A 1 102 ASP 102 90 90 ASP ASP A . n A 1 103 MSE 103 91 91 MSE MSE A . n A 1 104 ALA 104 92 92 ALA ALA A . n A 1 105 ARG 105 93 93 ARG ARG A . n A 1 106 LEU 106 94 94 LEU LEU A . n A 1 107 ALA 107 95 95 ALA ALA A . n A 1 108 ARG 108 96 96 ARG ARG A . n A 1 109 SER 109 97 97 SER SER A . n A 1 110 HIS 110 98 98 HIS HIS A . n A 1 111 ASN 111 99 99 ASN ASN A . n A 1 112 ASN 112 100 100 ASN ASN A . n A 1 113 ALA 113 101 101 ALA ALA A . n A 1 114 ASN 114 102 102 ASN ASN A . n A 1 115 ILE 115 103 103 ILE ILE A . n A 1 116 LEU 116 104 104 LEU LEU A . n A 1 117 VAL 117 105 105 VAL VAL A . n A 1 118 LEU 118 106 106 LEU LEU A . n A 1 119 PRO 119 107 107 PRO PRO A . n A 1 120 GLY 120 108 108 GLY GLY A . n A 1 121 ARG 121 109 109 ARG ARG A . n A 1 122 LEU 122 110 110 LEU LEU A . n A 1 123 ILE 123 111 111 ILE ILE A . n A 1 124 GLY 124 112 112 GLY GLY A . n A 1 125 ALA 125 113 113 ALA ALA A . n A 1 126 GLU 126 114 114 GLU GLU A . n A 1 127 LEU 127 115 115 LEU LEU A . n A 1 128 ALA 128 116 116 ALA ALA A . n A 1 129 PHE 129 117 117 PHE PHE A . n A 1 130 TRP 130 118 118 TRP TRP A . n A 1 131 ILE 131 119 119 ILE ILE A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 ASP 133 121 121 ASP ASP A . n A 1 134 THR 134 122 122 THR THR A . n A 1 135 PHE 135 123 123 PHE PHE A . n A 1 136 LEU 136 124 124 LEU LEU A . n A 1 137 SER 137 125 125 SER SER A . n A 1 138 THR 138 126 126 THR THR A . n A 1 139 PRO 139 127 127 PRO PRO A . n A 1 140 PHE 140 128 128 PHE PHE A . n A 1 141 ASP 141 129 129 ASP ASP A . n A 1 142 GLY 142 130 130 GLY GLY A . n A 1 143 GLY 143 131 131 GLY GLY A . n A 1 144 ARG 144 132 132 ARG ARG A . n A 1 145 HIS 145 133 133 HIS HIS A . n A 1 146 GLU 146 134 134 GLU GLU A . n A 1 147 ARG 147 135 135 ARG ARG A . n A 1 148 ARG 148 136 136 ARG ARG A . n A 1 149 ILE 149 137 137 ILE ILE A . n A 1 150 ARG 150 138 138 ARG ARG A . n A 1 151 LYS 151 139 139 LYS LYS A . n A 1 152 ILE 152 140 140 ILE ILE A . n A 1 153 ASP 153 141 141 ASP ASP A . n A 1 154 GLU 154 142 142 GLU GLU A . n A 1 155 VAL 155 143 143 VAL VAL A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD 1 301 301 MPD MPD A . C 3 HOH 1 302 1 HOH HOH A . C 3 HOH 2 303 2 HOH HOH A . C 3 HOH 3 304 3 HOH HOH A . C 3 HOH 4 305 4 HOH HOH A . C 3 HOH 5 306 5 HOH HOH A . C 3 HOH 6 307 6 HOH HOH A . C 3 HOH 7 308 7 HOH HOH A . C 3 HOH 8 309 8 HOH HOH A . C 3 HOH 9 310 9 HOH HOH A . C 3 HOH 10 311 10 HOH HOH A . C 3 HOH 11 312 11 HOH HOH A . C 3 HOH 12 313 12 HOH HOH A . C 3 HOH 13 314 13 HOH HOH A . C 3 HOH 14 315 14 HOH HOH A . C 3 HOH 15 316 15 HOH HOH A . C 3 HOH 16 317 16 HOH HOH A . C 3 HOH 17 318 17 HOH HOH A . C 3 HOH 18 319 18 HOH HOH A . C 3 HOH 19 320 19 HOH HOH A . C 3 HOH 20 321 20 HOH HOH A . C 3 HOH 21 322 21 HOH HOH A . C 3 HOH 22 323 22 HOH HOH A . C 3 HOH 23 324 23 HOH HOH A . C 3 HOH 24 325 24 HOH HOH A . C 3 HOH 25 326 25 HOH HOH A . C 3 HOH 26 327 26 HOH HOH A . C 3 HOH 27 328 27 HOH HOH A . C 3 HOH 28 329 28 HOH HOH A . C 3 HOH 29 330 29 HOH HOH A . C 3 HOH 30 331 30 HOH HOH A . C 3 HOH 31 332 31 HOH HOH A . C 3 HOH 32 333 32 HOH HOH A . C 