HEADER STRUCTURAL PROTEIN 11-FEB-03 1OCY TITLE STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF THE BACTERIOPHAGE T4 SHORT TITLE 2 TAIL FIBRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHAGE T4 SHORT TAIL FIBRE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR-BINDING DOMAIN, RESIDUES 330-527; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 STRAIN: D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21+; SOURCE 10 OTHER_DETAILS: VARIANT AS PRESENT IN LABORATORY OF S. MILLER. CO- SOURCE 11 EXPRESSION WITH GP57 CHAPERONE KEYWDS STRUCTURAL PROTEIN, FIBROUS PROTEIN, LIPO-POLYSACCHARIDE BINDING, KEYWDS 2 BACTERIOPHAGE STRUCTURAL PROTEIN, BASEPLATE PROTEIN, GENE PRODUCT 12 EXPDTA X-RAY DIFFRACTION AUTHOR E.THOMASSEN,G.GIELEN,M.SCHUETZ,S.MILLER,M.J.VAN RAAIJ REVDAT 3 07-FEB-18 1OCY 1 AUTHOR JRNL REVDAT 2 24-FEB-09 1OCY 1 VERSN REVDAT 1 24-JUL-03 1OCY 0 JRNL AUTH E.THOMASSEN,G.GIELEN,M.SCHUETZ,G.SCHOEHN,J.P.ABRAHAMS, JRNL AUTH 2 S.MILLER,M.J.VAN RAAIJ JRNL TITL THE STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF THE JRNL TITL 2 BACTERIOPHAGE T4 SHORT TAIL FIBRE REVEALS A KNITTED TRIMERIC JRNL TITL 3 METAL-BINDING FOLD JRNL REF J.MOL.BIOL. V. 331 361 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12888344 JRNL DOI 10.1016/S0022-2836(03)00755-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.R.BURDA,S.MILLER REMARK 1 TITL CRYSTAL STRUCTURE OF A HEAT- AND PROTEASE-STABLE PART OF THE REMARK 1 TITL 2 BACTERIOPHAGE T4 SHORT TAIL FIBRE REMARK 1 REF J.MOL.BIOL. V. 314 1137 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11743729 REMARK 1 DOI 10.1006/JMBI.2000.5204 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.JAQUINOD,K.ASHMAN,M.R.BURDA, REMARK 1 AUTH 2 S.MILLER REMARK 1 TITL IDENTIFICATION AND CRYSTALLISATION OF A HEAT- AND REMARK 1 TITL 2 PROTEASE-STABLE FRAGMENT OF THE BACTERIOPHAGE T4 SHORT TAIL REMARK 1 TITL 3 FIBRE REMARK 1 REF BIOL.CHEM. V. 382 1049 2001 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 11530935 REMARK 1 DOI 10.1515/BC.2001.131 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.R.BURDA,I.HINDENNACH,S.MILLER REMARK 1 TITL STABILITY OF BACTERIOPHAGE T4 SHORT TAIL FIBER REMARK 1 REF BIOL.CHEM. V. 381 255 2000 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 10782996 REMARK 1 DOI 10.1515/BC.2000.032 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.R.BURDA,S.MILLER REMARK 1 TITL FOLDING OF COLIPHAGE T4 SHORT TAIL FIBER IN VITRO. ANALYSING REMARK 1 TITL 2 THE ROLE OF A BACTERIOPHAGE-ENCODED CHAPERONE REMARK 1 REF EUR.J.BIOCHEM. V. 265 771 1999 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 10504409 REMARK 1 DOI 10.1046/J.1432-1327.1999.00782.X REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 94341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.066 REMARK 3 FREE R VALUE TEST SET COUNT : 1922 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.530 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 85-329 COULD NOT BE MODELLED REMARK 3 DUE TO DISORDER REMARK 4 REMARK 4 1OCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9464 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 6.560 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1220 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.13 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25 % (V/V),2-METHYLPROPANE-2-OL REMARK 280 (TERTIARY BUTANOL), 100 MM SODIUM CITRATE PH 5.6, 10% (V/V) REMARK 280 GLYCEROL,10 MM HEPES, 150 MM SODIUM CHLORIDE, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 25.39100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 43.97850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -25.39100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 43.97850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1530 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A1531 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2264 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2354 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2447 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2452 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2515 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 506 CD GLU A 506 OE1 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 491 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 457 19.78 -142.93 REMARK 500 SER A 466 -148.75 -164.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2190 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A2191 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH A2192 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH A2193 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A2194 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2196 DISTANCE = 9.49 ANGSTROMS REMARK 525 HOH A2197 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A2198 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH A2199 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH A2248 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2287 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2323 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A2334 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A2351 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A2365 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2372 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A2377 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2384 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A2386 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2388 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A2389 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2390 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2398 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A2401 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2402 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2404 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A2405 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2406 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A2407 DISTANCE = 10.00 ANGSTROMS REMARK 525 HOH A2411 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A2412 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A2414 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A2415 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A2421 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A2422 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH A2423 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH A2424 DISTANCE = 8.82 ANGSTROMS REMARK 525 HOH A2425 DISTANCE = 10.64 ANGSTROMS REMARK 525 HOH A2426 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A2427 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH A2433 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A2443 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A2444 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH A2445 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH A2446 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2447 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A2448 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH A2449 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH A2456 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A2457 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A2458 DISTANCE = 10.48 ANGSTROMS REMARK 525 HOH A2459 DISTANCE = 10.39 ANGSTROMS REMARK 525 HOH A2460 DISTANCE = 10.65 ANGSTROMS REMARK 525 HOH A2463 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2464 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A2466 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A2468 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A2469 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A2474 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1531 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 447 NE2 REMARK 620 2 HIS A 447 NE2 89.1 REMARK 620 3 HIS A 445 NE2 87.0 175.0 REMARK 620 4 HIS A 445 NE2 93.8 86.8 90.4 REMARK 620 5 HIS A 447 NE2 89.2 89.1 93.9 174.8 REMARK 620 6 HIS A 445 NE2 175.1 93.7 90.5 90.4 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A1528 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H6W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HEAT- AND PROTEASE- STABLE FRAGMENT OF THE REMARK 900 BACTERIOPHAGE T4 SHORT FIBRE REMARK 999 REMARK 999 SEQUENCE REMARK 999 T4D STRAIN VARIANT, SEQUENCE ANALYSIS REMARK 999 OF EXPRESSION PLASMID PERFORMED IN THE REMARK 999 LABORATORY OF S. MILLER DBREF 1OCY A 330 527 UNP Q38160 VG12_BPT4 330 527 SEQADV 1OCY SER A 386 UNP Q38160 THR 386 CONFLICT SEQRES 1 A 198 ARG VAL VAL THR GLN ASN GLU ILE ASP ARG THR ILE PRO SEQRES 2 A 198 VAL GLY ALA ILE MET MET TRP ALA ALA ASP SER LEU PRO SEQRES 3 A 198 SER ASP ALA TRP ARG PHE CYS HIS GLY GLY THR VAL SER SEQRES 4 A 198 ALA SER ASP CYS PRO LEU TYR ALA SER ARG ILE GLY THR SEQRES 5 A 198 ARG TYR GLY GLY SER SER SER ASN PRO GLY LEU PRO ASP SEQRES 6 A 198 MET ARG GLY LEU PHE VAL ARG GLY SER GLY ARG GLY SER SEQRES 7 A 198 HIS LEU THR ASN PRO ASN VAL ASN GLY ASN ASP GLN PHE SEQRES 8 A 198 GLY LYS PRO ARG LEU GLY VAL GLY CYS THR GLY GLY TYR SEQRES 9 A 198 VAL GLY GLU VAL GLN LYS GLN GLN MET SER TYR HIS LYS SEQRES 10 A 198 HIS ALA GLY GLY PHE GLY GLU TYR ASP ASP SER GLY ALA SEQRES 11 A 198 PHE GLY ASN THR ARG ARG SER ASN PHE VAL GLY THR ARG SEQRES 12 A 198 LYS GLY LEU ASP TRP ASP ASN ARG SER TYR PHE THR ASN SEQRES 13 A 198 ASP GLY TYR GLU ILE ASP PRO ALA SER GLN ARG ASN SER SEQRES 14 A 198 ARG TYR THR LEU ASN ARG PRO GLU LEU ILE GLY ASN GLU SEQRES 15 A 198 THR ARG PRO TRP ASN ILE SER LEU ASN TYR ILE ILE LYS SEQRES 16 A 198 VAL LYS GLU HET CIT A1528 13 HET SO4 A1529 5 HET SO4 A1530 5 HET ZN A1531 1 HETNAM CIT CITRIC ACID HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 CIT C6 H8 O7 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *516(H2 O) HELIX 1 1 GLN A 334 ILE A 341 1 8 HELIX 2 2 CYS A 372 ILE A 379 1 8 HELIX 3 3 GLY A 406 ASN A 411 1 6 HELIX 4 4 PRO A 412 ASN A 415 5 4 HELIX 5 5 PRO A 492 ARG A 496 5 5 HELIX 6 6 ASN A 497 THR A 501 5 5 SHEET 1 AA 3 ILE A 346 TRP A 349 0 SHEET 2 AA 3 ASN A 520 LYS A 524 -1 O ASN A 520 N TRP A 349 SHEET 3 AA 3 TRP A 359 PHE A 361 -1 O ARG A 360 N ILE A 523 LINK ZN ZN A1531 NE2 HIS A 447 1555 2665 2.25 LINK ZN ZN A1531 NE2 HIS A 447 1555 3565 2.25 LINK ZN ZN A1531 NE2 HIS A 445 1555 1555 2.22 LINK ZN ZN A1531 NE2 HIS A 445 1555 2665 2.22 LINK ZN ZN A1531 NE2 HIS A 447 1555 1555 2.25 LINK ZN ZN A1531 NE2 HIS A 445 1555 3565 2.22 SITE 1 AC1 9 ARG A 464 ARG A 465 ARG A 480 GLN A 495 SITE 2 AC1 9 TYR A 500 CIT A1528 HOH A2470 HOH A2512 SITE 3 AC1 9 HOH A2513 SITE 1 AC2 5 SER A 386 SER A 387 HOH A2514 HOH A2515 SITE 2 AC2 5 HOH A2516 SITE 1 AC3 2 HIS A 445 HIS A 447 SITE 1 AC4 13 GLY A 421 TYR A 454 ASP A 455 ASP A 456 SITE 2 AC4 13 ARG A 465 ARG A 480 PRO A 492 ASN A 497 SITE 3 AC4 13 SER A 498 SO4 A1529 HOH A2510 HOH A2511 SITE 4 AC4 13 HOH A2512 CRYST1 50.782 50.782 435.647 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019692 0.011369 0.000000 0.00000 SCALE2 0.000000 0.022738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002295 0.00000