data_1O4W # _entry.id 1O4W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O4W pdb_00001o4w 10.2210/pdb1o4w/pdb RCSB RCSB001807 ? ? WWPDB D_1000001807 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 354418 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O4W _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-07-16 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution' _citation.journal_abbrev Proteins _citation.journal_volume 56 _citation.page_first 404 _citation.page_last 408 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15211526 _citation.pdbx_database_id_DOI 10.1002/prot.20090 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Levin, I.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'Page, R.' 3 ? primary 'Abdubek, P.' 4 ? primary 'Ambing, E.' 5 ? primary 'Biorac, T.' 6 ? primary 'Brinen, L.S.' 7 ? primary 'Campbell, J.' 8 ? primary 'Canaves, J.M.' 9 ? primary 'Chiu, H.J.' 10 ? primary 'Dai, X.' 11 ? primary 'Deacon, A.M.' 12 ? primary 'DiDonato, M.' 13 ? primary 'Elsliger, M.A.' 14 ? primary 'Floyd, R.' 15 ? primary 'Godzik, A.' 16 ? primary 'Grittini, C.' 17 ? primary 'Grzechnik, S.K.' 18 ? primary 'Hampton, E.' 19 ? primary 'Jaroszewski, L.' 20 ? primary 'Karlak, C.' 21 ? primary 'Klock, H.E.' 22 ? primary 'Koesema, E.' 23 ? primary 'Kovarik, J.S.' 24 ? primary 'Kreusch, A.' 25 ? primary 'Kuhn, P.' 26 ? primary 'Lesley, S.A.' 27 ? primary 'McMullan, D.' 28 ? primary 'McPhillips, T.M.' 29 ? primary 'Miller, M.D.' 30 ? primary 'Morse, A.' 31 ? primary 'Moy, K.' 32 ? primary 'Ouyang, J.' 33 ? primary 'Quijano, K.' 34 ? primary 'Reyes, R.' 35 ? primary 'Rezezadeh, F.' 36 ? primary 'Robb, A.' 37 ? primary 'Sims, E.' 38 ? primary 'Spraggon, G.' 39 ? primary 'Stevens, R.C.' 40 ? primary 'van den Bedem, H.' 41 ? primary 'Velasquez, J.' 42 ? primary 'Vincent, J.' 43 ? primary 'von Delft, F.' 44 ? primary 'Wang, X.' 45 ? primary 'West, B.' 46 ? primary 'Wolf, G.' 47 ? primary 'Xu, Q.' 48 ? primary 'Hodgson, K.O.' 49 ? primary 'Wooley, J.' 50 ? primary 'Wilson, I.A.' 51 ? # _cell.length_a 63.705 _cell.length_b 63.705 _cell.length_c 78.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1O4W _cell.pdbx_unique_axis ? _cell.Z_PDB 6 # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 1O4W _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PIN (PilT N-terminus) domain' 17142.221 1 ? ? ? ? 2 water nat water 18.015 90 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)EADRGRNNKVRCAVVDTNVL(MSE)YVYLNKADVVGQLREFGFSRFLITASVKRELEKL E(MSE)SLRGKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKEDKRVFVE LLD ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAA RFALKLLEHFEVVETESEGDPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKEDKRVFVELLD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 354418 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 GLU n 1 15 ALA n 1 16 ASP n 1 17 ARG n 1 18 GLY n 1 19 ARG n 1 20 ASN n 1 21 ASN n 1 22 LYS n 1 23 VAL n 1 24 ARG n 1 25 CYS n 1 26 ALA n 1 27 VAL n 1 28 VAL n 1 29 ASP n 1 30 THR n 1 31 ASN n 1 32 VAL n 1 33 LEU n 1 34 MSE n 1 35 TYR n 1 36 VAL n 1 37 TYR n 1 38 LEU n 1 39 ASN n 1 40 LYS n 1 41 ALA n 1 42 ASP n 1 43 VAL n 1 44 VAL n 1 45 GLY n 1 46 GLN n 1 47 LEU n 1 48 ARG n 1 49 GLU n 1 50 PHE n 1 51 GLY n 1 52 PHE n 1 53 SER n 1 54 ARG n 1 55 PHE n 1 56 LEU n 1 57 ILE n 1 58 THR n 1 59 ALA n 1 60 SER n 1 61 VAL n 1 62 LYS n 1 63 ARG n 1 64 GLU n 1 65 LEU n 1 66 GLU n 1 67 LYS n 1 68 LEU n 1 69 GLU n 1 70 MSE n 1 71 SER n 1 72 LEU n 1 73 ARG n 1 74 GLY n 1 75 LYS n 1 76 GLU n 1 77 LYS n 1 78 VAL n 1 79 ALA n 1 80 ALA n 1 81 ARG n 1 82 PHE n 1 83 ALA n 1 84 LEU n 1 85 LYS n 1 86 LEU n 1 87 LEU n 1 88 GLU n 1 89 HIS n 1 90 PHE n 1 91 GLU n 1 92 VAL n 1 93 VAL n 1 94 GLU n 1 95 THR n 1 96 GLU n 1 97 SER n 1 98 GLU n 1 99 GLY n 1 100 ASP n 1 101 PRO n 1 102 SER n 1 103 LEU n 1 104 ILE n 1 105 GLU n 1 106 ALA n 1 107 ALA n 1 108 GLU n 1 109 LYS n 1 110 TYR n 1 111 GLY n 1 112 CYS n 1 113 ILE n 1 114 LEU n 1 115 ILE n 1 116 THR n 1 117 ASN n 1 118 ASP n 1 119 LYS n 1 120 GLU n 1 121 LEU n 1 122 LYS n 1 123 ARG n 1 124 LYS n 1 125 ALA n 1 126 LYS n 1 127 GLN n 1 128 ARG n 1 129 GLY n 1 130 ILE n 1 131 PRO n 1 132 VAL n 1 133 GLY n 1 134 TYR n 1 135 LEU n 1 136 LYS n 1 137 GLU n 1 138 ASP n 1 139 LYS n 1 140 ARG n 1 141 VAL n 1 142 PHE n 1 143 VAL n 1 144 GLU n 1 145 LEU n 1 146 LEU n 1 147 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene AF0591 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2234 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O29664_ARCFU _struct_ref.pdbx_db_accession O29664 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHFEV VETESEGDPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKEDKRVFVELLD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O4W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O29664 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 135 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O4W MSE A 1 ? UNP O29664 ? ? 'expression tag' -11 1 1 1O4W GLY A 2 ? UNP O29664 ? ? 'expression tag' -10 2 1 1O4W SER A 3 ? UNP O29664 ? ? 'expression tag' -9 3 1 1O4W ASP A 4 ? UNP O29664 ? ? 'expression tag' -8 4 1 1O4W LYS A 5 ? UNP O29664 ? ? 'expression tag' -7 5 1 1O4W ILE A 6 ? UNP O29664 ? ? 'expression tag' -6 6 1 1O4W HIS A 7 ? UNP O29664 ? ? 'expression tag' -5 7 1 1O4W HIS A 8 ? UNP O29664 ? ? 'expression tag' -4 8 1 1O4W HIS A 9 ? UNP O29664 ? ? 'expression tag' -3 9 1 1O4W HIS A 10 ? UNP O29664 ? ? 'expression tag' -2 10 1 1O4W HIS A 11 ? UNP O29664 ? ? 'expression tag' -1 11 1 1O4W HIS A 12 ? UNP O29664 ? ? 'expression tag' 0 12 1 1O4W MSE A 13 ? UNP O29664 MET 1 'modified residue' 1 13 1 1O4W MSE A 34 ? UNP O29664 MET 22 'modified residue' 22 14 1 1O4W MSE A 70 ? UNP O29664 MET 58 'modified residue' 58 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1O4W # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 59.23 _exptl_crystal.density_Matthews 3.04 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30% MPD, MES buffer pH 6.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2003-04-17 _diffrn_detector.details 'flat mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98397 1.0 2 0.97922 1.0 3 0.91837 1.0 4 0.97855 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.98397, 0.97922, 0.91837, 0.97855' _diffrn_source.pdbx_wavelength ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 31.86 _reflns.number_all 14860 _reflns.number_obs 14860 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 25.3 _reflns.B_iso_Wilson_estimate 48.07 _reflns.pdbx_redundancy 8.8 _reflns.pdbx_Rsym_value 0.05 _reflns.entry_id 1O4W _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_all 99.9 _reflns_shell.pdbx_Rsym_value 0.638 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.number_unique_all 1058 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 31.86 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 14131 _refine.ls_number_reflns_R_free 728 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_percent_reflns_obs 99.87 _refine.ls_R_factor_obs 0.19059 _refine.ls_R_factor_R_work 0.18843 _refine.ls_R_factor_R_free 0.23508 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.B_iso_mean 41.843 _refine.aniso_B[1][1] 1.05 _refine.aniso_B[2][2] 1.05 _refine.aniso_B[3][3] -1.57 _refine.aniso_B[1][2] 0.52 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;1. The 9-sigma difference density peak on the crystallographic 2-fold axis between residues 126 and 128 was left unmodeled, but could indicate a metal ion. 2. The 2 TLS groups correspond to globular and tail portions of protein respectively. 3. Hydrogens have been added in the riding positions. ; _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.125 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 6.521 _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1O4W _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 974 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1064 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 31.86 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 998 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 965 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1345 1.225 1.984 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2223 0.758 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 124 5.088 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43 36.230 23.488 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 187 13.390 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 15.595 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 159 0.076 