3 HOH 33 334 33 HOH HOH A . C 3 HOH 34 335 34 HOH HOH A . C 3 HOH 35 336 35 HOH HOH A . C 3 HOH 36 337 36 HOH HOH A . C 3 HOH 37 338 37 HOH HOH A . C 3 HOH 38 339 38 HOH HOH A . C 3 HOH 39 340 39 HOH HOH A . C 3 HOH 40 341 40 HOH HOH A . C 3 HOH 41 342 41 HOH HOH A . C 3 HOH 42 343 42 HOH HOH A . C 3 HOH 43 344 43 HOH HOH A . C 3 HOH 44 345 44 HOH HOH A . C 3 HOH 45 346 45 HOH HOH A . C 3 HOH 46 347 46 HOH HOH A . C 3 HOH 47 348 47 HOH HOH A . C 3 HOH 48 349 49 HOH HOH A . C 3 HOH 49 350 50 HOH HOH A . C 3 HOH 50 351 51 HOH HOH A . C 3 HOH 51 352 52 HOH HOH A . C 3 HOH 52 353 53 HOH HOH A . C 3 HOH 53 354 54 HOH HOH A . C 3 HOH 54 355 56 HOH HOH A . C 3 HOH 55 356 57 HOH HOH A . C 3 HOH 56 357 58 HOH HOH A . C 3 HOH 57 358 59 HOH HOH A . C 3 HOH 58 359 60 HOH HOH A . C 3 HOH 59 360 61 HOH HOH A . C 3 HOH 60 361 62 HOH HOH A . C 3 HOH 61 362 63 HOH HOH A . C 3 HOH 62 363 64 HOH HOH A . C 3 HOH 63 364 65 HOH HOH A . C 3 HOH 64 365 66 HOH HOH A . C 3 HOH 65 366 67 HOH HOH A . C 3 HOH 66 367 68 HOH HOH A . C 3 HOH 67 368 69 HOH HOH A . C 3 HOH 68 369 70 HOH HOH A . C 3 HOH 69 370 71 HOH HOH A . C 3 HOH 70 371 72 HOH HOH A . C 3 HOH 71 372 73 HOH HOH A . C 3 HOH 72 373 74 HOH HOH A . C 3 HOH 73 374 75 HOH HOH A . C 3 HOH 74 375 77 HOH HOH A . C 3 HOH 75 376 78 HOH HOH A . C 3 HOH 76 377 79 HOH HOH A . C 3 HOH 77 378 80 HOH HOH A . C 3 HOH 78 379 81 HOH HOH A . C 3 HOH 79 380 82 HOH HOH A . C 3 HOH 80 381 83 HOH HOH A . C 3 HOH 81 382 84 HOH HOH A . C 3 HOH 82 383 85 HOH HOH A . C 3 HOH 83 384 86 HOH HOH A . C 3 HOH 84 385 89 HOH HOH A . C 3 HOH 85 386 90 HOH HOH A . C 3 HOH 86 387 91 HOH HOH A . C 3 HOH 87 388 92 HOH HOH A . C 3 HOH 88 389 94 HOH HOH A . C 3 HOH 89 390 95 HOH HOH A . C 3 HOH 90 391 97 HOH HOH A . C 3 HOH 91 392 98 HOH HOH A . C 3 HOH 92 393 100 HOH HOH A . C 3 HOH 93 394 101 HOH HOH A . C 3 HOH 94 395 102 HOH HOH A . C 3 HOH 95 396 103 HOH HOH A . C 3 HOH 96 397 104 HOH HOH A . C 3 HOH 97 398 106 HOH HOH A . C 3 HOH 98 399 107 HOH HOH A . C 3 HOH 99 400 108 HOH HOH A . C 3 HOH 100 401 109 HOH HOH A . C 3 HOH 101 402 110 HOH HOH A . C 3 HOH 102 403 111 HOH HOH A . C 3 HOH 103 404 112 HOH HOH A . C 3 HOH 104 405 113 HOH HOH A . C 3 HOH 105 406 114 HOH HOH A . C 3 HOH 106 407 115 HOH HOH A . C 3 HOH 107 408 116 HOH HOH A . C 3 HOH 108 409 117 HOH HOH A . C 3 HOH 109 410 119 HOH HOH A . C 3 HOH 110 411 120 HOH HOH A . C 3 HOH 111 412 121 HOH HOH A . C 3 HOH 112 413 122 HOH HOH A . C 3 HOH 113 414 123 HOH HOH A . C 3 HOH 114 415 124 HOH HOH A . C 3 HOH 115 416 127 HOH HOH A . C 3 HOH 116 417 128 HOH HOH A . C 3 HOH 117 418 129 HOH HOH A . C 3 HOH 118 419 130 HOH HOH A . C 3 HOH 119 420 131 HOH HOH A . C 3 HOH 120 421 132 HOH HOH A . C 3 HOH 121 422 133 HOH HOH A . C 3 HOH 122 423 134 HOH HOH A . C 3 HOH 123 424 135 HOH HOH A . C 3 HOH 124 425 136 HOH HOH A . C 3 HOH 125 426 137 HOH HOH A . C 3 HOH 126 427 138 HOH HOH A . C 3 HOH 127 428 139 HOH HOH A . C 3 HOH 128 429 140 HOH HOH A . C 3 HOH 129 430 141 HOH HOH A . C 3 HOH 130 431 142 HOH HOH A . C 3 HOH 131 432 143 HOH HOH A . C 3 HOH 