HEADER PRION PROTEIN 27-MAR-03 1OEI TITLE HUMAN PRION PROTEIN 61-84 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 61-84; COMPND 5 SYNONYM: PRP, PRION PROTEIN, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET A KEYWDS PRION PROTEIN, OCTAPEPTIDE REPEATS, NMR STRUCTURE, PROTEIN KEYWDS 2 AGGREGATION, PH-DEPENDENT CONFORMATION, BRAIN, DISEASE KEYWDS 3 MUTATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.ZAHN REVDAT 2 24-FEB-09 1OEI 1 VERSN REVDAT 1 06-MAY-04 1OEI 0 JRNL AUTH R.ZAHN JRNL TITL THE OCTAPEPTIDE REPEATS IN MAMMALIAN PRION PROTEIN JRNL TITL 2 CONSTITUTE A PH-DEPENDENT FOLDING AND AGGREGATION JRNL TITL 3 SITE JRNL REF J.MOL.BIOL. V. 334 477 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14623188 JRNL DOI 10.1016/J.JMB.2003.09.048 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : KORADI, BILLETER, GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OEI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-03. REMARK 100 THE PDBE ID CODE IS EBI-12471. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 REMARK 210 SPECTROMETER MODEL : DRX800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED ON 15N-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PHYSIOLOGICAL FUNCTION OF PRP IS UNKNOWN REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 76 -94.32 -67.01 REMARK 500 2 PRO A 68 -153.47 -75.97 REMARK 500 3 PRO A 68 -178.27 -68.89 REMARK 500 4 PRO A 76 -126.42 -77.31 REMARK 500 6 PRO A 76 78.96 -69.66 REMARK 500 7 PRO A 76 -71.04 -80.28 REMARK 500 10 PRO A 68 -168.97 -76.16 REMARK 500 11 GLN A 83 -58.00 -121.54 REMARK 500 12 PRO A 76 42.30 -77.87 REMARK 500 13 PRO A 76 -164.88 -75.77 REMARK 500 13 GLN A 83 -55.85 -128.49 REMARK 500 14 PRO A 68 83.65 -64.99 REMARK 500 16 PRO A 68 -75.30 -75.75 REMARK 500 17 GLN A 67 -71.00 -71.20 REMARK 500 17 PRO A 68 88.64 -62.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 75 PRO A 76 2 148.21 REMARK 500 HIS A 69 GLY A 70 8 -149.14 REMARK 500 HIS A 77 GLY A 78 20 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TRP A 73 0.06 SIDE CHAIN REMARK 500 18 TRP A 65 0.06 SIDE CHAIN REMARK 500 19 TRP A 65 0.06 SIDE CHAIN REMARK 500 19 TRP A 73 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E1G RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT M166V REMARK 900 RELATED ID: 1E1J RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT M166V REMARK 900 RELATED ID: 1E1P RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT S170N REMARK 900 RELATED ID: 1E1S RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT S170N REMARK 900 RELATED ID: 1E1U RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT R220K REMARK 900 RELATED ID: 1E1W RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT R220K REMARK 900 RELATED ID: 1FKC RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN (MUTANT E200K) FRAGMENT 90-231 REMARK 900 RELATED ID: 1FO7 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN (MUTANT E200K) FRAGMENT 90-231 REMARK 900 RELATED ID: 1H0L RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN 121-230 M166C/E221C REMARK 900 RELATED ID: 1HJM RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN AT PH 7.0 REMARK 900 RELATED ID: 1HJN RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN AT PH 7.0 REMARK 900 RELATED ID: 1I4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN PRION PROTEIN REMARK 900 REVEALS A MECHANISM FOR OLIGOMERIZATION REMARK 900 RELATED ID: 1OEH RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN 61-68 REMARK 900 RELATED ID: 1QLX RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN REMARK 900 RELATED ID: 1QLZ RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN REMARK 900 RELATED ID: 1QM0 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 90-230 REMARK 900 RELATED ID: 1QM1 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 90-230 REMARK 900 RELATED ID: 1QM2 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 121-230 REMARK 900 RELATED ID: 1QM3 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 121-230 DBREF 1OEI A 61 84 UNP P04156 PRIO_HUMAN 61 84 SEQRES 1 A 24 HIS GLY GLY GLY TRP GLY GLN PRO HIS GLY GLY GLY TRP SEQRES 2 A 24 GLY GLN PRO HIS GLY GLY GLY TRP GLY GLN PRO CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1