HEADER HYDROLASE 17-MAR-03 1ODZ TITLE EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUCE DEFINED MANNO- TITLE 2 OLIGOSACCHARIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 39-423; COMPND 5 SYNONYM: MANNANASE 26A,MAN26A,MANNANASE A,MANA; COMPND 6 EC: 3.2.1.78; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: COMPLEX WITH MANNOBIOSE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 GENE: MANA, MAN26A, CJA_2770; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS HYDROLASE, MANNANASE, FAMILY 26, GLYCOSIDE-HYDROLASE, GLYCOSYNTHASE, KEYWDS 2 MANNO-OLIGOSACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.JAHN,D.STOLL,R.A.J.WARREN,L.SZABO,P.SINGH,H.J.GILBERT,V.M.A.DUCROS, AUTHOR 2 G.J.DAVIES,S.G.WITHERS REVDAT 5 13-DEC-23 1ODZ 1 HETSYN REVDAT 4 29-JUL-20 1ODZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 20-JUN-18 1ODZ 1 COMPND SOURCE JRNL DBREF REVDAT 3 2 1 SEQADV REVDAT 2 24-FEB-09 1ODZ 1 VERSN REVDAT 1 10-JUL-03 1ODZ 0 JRNL AUTH M.JAHN,D.STOLL,R.A.J.WARREN,L.SZABO,P.SINGH,H.J.GILBERT, JRNL AUTH 2 V.M.A.DUCROS,G.J.DAVIES,S.G.WITHERS JRNL TITL EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUCE DEFINED JRNL TITL 2 MANNO-OLIGOSACCHARIDES JRNL REF CHEM.COMMUN.(CAMB.) V. 12 1327 2003 JRNL REFN ISSN 1359-7345 JRNL PMID 12841226 JRNL DOI 10.1039/B302380J REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 162650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 446 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 1033 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6337 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5464 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8657 ; 1.400 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12682 ; 1.279 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 6.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7130 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1358 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1305 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6568 ; 0.254 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3344 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 651 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 13 ; 0.124 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3781 ; 0.952 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6117 ; 1.401 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2556 ; 1.932 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2540 ; 2.822 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 44 A 88 4 REMARK 3 1 B 44 B 88 4 REMARK 3 2 A 90 A 422 4 REMARK 3 2 B 90 B 422 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ODZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 171242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.010 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.23 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1J9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS 7.5, 26% PEG550, 9MM ZNSO4, REMARK 