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1090 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 206 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 176 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 900 0.158 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 605 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 58 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 47 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 621 0.768 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 998 1.454 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 377 2.797 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 347 4.391 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1002 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_R_free 5.92 _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O4W _struct.title 'CRYSTAL STRUCTURE OF a PIN (PILT N-TERMINUS) DOMAIN CONTAINING PROTEIN (AF0591) FROM ARCHAEOGLOBUS FULGIDUS AT 1.90 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PIN (PILT N-TERMINUS) DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, TRANSLATION ; _struct_keywords.entry_id 1O4W _struct_keywords.pdbx_keywords TRANSLATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.details ;THE BIOLOGICAL UNIT IS PROPOSED TO BE A DIMER AROUND THE CRYTALLOGRAPHIC 2-FOLD AXIS. DIMERISATION IS MEDIATED BY AN EXPOSED 2-STRAND BETA SHEET COMPRISING THE HYDROPHILIC C-TERMINAL RESIDUES OF EACH SUBUNIT, THAT BRIDGES THE GLOBULAR DOMAINS OF EACH SUBUNIT. THIS IS CONSIDERED BIOLOGICALLY SIGNIFICANT BECAUSE OF IT LEADS TO CHAIN SWAPPING BETWEEN SUBUNITS. GENERATING THE BIOMOLECULE COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. APPLY THE FOLLOWING TO CHAINS: A, W BIOMT1 1 1.000000 0.000000 0.000000 0.00000 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 BIOMT2 2 0.000000 -1.000000 0.000000 110.69801 BIOMT3 2 0.000000 0.000000 -1.000000 -26.13300 ; _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 29 ? LYS A 40 ? ASP A 17 LYS A 28 1 ? 12 HELX_P HELX_P2 2 ASP A 42 ? PHE A 50 ? ASP A 30 PHE A 38 1 ? 9 HELX_P HELX_P3 3 ALA A 59 ? LEU A 72 ? ALA A 47 LEU A 60 1 ? 14 HELX_P HELX_P4 4 LYS A 75 ? GLU A 88 ? LYS A 63 GLU A 76 1 ? 14 HELX_P HELX_P5 5 GLY A 99 ? GLY A 111 ? GLY A 87 GLY A 99 1 ? 13 HELX_P HELX_P6 6 ASP A 118 ? ARG A 128 ? ASP A 106 ARG A 116 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 13 A CYS 100 1_555 ? ? ? ? ? ? ? 2.113 ? ? covale1 covale both ? A LEU 33 C ? ? ? 1_555 A MSE 34 N ? ? A LEU 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 34 C ? ? ? 1_555 A TYR 35 N ? ? A MSE 22 A TYR 23 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A GLU 69 C ? ? ? 1_555 A MSE 70 N ? ? A GLU 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 70 C ? ? ? 1_555 A SER 71 N ? ? A MSE 58 A SER 59 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 91 ? VAL A 93 ? GLU A 79 VAL A 81 A 2 PHE A 52 ? THR A 58 ? PHE A 40 THR A 46 A 3 ARG A 24 ? VAL A 28 ? ARG A 12 VAL A 16 A 4 ILE A 113 ? ILE A 115 ? ILE A 101 ILE A 103 A 5 VAL A 132 ? GLU A 144 ? VAL A 120 GLU A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 93 ? O VAL A 81 N ILE A 57 ? N ILE A 45 A 2 3 O LEU A 56 ? O LEU A 44 N ALA A 26 ? N ALA A 14 A 3 4 N VAL A 27 ? N VAL A 15 O ILE A 115 ? O ILE A 103 A 4 5 N GLU A 144 ? N GLU A 132 O GLY A 133 ? O GLY A 121 # _atom_sites.entry_id 1O4W _atom_sites.fract_transf_matrix[1][1] 0.015697 _atom_sites.fract_transf_matrix[1][2] 0.009063 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018126 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012814 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 ? ? ? A . n A 1 14 GLU 14 2 ? ? ? A . n A 1 15 ALA 15 3 ? ? ? A . n A 1 16 ASP 16 4 ? ? ? A . n A 1 17 ARG 17 5 ? ? ? A . n A 1 18 GLY 18 6 ? ? ? A . n A 1 19 ARG 19 7 ? ? ? A . n A 1 20 ASN 20 8 ? ? ? A . n A 1 21 ASN 21 9 ? ? ? A . n A 1 22 LYS 22 10 10 LYS LYS A . n A 1 23 VAL 23 11 11 VAL VAL A . n A 1 24 ARG 24 12 12 ARG ARG A . n A 1 25 CYS 25 13 13 CYS CYS A . n A 1 26 ALA 26 14 14 ALA ALA A . n A 1 27 VAL 27 15 15 VAL VAL A . n A 1 28 VAL 28 16 16 VAL VAL A . n A 1 29 ASP 29 17 17 ASP ASP A . n A 1 30 THR 30 18 18 THR THR A . n A 1 31 ASN 31 19 19 ASN ASN A . n A 1 32 VAL 32 20 20 VAL VAL A . n A 1 33 LEU 33 21 21 LEU LEU A . n A 1 34 MSE 34 22 22 MSE MSE A . n A 1 35 TYR 35 23 23 TYR TYR A . n A 1 36 VAL 36 24 24 VAL VAL A . n A 1 37 TYR 37 25 25 TYR TYR A . n A 1 38 LEU 38 26 26 LEU LEU A . n A 1 39 ASN 39 27 27 ASN ASN A . n A 1 40 LYS 40 28 28 LYS LYS A . n A 1 41 ALA 41 29 29 ALA ALA A . n A 1 42 ASP 42 30 30 ASP ASP A . n A 1 43 VAL 43 31 31 VAL VAL A . n A 1 44 VAL 44 32 32 VAL VAL A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 GLN 46 34 34 GLN GLN A . n A 1 47 LEU 47 35 35 LEU LEU A . n A 1 48 ARG 48 36 36 ARG ARG A . n A 1 49 GLU 49 37 37 GLU GLU A . n A 1 50 PHE 50 38 38 PHE PHE A . n A 1 51 GLY 51 39 39 GLY GLY A . n A 1 52 PHE 52 40 40 PHE PHE A . n A 1 53 SER 53 41 41 SER SER A . n A 1 54 ARG 54 42 42 ARG ARG A . n A 1 55 PHE 55 43 43 PHE PHE A . n A 1 56 LEU 56 44 44 LEU LEU A . n A 1 57 ILE 57 45 45 ILE ILE A . n A 1 58 THR 58 46 46 THR THR A . n A 1 59 ALA 59 47 47 ALA ALA A . n A 1 60 SER 60 48 48 SER SER A . n A 1 61 VAL 61 49 49 VAL VAL A . n A 1 62 LYS 62 50 50 LYS LYS A . n A 1 63 ARG 63 51 51 ARG ARG A . n A 1 64 GLU 64 52 52 GLU GLU A . n A 1 65 LEU 65 53 53 LEU LEU A . n A 1 66 GLU 66 54 54 GLU GLU A . n A 1 67 LYS 67 55 55 LYS LYS A . n A 1 68 LEU 68 56 56 LEU LEU A . n A 1 69 GLU 69 57 57 GLU GLU A . n A 1 70 MSE 70 58 58 MSE MSE A . n A 1 71 SER 71 59 59 SER SER A . n A 1 72 LEU 72 60 60 LEU LEU A . n A 1 73 ARG 73 61 61 ARG ARG A . n A 1 74 GLY 74 62 62 GLY GLY A . n A 1 75 LYS 75 63 63 LYS LYS A . n A 1 76 GLU 76 64 64 GLU GLU A . n A 1 77 LYS 77 65 65 LYS LYS A . n A 1 78 VAL 78 66 66 VAL VAL A . n A 1 79 ALA 79 67 67 ALA ALA A . n A 1 80 ALA 80 68 68 ALA ALA A . n A 1 81 ARG 81 69 69 ARG ARG A . n A 1 82 PHE 82 70 70 PHE PHE A . n A 1 83 ALA 83 71 71 ALA ALA A . n A 1 84 LEU 84 72 72 LEU LEU A . n A 1 85 LYS 85 73 73 LYS LYS A . n A 1 86 LEU 86 74 74 LEU LEU A . n A 1 87 LEU 87 75 75 LEU LEU A . n A 1 88 GLU 88 76 76 GLU GLU A . n A 1 89 HIS 89 77 77 HIS HIS A . n A 1 90 PHE 90 78 78 PHE PHE A . n A 1 91 GLU 91 79 79 GLU GLU A . n A 1 92 VAL 92 80 80 VAL VAL A . n A 1 93 VAL 93 81 81 VAL VAL A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 THR 95 83 83 THR THR A . n A 1 96 GLU 96 84 84 GLU GLU A . n A 1 97 SER 97 85 85 SER SER A . n A 1 98 GLU 98 86 86 GLU GLU A . n A 1 99 GLY 99 87 87 GLY GLY A . n A 1 100 ASP 100 88 88 ASP ASP A . n A 1 101 PRO 101 89 89 PRO PRO A . n A 1 102 SER 102 90 90 SER SER A . n A 1 103 LEU 103 91 91 LEU LEU A . n A 1 104 ILE 104 92 92 ILE ILE A . n A 1 105 GLU 105 93 93 GLU GLU A . n A 1 106 ALA 106 94 94 ALA ALA A . n A 1 107 ALA 107 95 95 ALA ALA A . n A 1 108 GLU 108 96 96 GLU GLU A . n A 1 109 LYS 109 97 97 LYS LYS A . n A 1 110 TYR 110 98 98 TYR TYR A . n A 1 111 GLY 111 99 99 GLY GLY A . n A 1 112 CYS 112 100 100 CYS CYS A . n A 1 113 ILE 113 101 101 ILE ILE A . n A 1 114 LEU 114 102 102 LEU LEU A . n A 1 115 ILE 115 103 103 ILE ILE A . n A 1 116 THR 116 104 104 THR THR A . n A 1 117 ASN 117 105 105 ASN ASN A . n A 1 118 ASP 118 106 106 ASP ASP A . n A 1 119 LYS 119 107 107 LYS LYS A . n A 1 120 GLU 120 108 108 GLU GLU A . n A 1 121 LEU 121 109 109 LEU LEU A . n A 1 122 LYS 122 110 110 LYS LYS A . n A 1 123 ARG 123 111 111 ARG ARG A . n A 1 124 LYS 124 112 112 LYS LYS A . n A 1 125 ALA 125 113 113 ALA ALA A . n A 1 126 LYS 126 114 114 LYS LYS A . n A 1 127 GLN 127 115 115 GLN GLN A . n A 1 128 ARG 128 116 116 ARG ARG A . n A 1 129 GLY 129 117 117 GLY GLY A . n A 1 130 ILE 130 118 118 ILE ILE A . n A 1 131 PRO 131 119 119 PRO PRO A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 GLY 133 121 121 GLY GLY A . n A 1 134 TYR 134 122 122 TYR TYR A . n A 1 135 LEU 135 123 123 LEU LEU A . n A 1 136 LYS 136 124 124 LYS LYS A . n A 1 137 GLU 137 125 125 GLU GLU A . n A 1 138 ASP 138 126 126 ASP ASP A . n A 1 139 LYS 139 127 127 LYS LYS A . n A 1 140 ARG 140 128 128 ARG ARG A . n A 1 141 VAL 141 129 129 VAL VAL A . n A 1 142 PHE 142 130 130 PHE PHE A . n A 1 143 VAL 143 131 131 VAL VAL A . n A 1 144 GLU 144 132 132 GLU GLU A . n A 1 145 LEU 145 133 133 LEU LEU A . n A 1 146 LEU 146 134 134 LEU LEU A . n A 1 147 ASP 147 135 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 136 1 HOH HOH A . B 2 HOH 2 137 2 HOH HOH A . B 2 HOH 3 138 3 HOH HOH A . B 2 HOH 4 139 4 HOH HOH A . B 2 HOH 5 140 5 HOH HOH A . B 2 HOH 6 141 6 HOH HOH A . B 2 HOH 7 142 7 HOH HOH A . B 2 HOH 8 143 8 HOH HOH A . B 2 HOH 9 