132 433 147 HOH HOH A . C 3 HOH 133 434 148 HOH HOH A . C 3 HOH 134 435 149 HOH HOH A . C 3 HOH 135 436 150 HOH HOH A . C 3 HOH 136 437 151 HOH HOH A . C 3 HOH 137 438 152 HOH HOH A . C 3 HOH 138 439 153 HOH HOH A . C 3 HOH 139 440 154 HOH HOH A . C 3 HOH 140 441 155 HOH HOH A . C 3 HOH 141 442 156 HOH HOH A . C 3 HOH 142 443 157 HOH HOH A . C 3 HOH 143 444 158 HOH HOH A . C 3 HOH 144 445 159 HOH HOH A . C 3 HOH 145 446 160 HOH HOH A . C 3 HOH 146 447 161 HOH HOH A . C 3 HOH 147 448 162 HOH HOH A . C 3 HOH 148 449 163 HOH HOH A . C 3 HOH 149 450 164 HOH HOH A . C 3 HOH 150 451 165 HOH HOH A . C 3 HOH 151 452 166 HOH HOH A . C 3 HOH 152 453 167 HOH HOH A . C 3 HOH 153 454 168 HOH HOH A . C 3 HOH 154 455 169 HOH HOH A . C 3 HOH 155 456 170 HOH HOH A . C 3 HOH 156 457 171 HOH HOH A . C 3 HOH 157 458 172 HOH HOH A . C 3 HOH 158 459 173 HOH HOH A . C 3 HOH 159 460 174 HOH HOH A . C 3 HOH 160 461 175 HOH HOH A . C 3 HOH 161 462 176 HOH HOH A . C 3 HOH 162 463 181 HOH HOH A . C 3 HOH 163 464 182 HOH HOH A . C 3 HOH 164 465 184 HOH HOH A . C 3 HOH 165 466 185 HOH HOH A . C 3 HOH 166 467 186 HOH HOH A . C 3 HOH 167 468 187 HOH HOH A . C 3 HOH 168 469 188 HOH HOH A . C 3 HOH 169 470 190 HOH HOH A . C 3 HOH 170 471 191 HOH HOH A . C 3 HOH 171 472 192 HOH HOH A . C 3 HOH 172 473 194 HOH HOH A . C 3 HOH 173 474 195 HOH HOH A . C 3 HOH 174 475 196 HOH HOH A . C 3 HOH 175 476 197 HOH HOH A . C 3 HOH 176 477 198 HOH HOH A . C 3 HOH 177 478 199 HOH HOH A . C 3 HOH 178 479 200 HOH HOH A . C 3 HOH 179 480 201 HOH HOH A . C 3 HOH 180 481 202 HOH HOH A . C 3 HOH 181 482 203 HOH HOH A . C 3 HOH 182 483 204 HOH HOH A . C 3 HOH 183 484 205 HOH HOH A . C 3 HOH 184 485 206 HOH HOH A . C 3 HOH 185 486 207 HOH HOH A . C 3 HOH 186 487 208 HOH HOH A . C 3 HOH 187 488 209 HOH HOH A . C 3 HOH 188 489 210 HOH HOH A . C 3 HOH 189 490 211 HOH HOH A . C 3 HOH 190 491 212 HOH HOH A . C 3 HOH 191 492 213 HOH HOH A . C 3 HOH 192 493 214 HOH HOH A . C 3 HOH 193 494 215 HOH HOH A . C 3 HOH 194 495 216 HOH HOH A . C 3 HOH 195 496 217 HOH HOH A . C 3 HOH 196 497 218 HOH HOH A . C 3 HOH 197 498 219 HOH HOH A . C 3 HOH 198 499 220 HOH HOH A . C 3 HOH 199 500 221 HOH HOH A . C 3 HOH 200 501 222 HOH HOH A . C 3 HOH 201 502 223 HOH HOH A . C 3 HOH 202 503 224 HOH HOH A . C 3 HOH 203 504 225 HOH HOH A . C 3 HOH 204 505 226 HOH HOH A . C 3 HOH 205 506 227 HOH HOH A . C 3 HOH 206 507 229 HOH HOH A . C 3 HOH 207 508 230 HOH HOH A . C 3 HOH 208 509 232 HOH HOH A . C 3 HOH 209 510 233 HOH HOH A . C 3 HOH 210 511 234 HOH HOH A . C 3 HOH 211 512 235 HOH HOH A . C 3 HOH 212 513 236 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OCS 77 A OCS 65 ? CYS 'CYSTEINESULFONIC ACID' 2 A MSE 83 A MSE 71 ? MET SELENOMETHIONINE 3 A MSE 103 A MSE 91 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10130 ? 1 MORE -91 ? 