280 10MM MANNOTETRAOSE, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.13400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.56700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.70100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION: GLU (320) GLY REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 38 REMARK 465 ARG A 39 REMARK 465 ALA A 40 REMARK 465 ASP A 41 REMARK 465 PRO A 370 REMARK 465 ASN A 371 REMARK 465 LYS A 423 REMARK 465 MET B 38 REMARK 465 ARG B 39 REMARK 465 ALA B 40 REMARK 465 ASP B 41 REMARK 465 PRO B 370 REMARK 465 ASN B 371 REMARK 465 LYS B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 VAL B 422 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 190 O HOH A 2268 2.09 REMARK 500 OE1 GLU B 190 O HOH B 2291 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 123 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 123 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 170 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 115 -50.46 -125.17 REMARK 500 HIS A 377 84.39 -151.27 REMARK 500 ILE B 115 -50.06 -128.24 REMARK 500 HIS B 377 85.20 -157.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2053 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2063 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B2072 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B2073 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1423 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 HIS A 71 NE2 91.8 REMARK 620 3 GLU A 239 OE2 104.0 104.9 REMARK 620 4 TRS A1424 N 98.7 128.1 121.1 REMARK 620 5 TRS A1424 O3 168.8 86.4 87.1 74.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1427 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 69 O REMARK 620 2 SER A 72 O 94.6 REMARK 620 3 ARG A 352 O 99.9 135.5 REMARK 620 4 ILE A 354 O 106.4 104.5 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1423 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 67 OE2 REMARK 620 2 HIS B 71 NE2 90.8 REMARK 620 3 GLU B 239 OE2 103.5 106.9 REMARK 620 4 TRS B1426 O3 169.0 84.3 87.3 REMARK 620 5 TRS B1426 N 99.0 124.3 123.2 75.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1427 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 69 O REMARK 620 2 SER B 72 O 95.4 REMARK 620 3 ARG B 352 O 100.3 136.1 REMARK 620 4 ILE B 354 O 106.8 104.6 109.5 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-28 COMPRISE THE SIGNAL PEPTIDE. REMARK 999 MATURE CRYSTALLISED FORM OF MAN26A E320G MUTANT REMARK 999 CONSISTS OF RESIDUES MET-38 TO LYS-423. DBREF 1ODZ A 39 423 UNP P49424 MANA_CELJU 39 423 DBREF 1ODZ B 39 423 UNP P49424 MANA_CELJU 39 423 SEQADV 1ODZ MET A 38 UNP P49424 INITIATING METHIONINE SEQADV 1ODZ GLY A 320 UNP P49424 GLU 320 ENGINEERED MUTATION SEQADV 1ODZ MET B 38 UNP P49424 INITIATING METHIONINE SEQADV 1ODZ GLY B 320 UNP P49424 GLU 320 ENGINEERED MUTATION SEQRES 1 A 386 MET ARG ALA ASP VAL LYS PRO VAL THR VAL LYS LEU VAL SEQRES 2 A 386 ASP SER GLN ALA THR MET GLU THR ARG SER LEU PHE ALA SEQRES 3 A 386 PHE MET GLN GLU GLN ARG ARG HIS SER ILE MET PHE GLY SEQRES 4 A 386 HIS GLN HIS GLU THR THR GLN GLY LEU THR ILE THR ARG SEQRES 5 A 386 THR ASP GLY THR GLN SER ASP THR PHE ASN ALA VAL GLY SEQRES 6 A 386 ASP PHE ALA ALA VAL TYR GLY TRP ASP THR LEU SER ILE SEQRES 7 A 386 VAL ALA PRO LYS ALA GLU GLY ASP ILE VAL ALA GLN VAL SEQRES 8 A 386 LYS LYS ALA TYR ALA ARG GLY GLY ILE ILE THR VAL SER SEQRES 9 A 386 SER HIS PHE ASP ASN PRO LYS THR ASP THR GLN LYS GLY SEQRES 10 A 386 VAL TRP PRO VAL GLY THR SER TRP ASP GLN THR PRO ALA SEQRES 11 A 386 VAL VAL ASP SER LEU PRO GLY GLY ALA TYR ASN PRO VAL SEQRES 12 A 386 LEU ASN GLY TYR LEU ASP GLN VAL ALA GLU TRP ALA ASN SEQRES 13 A 386 ASN LEU LYS ASP GLU GLN GLY ARG LEU ILE PRO VAL ILE SEQRES 14 A 386 PHE ARG LEU TYR HIS GLU ASN THR GLY SER TRP PHE TRP SEQRES 15 A 386 TRP GLY ASP LYS GLN SER THR PRO GLU GLN TYR LYS GLN SEQRES 16 A 386 LEU PHE ARG TYR SER VAL GLU TYR LEU ARG ASP VAL LYS SEQRES 17 A 386 GLY VAL ARG ASN PHE LEU TYR ALA TYR SER PRO ASN ASN SEQRES 18 A 386 PHE TRP ASP VAL THR GLU ALA ASN TYR LEU GLU ARG TYR SEQRES 19 A 386 PRO GLY ASP GLU TRP VAL ASP VAL LEU GLY PHE ASP THR SEQRES 20 A 386 TYR GLY PRO VAL ALA ASP ASN ALA ASP TRP PHE ARG ASN SEQRES 21 A 386 VAL VAL ALA ASN ALA ALA LEU VAL ALA ARG MET ALA GLU SEQRES 22 A 386 ALA ARG GLY LYS ILE PRO VAL ILE SER GLY ILE GLY ILE SEQRES 23 A 386 ARG ALA PRO ASP ILE GLU ALA GLY LEU TYR ASP ASN GLN SEQRES 24 A 386 TRP TYR ARG LYS LEU ILE SER GLY LEU LYS ALA ASP PRO SEQRES 25 A 386 ASP ALA ARG GLU ILE ALA PHE LEU LEU VAL TRP ARG ASN SEQRES 26 A 386 ALA PRO GLN GLY VAL PRO GLY PRO ASN GLY THR GLN VAL SEQRES 27 A 386 PRO HIS TYR TRP VAL PRO ALA ASN ARG PRO GLU ASN ILE SEQRES 28 A 386 ASN ASN GLY THR LEU GLU ASP PHE GLN ALA PHE TYR ALA SEQRES 29 A 386 ASP GLU PHE THR ALA PHE ASN ARG ASP ILE GLU GLN VAL SEQRES 30 A 386 TYR GLN ARG PRO THR LEU ILE VAL LYS SEQRES 1 B 386 MET ARG ALA ASP VAL LYS PRO VAL THR VAL LYS LEU VAL SEQRES 2 B 386 ASP SER GLN ALA THR MET GLU THR ARG SER LEU PHE ALA SEQRES 3 B 386 PHE MET GLN GLU GLN ARG ARG HIS SER ILE MET PHE GLY SEQRES 4 B 386 HIS GLN HIS GLU THR THR GLN GLY LEU THR ILE THR ARG SEQRES 5 B 386 THR ASP GLY THR GLN SER ASP THR PHE ASN ALA VAL GLY SEQRES 6 B 386 ASP PHE ALA ALA VAL TYR GLY TRP ASP THR LEU SER ILE SEQRES 7 B 386 VAL ALA PRO LYS ALA GLU GLY ASP ILE VAL ALA GLN VAL SEQRES 8 B 386 LYS LYS ALA TYR ALA ARG GLY GLY ILE ILE THR VAL SER SEQRES 9 B 386 SER HIS PHE ASP ASN PRO LYS THR ASP THR GLN LYS GLY SEQRES 10 B 386 VAL TRP PRO VAL GLY THR SER TRP ASP GLN THR PRO ALA SEQRES 11 B 386 VAL VAL ASP SER LEU PRO GLY GLY ALA TYR ASN PRO VAL SEQRES 12 B 386 LEU ASN GLY TYR LEU ASP GLN VAL ALA GLU TRP ALA ASN SEQRES 13 B 386 ASN LEU LYS ASP GLU GLN GLY ARG LEU ILE PRO VAL ILE SEQRES 14 B 386 PHE ARG LEU TYR HIS GLU ASN THR GLY SER TRP PHE TRP SEQRES 15 B 386 TRP GLY ASP LYS GLN SER THR PRO GLU GLN TYR LYS GLN SEQRES 16 B 386 LEU PHE ARG TYR SER VAL GLU TYR LEU ARG ASP VAL LYS SEQRES 17 B 386 GLY VAL ARG ASN PHE LEU TYR ALA TYR SER PRO ASN ASN SEQRES 18 B 386 PHE TRP ASP VAL THR GLU ALA ASN TYR LEU GLU ARG TYR SEQRES 19 B 386 PRO GLY ASP GLU TRP VAL ASP VAL LEU GLY PHE ASP THR SEQRES 20 B 386 TYR GLY PRO VAL ALA ASP ASN ALA ASP TRP PHE ARG ASN SEQRES 21 B 386 VAL VAL ALA ASN ALA ALA LEU VAL ALA ARG MET ALA GLU SEQRES 22 B 386 ALA ARG GLY LYS ILE PRO VAL ILE SER GLY ILE GLY ILE SEQRES 23 B 386 ARG ALA PRO ASP ILE GLU ALA GLY LEU TYR ASP ASN GLN SEQRES 24 B 386 TRP TYR ARG LYS LEU ILE SER GLY LEU LYS ALA ASP PRO SEQRES 25 B 386 ASP ALA ARG GLU ILE ALA PHE LEU LEU VAL TRP ARG ASN SEQRES 26 B 386 ALA PRO GLN GLY VAL PRO GLY PRO ASN GLY THR GLN VAL SEQRES 27 B 386 PRO HIS TYR TRP VAL PRO ALA ASN ARG PRO GLU ASN ILE SEQRES 28 B 386 ASN ASN GLY THR LEU GLU ASP PHE GLN ALA PHE TYR ALA SEQRES 29 B 386 ASP GLU PHE THR ALA PHE ASN ARG ASP ILE GLU GLN VAL SEQRES 30 B 386 TYR GLN ARG PRO THR LEU ILE VAL LYS HET MAN C 1 12 HET BMA C 2 11 HET MAN D 1 12 HET BMA D 2 11 HET ZN A1423 1 HET TRS A1424 8 HET NA A1427 1 HET ZN B1423 1 HET TRS B1426 8 HET NA B1427 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN TRS TRIS BUFFER FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 TRS 2(C4 H12 N O3 1+) FORMUL 7 NA 2(NA 1+) FORMUL 11 HOH *1033(H2 O) HELIX 1 1 THR A 55 ARG A 69 1 15 HELIX 2 2 SER A 95 GLY A 102 1 8 HELIX 3 3 LEU A 113 ILE A 115 5 3 HELIX 4 4 ILE A 124 ARG A 134 1 11 HELIX 5 5 THR A 149 LYS A 153 5 5 HELIX 6 6 TYR A 177 ASN A 194 1 18 HELIX 7 7 THR A 226 ASP A 243 1 18 HELIX 8 8 THR A 263 GLU A 269 1 7 HELIX 9 9 ASN A 291 GLY A 313 1 23 HELIX 10 10 ARG A 324 ALA A 330 1 7 HELIX 11 11 GLN A 336 ASP A 348 1 13 HELIX 12 12 ASP A 350 ILE A 354 5 5 HELIX 13 13 ARG A 384 ASN A 390 1 7 HELIX 14 14 GLY A 391 ASP A 402 1 12 HELIX 15 15 PHE A 407 ILE A 411 5 5 HELIX 16 16 THR B 55 ARG B 69 1 15 HELIX 17 17 SER B 95 GLY B 102 1 8 HELIX 18 18 LEU B 113 ILE B 115 5 3 HELIX 19 19 ILE B 124 ARG B 134 1 11 HELIX 20 20 THR B 149 LYS B 153 5 5 HELIX 21 21 VAL B 168 LEU B 172 5 5 HELIX 22 22 TYR B 177 ASN B 194 1 18 HELIX 23 23 THR B 226 ASP B 243 1 18 HELIX 24 24 THR B 263 GLU B 269 1 7 HELIX 25 25 ASN B 291 GLY B 313 1 23 HELIX 26 26 ARG B 324 ALA B 330 1 7 HELIX 27 27 GLN B 336 ASP B 348 1 13 HELIX 28 28 ASP B 350 ILE B 354 5 5 HELIX 29 29 ARG B 384 GLY B 391 1 8 HELIX 30 30 GLY B 391 ASP B 402 1 12 HELIX 31 31 PHE B 407 ILE B 411 5 5 SHEET 1 AA 2 VAL A 45 THR A 46 0 SHEET 2 AA 2 THR A 419 LEU A 420 1 N LEU A 420 O VAL A 45 SHEET 1 AB 8 ILE A 315 PRO A 316 0 SHEET 2 AB 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AB 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AB 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AB 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AB 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AB 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AB 8 THR A 405 ALA A 406 1 O ALA A 406 N PHE A 75 SHEET 1 AC 8 ILE A 315 PRO A 316 0 SHEET 2 AC 8 VAL A 279 LEU A 280 1 N LEU A 280 O ILE A 315 SHEET 3 AC 8 PHE A 250 TYR A 254 1 N TYR A 254 O VAL A 279 SHEET 4 AC 8 VAL A 205 ARG A 208 1 O VAL A 205 N LEU A 251 SHEET 5 AC 8 ILE A 137 SER A 141 1 O ILE A 138 N ILE A 206 SHEET 6 AC 8 VAL A 107 ASP A 111 1 O TYR A 108 N THR A 139 SHEET 7 AC 8 ILE A 73 GLN A 78 1 O PHE A 75 N VAL A 107 SHEET 8 AC 8 PHE A 356 VAL A 359 1 O LEU A 357 N GLY A 76 SHEET 1 AD 2 ASP A 283 GLY A 286 0 SHEET 2 AD 2 GLY A 320 ILE A 323 1 O GLY A 320 N THR A 284 SHEET 1 AE 2 VAL A 367 PRO A 368 0 SHEET 2 AE 2 GLN A 374 VAL A 375 -1 O VAL A 375 N VAL A 367 SHEET 1 BA 2 VAL B 45 THR B 46 0 SHEET 2 BA 2 THR B 419 LEU B 420 1 N LEU B 420 O VAL B 45 SHEET 1 BB 8 ILE B 315 PRO B 316 0 SHEET 2 BB 8 VAL B 279 LEU B 280 1 N LEU B 280 O ILE B 315 SHEET 3 BB 8 PHE B 250 TYR B 254 1 N TYR B 254 O VAL B 279 SHEET 4 BB 8 VAL B 205 ARG B 208 1 O VAL B 205 N LEU B 251 SHEET 5 BB 8 ILE B 137 SER B 141 1 O ILE B 138 N ILE B 206 SHEET 6 BB 8 VAL B 107 ASP B 111 1 O TYR B 108 N THR B 139 SHEET 7 BB 8 ILE B 73 GLN B 78 1 O PHE B 75 N VAL B 107 SHEET 8 BB 8 THR B 405 ALA B 406 1 O ALA B 406 N PHE B 75 SHEET 1 BC 8 ILE B 315 PRO B 316 0 SHEET 2 BC 8 VAL B 279 LEU B 280 1 N LEU B 280 O ILE B 315 SHEET 3 BC 8 PHE B 250 TYR B 254 1 N TYR B 254 O VAL B 279 SHEET 4 BC 8 VAL B 205 ARG B 208 1 O VAL B 205 N LEU B 251 SHEET 5 BC 8 ILE B 137 SER B 141 1 O ILE B 138 N ILE B 206 SHEET 6 BC 8 VAL B 107 ASP B 111 1 O TYR B 108 N THR B 139 SHEET 7 BC 8 ILE B 73 GLN B 78 1 O PHE B 75 N VAL B 107 SHEET 8 BC 8 PHE B 356 VAL B 359 1 O LEU B 357 N GLY B 76 SHEET 1 BD 2 ASP B 283 GLY B 286 0 SHEET 2 BD 2 GLY B 320 ILE B 323 1 O GLY B 320 N THR B 284 SHEET 1 BE 2 VAL B 367 PRO B 368 0 SHEET 2 BE 2 GLN B 374 VAL B 375 -1 O VAL B 375 N VAL B 367 LINK O4 MAN C 1 C1 BMA C 2 1555 1555 1.43 LINK O4 MAN D 1 C1 BMA D 2 1555 1555 1.41 LINK OE2 GLU A 67 ZN ZN A1423 1555 1555 2.05 LINK O ARG A 69 NA NA A1427 1555 1555 2.24 LINK NE2 HIS A 71 ZN ZN A1423 1555 1555 2.01 LINK O SER A 72 NA NA A1427 1555 1555 2.27 LINK OE2 GLU A 239 ZN ZN A1423 3555 1555 1.93 LINK O ARG A 352 NA NA A1427 1555 1555 2.23 LINK O ILE A 354 NA NA A1427 1555 1555 2.25 LINK ZN ZN A1423 N TRS A1424 1555 1555 2.01 LINK ZN ZN A1423 O3 TRS A1424 1555 1555 2.43 LINK OE2 GLU B 67 ZN ZN B1423 1555 1555 1.98 LINK O ARG B 69 NA NA B1427 1555 1555 2.24 LINK NE2 HIS B 71 ZN ZN B1423 1555 1555 2.02 LINK O SER B 72 NA NA B1427 1555 1555 2.28 LINK OE2 GLU B 239 ZN ZN B1423 3655 1555 1.99 LINK O ARG B 352 NA NA B1427 1555 1555 2.28 LINK O ILE B 354 NA NA B1427 1555 1555 2.27 LINK ZN ZN B1423 O3 TRS B1426 1555 1555 2.39 LINK ZN ZN B1423 N TRS B1426 1555 1555 2.04 CISPEP 1 ALA A 117 PRO A 118 0 6.00 CISPEP 2 TRP A 156 PRO A 157 0 8.85 CISPEP 3 ALA B 117 PRO B 118 0 8.57 CISPEP 4 TRP B 156 PRO B 157 0 5.04 CRYST1 131.855 131.855 54.268 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018427 0.00000 MTRIX1 1 -0.999260 0.038330 -0.001570 65.89867 1 MTRIX2 1 -0.038320 -0.999260 -0.001550 65.95024 1 MTRIX3 1 -0.001630 -0.001490 1.000000 27.31247 1