144 10 HOH HOH A . B 2 HOH 10 145 11 HOH HOH A . B 2 HOH 11 146 12 HOH HOH A . B 2 HOH 12 147 13 HOH HOH A . B 2 HOH 13 148 14 HOH HOH A . B 2 HOH 14 149 15 HOH HOH A . B 2 HOH 15 150 16 HOH HOH A . B 2 HOH 16 151 17 HOH HOH A . B 2 HOH 17 152 18 HOH HOH A . B 2 HOH 18 153 19 HOH HOH A . B 2 HOH 19 154 20 HOH HOH A . B 2 HOH 20 155 21 HOH HOH A . B 2 HOH 21 156 22 HOH HOH A . B 2 HOH 22 157 23 HOH HOH A . B 2 HOH 23 158 24 HOH HOH A . B 2 HOH 24 159 26 HOH HOH A . B 2 HOH 25 160 27 HOH HOH A . B 2 HOH 26 161 28 HOH HOH A . B 2 HOH 27 162 29 HOH HOH A . B 2 HOH 28 163 30 HOH HOH A . B 2 HOH 29 164 31 HOH HOH A . B 2 HOH 30 165 32 HOH HOH A . B 2 HOH 31 166 33 HOH HOH A . B 2 HOH 32 167 34 HOH HOH A . B 2 HOH 33 168 35 HOH HOH A . B 2 HOH 34 169 36 HOH HOH A . B 2 HOH 35 170 37 HOH HOH A . B 2 HOH 36 171 38 HOH HOH A . B 2 HOH 37 172 39 HOH HOH A . B 2 HOH 38 173 40 HOH HOH A . B 2 HOH 39 174 41 HOH HOH A . B 2 HOH 40 175 42 HOH HOH A . B 2 HOH 41 176 43 HOH HOH A . B 2 HOH 42 177 44 HOH HOH A . B 2 HOH 43 178 45 HOH HOH A . B 2 HOH 44 179 47 HOH HOH A . B 2 HOH 45 180 48 HOH HOH A . B 2 HOH 46 181 49 HOH HOH A . B 2 HOH 47 182 50 HOH HOH A . B 2 HOH 48 183 51 HOH HOH A . B 2 HOH 49 184 52 HOH HOH A . B 2 HOH 50 185 54 HOH HOH A . B 2 HOH 51 186 55 HOH HOH A . B 2 HOH 52 187 57 HOH HOH A . B 2 HOH 53 188 60 HOH HOH A . B 2 HOH 54 189 61 HOH HOH A . B 2 HOH 55 190 62 HOH HOH A . B 2 HOH 56 191 63 HOH HOH A . B 2 HOH 57 192 64 HOH HOH A . B 2 HOH 58 193 66 HOH HOH A . B 2 HOH 59 194 67 HOH HOH A . B 2 HOH 60 195 68 HOH HOH A . B 2 HOH 61 196 69 HOH HOH A . B 2 HOH 62 197 71 HOH HOH A . B 2 HOH 63 198 72 HOH HOH A . B 2 HOH 64 199 74 HOH HOH A . B 2 HOH 65 200 76 HOH HOH A . B 2 HOH 66 201 78 HOH HOH A . B 2 HOH 67 202 79 HOH HOH A . B 2 HOH 68 203 85 HOH HOH A . B 2 HOH 69 204 86 HOH HOH A . B 2 HOH 70 205 88 HOH HOH A . B 2 HOH 71 206 89 HOH HOH A . B 2 HOH 72 207 91 HOH HOH A . B 2 HOH 73 208 92 HOH HOH A . B 2 HOH 74 209 93 HOH HOH A . B 2 HOH 75 210 94 HOH HOH A . B 2 HOH 76 211 95 HOH HOH A . B 2 HOH 77 212 96 HOH HOH A . B 2 HOH 78 213 97 HOH HOH A . B 2 HOH 79 214 98 HOH HOH A . B 2 HOH 80 215 99 HOH HOH A . B 2 HOH 81 216 100 HOH HOH A . B 2 HOH 82 217 102 HOH HOH A . B 2 HOH 83 218 104 HOH HOH A . B 2 HOH 84 219 105 HOH HOH A . B 2 HOH 85 220 107 HOH HOH A . B 2 HOH 86 221 110 HOH HOH A . B 2 HOH 87 222 111 HOH HOH A . B 2 HOH 88 223 112 HOH HOH A . B 2 HOH 89 224 113 HOH HOH A . B 2 HOH 90 225 115 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 22 ? MET SELENOMETHIONINE 2 A MSE 70 A MSE 58 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2330 ? 1 MORE -17 ? 1 'SSA (A^2)' 14090 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 110.3402966962 0.0000000000 0.0000000000 -1.0000000000 -26.0133333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-29 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 . refined 56.3132 47.7225 9.2870 -0.0670 -0.2584 -0.1765 -0.0825 0.0478 -0.0177 4.5974 4.2970 3.5207 2.1167 -0.6487 -0.2629 0.0334 -0.0849 0.0515 -0.2224 0.0734 0.0989 0.1117 -0.2143 -0.0942 'X-RAY DIFFRACTION' 2 . refined 60.0962 54.7720 -16.8151 0.0545 0.0753 -0.0388 0.0914 -0.0245 0.0303 0.3666 0.6474 47.5234 0.3073 -3.6367 -0.9358 0.2636 -0.5630 0.2993 0.0196 -0.2699 0.1617 0.2281 -0.2894 1.5029 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 22 A 134 ALL A 10 A 122 'X-RAY DIFFRACTION' ? 2 2 A 135 A 146 ALL A 123 A 134 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' '4.2)' ? 2 SOLVE phasing . ? 3 RESOLVE 'model building' . ? 4 REFMAC refinement 5.1.9999 ? 5 CCP4 'data scaling' '(SCALA)' ? 6 RESOLVE phasing . ? 7 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). THE BIOLOGICAL UNIT IS PROPOSED TO BE A DIMER AROUND THE CRYTALLOGRAPHIC 2-FOLD AXIS. DIMERISATION IS MEDIATED BY AN EXPOSED 2-STRAND BETA SHEET COMPRISING THE HYDROPHILIC C-TERMINAL RESIDUES OF EACH SUBUNIT, THAT BRIDGES THE GLOBULAR DOMAINS OF EACH SUBUNIT. THIS IS CONSIDERED BIOLOGICALLY SIGNIFICANT BECAUSE OF IT LEADS TO CHAIN SWAPPING BETWEEN SUBUNITS. ; 650 ;HELIX DETERMINATION METHOD: AUTHOR ; 700 ;SHEET DETERMINATION METHOD: AUTHOR ; # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 10 ? CE ? A LYS 22 CE 2 1 Y 1 A LYS 10 ? NZ ? A LYS 22 NZ 3 1 Y 1 A LYS 28 ? CD ? A LYS 40 CD 4 1 Y 1 A LYS 28 ? CE ? A LYS 40 CE 5 1 Y 1 A LYS 28 ? NZ ? A LYS 40 NZ 6 1 Y 1 A LYS 73 ? CD ? A LYS 85 CD 7 1 Y 1 A LYS 73 ? CE ? A LYS 85 CE 8 1 Y 1 A LYS 73 ? NZ ? A LYS 85 NZ 9 1 Y 1 A LYS 107 ? CG ? A LYS 119 CG 10 1 Y 1 A LYS 107 ? CD ? A LYS 119 CD 11 1 Y 1 A LYS 107 ? CE ? A LYS 119 CE 12 1 Y 1 A LYS 107 ? NZ ? A LYS 119 NZ 13 1 Y 1 A GLU 108 ? CG ? A GLU 120 CG 14 1 Y 1 A GLU 108 ? CD ? A GLU 120 CD 15 1 Y 1 A GLU 108 ? OE1 ? A GLU 120 OE1 16 1 Y 1 A GLU 108 ? OE2 ? A GLU 120 OE2 17 1 Y 1 A LYS 112 ? CD ? A LYS 124 CD 18 1 Y 1 A LYS 112 ? CE ? A LYS 124 CE 19 1 Y 1 A LYS 112 ? NZ ? A LYS 124 NZ 20 1 Y 1 A LYS 114 ? CG ? A LYS 126 CG 21 1 Y 1 A LYS 114 ? CD ? A LYS 126 CD 22 1 Y 1 A LYS 114 ? CE ? A LYS 126 CE 23 1 Y 1 A LYS 114 ? NZ ? A LYS 126 NZ 24 1 Y 1 A GLN 115 ? CG ? A GLN 127 CG 25 1 Y 1 A GLN 115 ? CD ? A GLN 127 CD 26 1 Y 1 A GLN 115 ? OE1 ? A GLN 127 OE1 27 1 Y 1 A GLN 115 ? NE2 ? A GLN 127 NE2 28 1 Y 1 A ARG 116 ? NE ? A ARG 128 NE 29 1 Y 1 A ARG 116 ? CZ ? A ARG 128 CZ 30 1 Y 1 A ARG 116 ? NH1 ? A ARG 128 NH1 31 1 Y 1 A ARG 116 ? NH2 ? A ARG 128 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A MSE 1 ? A MSE 13 14 1 Y 1 A GLU 2 ? A GLU 14 15 1 Y 1 A ALA 3 ? A ALA 15 16 1 Y 1 A ASP 4 ? A ASP 16 17 1 Y 1 A ARG 5 ? A ARG 17 18 1 Y 1 A GLY 6 ? A GLY 18 19 1 Y 1 A ARG 7 ? A ARG 19 20 1 Y 1 A ASN 8 ? A ASN 20 21 1 Y 1 A ASN 9 ? A ASN 21 22 1 Y 1 A ASP 135 ? A ASP 147 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #