HEADER IMMUNE SYSTEM 11-FEB-03 1OCW TITLE FREE CONFORMATION AB2 OF THE IGE SPE-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN E; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FV REGION, RESIDUES 1-121; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMMUNOGLOBULIN E; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: FV REGION, RESIDUES 1-120; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: EXPRESSED AS RECOMBINANT FV IN E.COLI; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 OTHER_DETAILS: EXPRESSED AS RECOMBINANT FV IN E.COLI KEYWDS ANTIBODY, ALLERGY, CONFORMATIONAL DIVERSITY, IMMUNE SYSTEM, KEYWDS 2 MULTISPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR L.C.JAMES,P.ROVERSI,D.TAWFIK REVDAT 5 13-DEC-23 1OCW 1 REMARK REVDAT 4 30-OCT-13 1OCW 1 SOURCE REMARK VERSN REVDAT 3 27-OCT-10 1OCW 1 HEADER KEYWDS REMARK REVDAT 2 24-FEB-09 1OCW 1 VERSN REVDAT 1 05-FEB-04 1OCW 0 JRNL AUTH L.C.JAMES,P.ROVERSI,D.TAWFIK JRNL TITL ANTIBODY MULTISPECIFICITY MEDIATED BY CONFORMATIONAL JRNL TITL 2 DIVERSITY JRNL REF SCIENCE V. 299 1362 2003 JRNL REFN ISSN 0036-8075 JRNL PMID 12610298 JRNL DOI 10.1126/SCIENCE.1079731 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 13457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.267 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.266 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 695 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT OF TWINNING FRACTION: REMARK 3 ALPHA=0.50(05). REFINEMENT WITH IDEALISED HYDROGEN ATOMS TWINNED REMARK 3 DATA; APPARENT SYMMETRY I422; TWINNING OPERATOR REMARK 4 REMARK 4 1OCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 28.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH7.5, 70% MPD, PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.77250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.77250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.85150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.77250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.77250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.85150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.77250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.77250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.85150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 39.77250 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.77250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.85150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 18290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 79.54500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 79.54500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 79.54500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 79.54500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 121 REMARK 465 GLN L 111 REMARK 465 PRO L 112 REMARK 465 LYS L 113 REMARK 465 SER L 114 REMARK 465 SER L 115 REMARK 465 PRO L 116 REMARK 465 SER L 117 REMARK 465 VAL L 118 REMARK 465 THR L 119 REMARK 465 LEU L 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ3 TRP H 47 CB PHE L 100 2.00 REMARK 500 CB TRP H 110 O PHE L 46 2.00 REMARK 500 NZ LYS H 74 O HOH H 2030 2.01 REMARK 500 OG1 THR L 30 O HOH L 2006 2.09 REMARK 500 CG LYS H 74 O HOH H 2015 2.11 REMARK 500 CD2 TRP H 110 CB PHE L 46 2.12 REMARK 500 CG TRP H 110 CB PHE L 46 2.12 REMARK 500 OE2 GLU H 1 O HOH H 2001 2.15 REMARK 500 CH2 TRP H 47 N PHE L 100 2.16 REMARK 500 OH TYR H 95 ND1 HIS L 44 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN H 112 OG SER L 8 3655 0.50 REMARK 500 OE1 GLN H 112 C SER L 8 3655 0.52 REMARK 500 NE2 GLN H 3 CG LEU L 10 3655 0.95 REMARK 500 OE1 GLN H 112 N ALA L 9 3655 0.97 REMARK 500 NE2 GLN H 3 CD1 LEU L 10 3655 1.08 REMARK 500 CB GLU H 89 CA SER H 120 4565 1.08 REMARK 500 CD GLN H 112 C SER L 8 3655 1.09 REMARK 500 CB GLU H 89 C SER H 120 4565 1.10 REMARK 500 N GLY H 42 CB THR H 115 4565 1.13 REMARK 500 NH1 ARG H 43 CG2 THR H 117 4565 1.17 REMARK 500 CG GLN H 5 CB GLU L 7 3655 1.19 REMARK 500 CB ALA H 9 N ARG H 43 3655 1.27 REMARK 500 CG GLU H 89 CA SER H 120 4565 1.28 REMARK 500 CG GLN H 5 CG GLU L 7 3655 1.29 REMARK 500 CD GLN H 112 O SER L 8 3655 1.30 REMARK 500 CB ALA H 9 CA ARG H 43 3655 1.30 REMARK 500 NH2 ARG H 43 O THR H 117 4565 1.33 REMARK 500 CA GLY H 42 CB THR H 115 4565 1.38 REMARK 500 NE2 GLN H 112 CB SER L 8 3655 1.39 REMARK 500 CB ALA H 9 C ARG H 43 3655 1.42 REMARK 500 NE2 GLN H 3 CD2 LEU L 10 3655 1.43 REMARK 500 CB GLU H 89 CB SER H 120 4565 1.49 REMARK 500 CB ALA H 9 C GLY H 42 3655 1.52 REMARK 500 N GLY H 42 OG1 THR H 115 4565 1.53 REMARK 500 CA ALA H 9 O GLY H 42 3655 1.55 REMARK 500 CB GLU H 89 O SER H 120 4565 1.56 REMARK 500 OE1 GLN H 112 CA SER L 8 3655 1.56 REMARK 500 CB GLN H 112 NZ LYS L 105 3655 1.60 REMARK 500 CB GLN H 3 CD2 LEU L 10 3655 1.67 REMARK 500 CG GLN H 112 O SER L 8 3655 1.67 REMARK 500 CG GLU H 89 OG SER H 120 4565 1.67 REMARK 500 CG GLN H 3 CD2 LEU L 10 3655 1.67 REMARK 500 CG GLU H 89 CB SER H 120 4565 1.68 REMARK 500 CB ALA H 9 O GLY H 42 3655 1.68 REMARK 500 CD GLN H 3 CD2 LEU L 10 3655 1.69 REMARK 500 N ALA H 9 O GLY H 42 3655 1.70 REMARK 500 OE1 GLN H 112 O SER L 8 3655 1.70 REMARK 500 CA GLY H 42 OG1 THR H 115 4565 1.72 REMARK 500 N GLU H 89 OG SER H 120 4565 1.74 REMARK 500 CA GLU H 89 CB SER H 120 4565 1.78 REMARK 500 CD GLN H 112 OG SER L 8 3655 1.81 REMARK 500 CA ALA H 9 C GLY H 42 3655 1.81 REMARK 500 CB GLN H 5 CA GLU L 7 3655 1.82 REMARK 500 CG GLN H 112 CB ALA L 9 3655 1.85 REMARK 500 C GLY H 8 O GLY H 42 3655 1.85 REMARK 500 O GLY H 8 O GLY H 42 3655 1.85 REMARK 500 CB ALA H 9 N GLY H 44 3655 1.86 REMARK 500 NZ LYS H 23 CG2 THR L 5 3655 1.89 REMARK 500 CD GLN H 112 N ALA L 9 3655 1.91 REMARK 500 N GLY H 42 CG2 THR H 115 4565 1.91 REMARK 500 REMARK 500 THIS ENTRY HAS 75 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 43 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP H 100 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 TYR H 102 C - N - CA ANGL. DEV. = 26.8 DEGREES REMARK 500 TYR H 106 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 32 60.74 146.42 REMARK 500 TRP H 33 160.25 -20.27 REMARK 500 PRO H 41 150.40 -24.76 REMARK 500 ILE H 48 -61.88 -156.63 REMARK 500 TYR H 60 -145.01 -132.12 REMARK 500 SER H 66 -71.37 -68.80 REMARK 500 ALA H 68 159.35 -47.92 REMARK 500 THR H 69 142.61 178.78 REMARK 500 SER H 76 -60.93 175.72 REMARK 500 SER H 77 51.01 131.02 REMARK 500 ALA H 92 -175.40 170.65 REMARK 500 MET H 99 -158.19 -133.19 REMARK 500 TRP H 100 -146.79 58.96 REMARK 500 TYR H 101 79.10 8.29 REMARK 500 TYR H 102 -52.14 -2.12 REMARK 500 THR H 104 -75.93 -73.14 REMARK 500 TYR H 105 104.83 177.51 REMARK 500 TYR H 106 43.81 -177.84 REMARK 500 PHE H 107 155.04 174.17 REMARK 500 ALA L 9 158.97 176.54 REMARK 500 ASP L 43 36.65 78.66 REMARK 500 THR L 53 -55.67 71.48 REMARK 500 TYR L 94 79.36 -118.14 REMARK 500 SER L 95 -61.98 79.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO H 41 GLY H 42 -149.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OAQ RELATED DB: PDB REMARK 900 FV IGE SPE-7 FREE CONFORMATION AB1 REMARK 900 RELATED ID: 1OAR RELATED DB: PDB REMARK 900 FV IGE SPE-7 IN COMPLEX WITH ALIZARIN RED REMARK 900 RELATED ID: 1OAU RELATED DB: PDB REMARK 900 FV STRUCTURE OF THE IGE SPE-7 IN COMPLEX WITH DNP-SER (IMMUNISING REMARK 900 HAPTEN) REMARK 900 RELATED ID: 1OAX RELATED DB: PDB REMARK 900 FV STRUCTURE OF THE IGE SPE-7 IN COMPLEX WITH ACENAPHTHENEQUINONE REMARK 900 RELATED ID: 1OAY RELATED DB: PDB REMARK 900 ANTIBODY MULTISPECIFICITY MEDIATED BY CONFORMATIONAL DIVERSITY REMARK 900 RELATED ID: 1OAZ RELATED DB: PDB REMARK 900 IGE FV SPE7 COMPLEXED WITH A RECOMBINANT THIOREDOXIN DBREF 1OCW H 1 121 PDB 1OCW 1OCW 1 121 DBREF 1OCW L 1 120 PDB 1OCW 1OCW 1 120 SEQRES 1 H 121 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 121 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 121 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 121 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 121 PRO ASN GLY GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 121 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 H 121 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG MET TRP TYR TYR GLY THR SEQRES 9 H 121 TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 H 121 VAL SER SER ALA SEQRES 1 L 120 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 120 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 120 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 120 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 120 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 120 GLY SER LEU ILE GLY ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 L 120 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 120 LEU TRP TYR SER ASN HIS LEU VAL PHE GLY GLY GLY THR SEQRES 9 L 120 LYS LEU THR VAL LEU GLU GLN PRO LYS SER SER PRO SER SEQRES 10 L 120 VAL THR LEU FORMUL 3 HOH *68(H2 O) HELIX 1 1 THR L 30 TYR L 34 5 5 SHEET 1 HA 4 LEU H 4 GLN H 5 0 SHEET 2 HA 4 VAL H 18 ALA H 24 -1 O LYS H 23 N GLN H 5 SHEET 3 HA 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HA 4 LEU H 70 ASP H 73 -1 O THR H 71 N TYR H 80 SHEET 1 HB 4 ALA H 9 VAL H 12 0 SHEET 2 HB 4 THR H 114 VAL H 118 1 O THR H 115 N GLU H 10 SHEET 3 HB 4 ALA H 92 ARG H 98 -1 O ALA H 92 N LEU H 116 SHEET 4 HB 4 HIS H 35 GLN H 39 -1 O HIS H 35 N ALA H 97 SHEET 1 HC 4 ALA H 9 VAL H 12 0 SHEET 2 HC 4 THR H 114 VAL H 118 1 O THR H 115 N GLU H 10 SHEET 3 HC 4 ALA H 92 ARG H 98 -1 O ALA H 92 N LEU H 116 SHEET 4 HC 4 TYR H 109 TRP H 110 -1 O TYR H 109 N ARG H 98 SHEET 1 LA 4 VAL L 4 GLN L 6 0 SHEET 2 LA 4 VAL L 18 SER L 24 -1 O ARG L 23 N THR L 5 SHEET 3 LA 4 LYS L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 4 LA 4 PHE L 64 ILE L 69 -1 O SER L 65 N THR L 76 SHEET 1 LB 6 ALA L 9 THR L 12 0 SHEET 2 LB 6 THR L 104 VAL L 108 1 O LYS L 105 N LEU L 10 SHEET 3 LB 6 ALA L 86 TRP L 93 -1 O ALA L 86 N LEU L 106 SHEET 4 LB 6 ASN L 36 LYS L 41 -1 O ASN L 36 N ALA L 91 SHEET 5 LB 6 LEU L 45 GLY L 51 -1 O LEU L 45 N LYS L 41 SHEET 6 LB 6 ASN L 55 ARG L 56 -1 O ASN L 55 N GLY L 51 SHEET 1 LC 4 ALA L 9 THR L 12 0 SHEET 2 LC 4 THR L 104 VAL L 108 1 O LYS L 105 N LEU L 10 SHEET 3 LC 4 ALA L 86 TRP L 93 -1 O ALA L 86 N LEU L 106 SHEET 4 LC 4 LEU L 98 PHE L 100 -1 O VAL L 99 N LEU L 92 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS L 22 CYS L 90 1555 1555 2.03 CISPEP 1 GLU H 1 VAL H 2 0 -8.71 CISPEP 2 SER H 25 GLY H 26 0 8.67 CISPEP 3 GLY H 26 TYR H 27 0 -1.55 CISPEP 4 PHE H 29 THR H 30 0 -6.89 CISPEP 5 THR H 30 SER H 31 0 2.92 CISPEP 6 ARG H 98 MET H 99 0 25.36 CISPEP 7 TYR H 101 TYR H 102 0 6.12 CISPEP 8 TYR H 105 TYR H 106 0 0.18 CISPEP 9 VAL H 118 SER H 119 0 -2.69 CISPEP 10 LEU L 109 GLU L 110 0 -5.75 CRYST1 79.545 79.545 67.703 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014770 0.00000