1 'SSA (A^2)' 20690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 61.4900000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 61.4900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 87.7400000000 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 87.7400000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-01 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2019-07-24 7 'Structure model' 1 6 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Refinement description' 11 7 'Structure model' 'Database references' 12 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_database_related 3 6 'Structure model' software 4 6 'Structure model' struct_conn 5 7 'Structure model' database_2 6 7 'Structure model' struct_ref_seq_dif 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.classification' 2 6 'Structure model' '_software.name' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 7 'Structure model' '_database_2.pdbx_DOI' 5 7 'Structure model' '_database_2.pdbx_database_accession' 6 7 'Structure model' '_struct_ref_seq_dif.details' 7 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.9050 _pdbx_refine_tls.origin_y 7.1650 _pdbx_refine_tls.origin_z 29.0850 _pdbx_refine_tls.T[1][1] 0.0047 _pdbx_refine_tls.T[2][2] -0.0036 _pdbx_refine_tls.T[3][3] -0.0011 _pdbx_refine_tls.T[1][2] 0.0014 _pdbx_refine_tls.T[1][3] -0.0128 _pdbx_refine_tls.T[2][3] 0.0144 _pdbx_refine_tls.L[1][1] 1.1105 _pdbx_refine_tls.L[2][2] 0.8983 _pdbx_refine_tls.L[3][3] 1.1127 _pdbx_refine_tls.L[1][2] -0.1773 _pdbx_refine_tls.L[1][3] -0.2288 _pdbx_refine_tls.L[2][3] 0.0830 _pdbx_refine_tls.S[1][1] -0.0173 _pdbx_refine_tls.S[1][2] 0.0099 _pdbx_refine_tls.S[1][3] -0.0212 _pdbx_refine_tls.S[2][1] -0.0314 _pdbx_refine_tls.S[2][2] 0.0247 _pdbx_refine_tls.S[2][3] 0.0693 _pdbx_refine_tls.S[3][1] -0.0308 _pdbx_refine_tls.S[3][2] -0.0846 _pdbx_refine_tls.S[3][3] -0.0074 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 11 _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 155 _pdbx_refine_tls_group.end_auth_seq_id 143 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement . ? 1 SCALA 'data scaling' . ? 2 RESOLVE 'model building' . ? 3 SOLVE phasing . ? 4 CNS refinement . ? 5 MOSFLM 'data reduction' . ? 6 XFIT 'data reduction' . ? 7 CCP4 'data scaling' '(SCALA)' ? 8 RESOLVE phasing . ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). THE BIOLOGICAL UNIT IS A TETRAMER WITH 222 POINT SYMMETRY, FORMED BY CRYSTALLOGRAPHIC SYMMETRY, AS ADJUDGED BY EXTENSIVE HYDROPHOBIC CONTACTS BETWEEN THESE UNITS. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 496 ? ? O A HOH 497 ? ? 1.86 2 1 O A HOH 476 ? ? O A HOH 478 ? ? 1.90 3 1 O A HOH 477 ? ? O A HOH 478 ? ? 2.10 4 1 O A HOH 493 ? ? O A HOH 494 ? ? 2.10 5 1 O A HOH 479 ? ? O A HOH 480 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 482 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 483 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_656 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 141 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 141 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 141 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.20 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.90 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH #