data_1OIX # _entry.id 1OIX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1OIX pdb_00001oix 10.2210/pdb1oix/pdb PDBE EBI-12945 ? ? WWPDB D_1290012945 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1OIV unspecified 'X-RAY STRUCTURE OF THE SMALL G PROTEIN RAB11A IN COMPLEX WITH GDP' PDB 1OIW unspecified 'X-RAY STRUCTURE OF THE SMALL G PROTEIN RAB11A IN COMPLEX WITH GTPGAMMAS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OIX _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-06-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pasqualato, S.' 1 'Senic-Matuglia, F.' 2 'Renault, L.' 3 'Goud, B.' 4 'Salamero, J.' 5 'Cherfils, J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystallographic Evidence for Substrate-Assisted GTP Hydrolysis by a Small GTP Binding Protein' Structure 13 533 ? 2005 STRUE6 UK 0969-2126 2005 ? 15837192 10.1016/J.STR.2005.01.014 1 'The Structural Gdp/GTP Cycle of Rab11 Reveals a Novel Interface Involved in the Dynamics of Recycling Endosomes' J.Biol.Chem. 279 11480 ? 2004 JBCHA3 US 0021-9258 0071 ? 14699104 10.1074/JBC.M310558200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pasqualato, S.' 1 ? primary 'Cherfils, J.' 2 ? 1 'Pasqualato, S.' 3 ? 1 'Senic-Matuglia, F.' 4 ? 1 'Renault, L.' 5 ? 1 'Goud, B.' 6 ? 1 'Salamero, J.' 7 ? 1 'Cherfils, J.' 8 ? # _cell.entry_id 1OIX _cell.length_a 74.077 _cell.length_b 74.077 _cell.length_c 124.905 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OIX _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAS-RELATED PROTEIN RAB-11A' 21525.260 1 ? YES 'RESIDUES 1-173' 'DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES' 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 6 water nat water 18.015 163 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RAB-11,24KG, YL8, RAB11A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF AEKNGLSFIETSALDSTNVEAAFQTILTEIY ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF AEKNGLSFIETSALDSTNVEAAFQTILTEIY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 ILE n 1 13 PRO n 1 14 LEU n 1 15 PRO n 1 16 GLY n 1 17 ARG n 1 18 ALA n 1 19 MET n 1 20 GLY n 1 21 THR n 1 22 ARG n 1 23 ASP n 1 24 ASP n 1 25 GLU n 1 26 TYR n 1 27 ASP n 1 28 TYR n 1 29 LEU n 1 30 PHE n 1 31 LYS n 1 32 VAL n 1 33 VAL n 1 34 LEU n 1 35 ILE n 1 36 GLY n 1 37 ASP n 1 38 SER n 1 39 GLY n 1 40 VAL n 1 41 GLY n 1 42 LYS n 1 43 SER n 1 44 ASN n 1 45 LEU n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 PHE n 1 50 THR n 1 51 ARG n 1 52 ASN n 1 53 GLU n 1 54 PHE n 1 55 ASN n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 LYS n 1 60 SER n 1 61 THR n 1 62 ILE n 1 63 GLY n 1 64 VAL n 1 65 GLU n 1 66 PHE n 1 67 ALA n 1 68 THR n 1 69 ARG n 1 70 SER n 1 71 ILE n 1 72 GLN n 1 73 VAL n 1 74 ASP n 1 75 GLY n 1 76 LYS n 1 77 THR n 1 78 ILE n 1 79 LYS n 1 80 ALA n 1 81 GLN n 1 82 ILE n 1 83 TRP n 1 84 ASP n 1 85 THR n 1 86 ALA n 1 87 GLY n 1 88 LEU n 1 89 GLU n 1 90 ARG n 1 91 TYR n 1 92 ARG n 1 93 ALA n 1 94 ILE n 1 95 THR n 1 96 SER n 1 97 ALA n 1 98 TYR n 1 99 TYR n 1 100 ARG n 1 101 GLY n 1 102 ALA n 1 103 VAL n 1 104 GLY n 1 105 ALA n 1 106 LEU n 1 107 LEU n 1 108 VAL n 1 109 TYR n 1 110 ASP n 1 111 ILE n 1 112 ALA n 1 113 LYS n 1 114 HIS n 1 115 LEU n 1 116 THR n 1 117 TYR n 1 118 GLU n 1 119 ASN n 1 120 VAL n 1 121 GLU n 1 122 ARG n 1 123 TRP n 1 124 LEU n 1 125 LYS n 1 126 GLU n 1 127 LEU n 1 128 ARG n 1 129 ASP n 1 130 HIS n 1 131 ALA n 1 132 ASP n 1 133 SER n 1 134 ASN n 1 135 ILE n 1 136 VAL n 1 137 ILE n 1 138 MET n 1 139 LEU n 1 140 VAL n 1 141 GLY n 1 142 ASN n 1 143 LYS n 1 144 SER n 1 145 ASP n 1 146 LEU n 1 147 ARG n 1 148 HIS n 1 149 LEU n 1 150 ARG n 1 151 ALA n 1 152 VAL n 1 153 PRO n 1 154 THR n 1 155 ASP n 1 156 GLU n 1 157 ALA n 1 158 ARG n 1 159 ALA n 1 160 PHE n 1 161 ALA n 1 162 GLU n 1 163 LYS n 1 164 ASN n 1 165 GLY n 1 166 LEU n 1 167 SER n 1 168 PHE n 1 169 ILE n 1 170 GLU n 1 171 THR n 1 172 SER n 1 173 ALA n 1 174 LEU n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 ASN n 1 179 VAL n 1 180 GLU n 1 181 ALA n 1 182 ALA n 1 183 PHE n 1 184 GLN n 1 185 THR n 1 186 ILE n 1 187 LEU n 1 188 THR n 1 189 GLU n 1 190 ILE n 1 191 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1OIX 1 ? ? 1OIX ? 2 UNP R11A_HUMAN 1 ? ? P24410 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OIX A 1 ? 18 ? 1OIX -18 ? -1 ? -18 -1 2 2 1OIX A 19 ? 191 ? P24410 1 ? 173 ? 1 173 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1OIX _struct_ref_seq_dif.mon_id LEU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 88 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P24410 _struct_ref_seq_dif.db_mon_id GLN _struct_ref_seq_dif.pdbx_seq_db_seq_num 70 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 70 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1OIX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.19 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.4 M NACL, 0.15 M NAH2PO4, 0.15 M KH2PO4,0.1 M NAMES PH6.5, pH 6.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2002-11-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1OIX _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 19517 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.04600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.2000 _reflns.B_iso_Wilson_estimate 17.1 _reflns.pdbx_redundancy 12.600 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.27900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1OIX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19373 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.201 _refine.ls_R_factor_R_free 0.229 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.4 _refine.ls_number_reflns_R_free 1620 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.1 _refine.aniso_B[1][1] 0.37 _refine.aniso_B[2][2] 0.37 _refine.aniso_B[3][3] -0.73 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.373497 _refine.solvent_model_param_bsol 44.052 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'FINAL ROUND OF REFINEMENT WAS CARRIED OUT WITH REFMAC' _refine.pdbx_starting_model 'PDB ENTRY 1OIW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1OIX _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1330 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 1528 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 3.97 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 2845 _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.percent_reflns_obs 98.3 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_R_free 9.0 _refine_ls_shell.number_reflns_R_free 281 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 GDP_XPLOR_PAR.TXT GDP_XPLOR_TOP.TXT 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _struct.entry_id 1OIX _struct.title 'X-ray structure of the small G protein Rab11a in complex with GDP and Pi' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OIX _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'SMALL G PROTEIN, INTRACELLULAR TRAFFICKING, GTP-BINDING, LIPOPROTEIN, PRENYLATION, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 41 ? ASN A 52 ? GLY A 23 ASN A 34 1 ? 12 HELX_P HELX_P2 2 THR A 95 ? ARG A 100 ? THR A 77 ARG A 82 1 ? 6 HELX_P HELX_P3 3 LYS A 113 ? ASN A 119 ? LYS A 95 ASN A 101 1 ? 7 HELX_P HELX_P4 4 ASN A 119 ? ALA A 131 ? ASN A 101 ALA A 113 1 ? 13 HELX_P HELX_P5 5 LYS A 143 ? ARG A 150 ? LYS A 125 ARG A 132 5 ? 8 HELX_P HELX_P6 6 PRO A 153 ? ASN A 164 ? PRO A 135 ASN A 146 1 ? 12 HELX_P HELX_P7 7 ASN A 178 ? TYR A 191 ? ASN A 160 TYR A 173 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 43 OG ? ? ? 1_555 D MG . MG ? ? A SER 25 A MG 301 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc2 metalc ? ? A THR 61 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 43 A MG 301 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc3 metalc ? ? B GDP . O3B ? ? ? 1_555 D MG . MG ? ? A GDP 201 A MG 301 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc4 metalc ? ? C PO4 . O1 ? ? ? 1_555 D MG . MG ? ? A PO4 202 A MG 301 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 2069 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 2161 1_555 ? ? ? ? ? ? ? 2.108 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 64 ? VAL A 73 ? VAL A 46 VAL A 55 AA 2 LYS A 76 ? THR A 85 ? LYS A 58 THR A 67 AA 3 TYR A 28 ? GLY A 36 ? TYR A 10 GLY A 18 AA 4 GLY A 104 ? ASP A 110 ? GLY A 86 ASP A 92 AA 5 VAL A 136 ? ASN A 142 ? VAL A 118 ASN A 124 AA 6 SER A 167 ? GLU A 170 ? SER A 149 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 73 ? N VAL A 55 O LYS A 76 ? O LYS A 58 AA 2 3 N LYS A 79 ? N LYS A 61 O TYR A 28 ? O TYR A 10 AA 3 4 N VAL A 33 ? N VAL A 15 O GLY A 104 ? O GLY A 86 AA 4 5 N ALA A 105 ? N ALA A 87 O VAL A 136 ? O VAL A 118 AA 5 6 N LEU A 139 ? N LEU A 121 O SER A 167 ? O SER A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 202 ? 13 'BINDING SITE FOR RESIDUE PO4 A 202' AC2 Software A MG 301 ? 6 'BINDING SITE FOR RESIDUE MG A 301' AC3 Software A CL 401 ? 4 'BINDING SITE FOR RESIDUE CL A 401' AC4 Software A GDP 201 ? 27 'BINDING SITE FOR RESIDUE GDP A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 SER A 38 ? SER A 20 . ? 1_555 ? 2 AC1 13 GLY A 39 ? GLY A 21 . ? 1_555 ? 3 AC1 13 LYS A 42 ? LYS A 24 . ? 1_555 ? 4 AC1 13 SER A 60 ? SER A 42 . ? 1_555 ? 5 AC1 13 THR A 61 ? THR A 43 . ? 1_555 ? 6 AC1 13 ALA A 86 ? ALA A 68 . ? 1_555 ? 7 AC1 13 GLY A 87 ? GLY A 69 . ? 1_555 ? 8 AC1 13 GDP B . ? GDP A 201 . ? 1_555 ? 9 AC1 13 MG D . ? MG A 301 . ? 1_555 ? 10 AC1 13 HOH F . ? HOH A 2069 . ? 1_555 ? 11 AC1 13 HOH F . ? HOH A 2161 . ? 1_555 ? 12 AC1 13 HOH F . ? HOH A 2162 . ? 1_555 ? 13 AC1 13 HOH F . ? HOH A 2163 . ? 1_555 ? 14 AC2 6 SER A 43 ? SER A 25 . ? 1_555 ? 15 AC2 6 THR A 61 ? THR A 43 . ? 1_555 ? 16 AC2 6 GDP B . ? GDP A 201 . ? 1_555 ? 17 AC2 6 PO4 C . ? PO4 A 202 . ? 1_555 ? 18 AC2 6 HOH F . ? HOH A 2069 . ? 1_555 ? 19 AC2 6 HOH F . ? HOH A 2161 . ? 1_555 ? 20 AC3 4 ARG A 90 ? ARG A 72 . ? 1_555 ? 21 AC3 4 TYR A 91 ? TYR A 73 . ? 1_555 ? 22 AC3 4 HOH F . ? HOH A 2019 . ? 1_555 ? 23 AC3 4 HOH F . ? HOH A 2072 . ? 1_555 ? 24 AC4 27 GLY A 39 ? GLY A 21 . ? 1_555 ? 25 AC4 27 VAL A 40 ? VAL A 22 . ? 1_555 ? 26 AC4 27 GLY A 41 ? GLY A 23 . ? 1_555 ? 27 AC4 27 LYS A 42 ? LYS A 24 . ? 1_555 ? 28 AC4 27 SER A 43 ? SER A 25 . ? 1_555 ? 29 AC4 27 ASN A 44 ? ASN A 26 . ? 1_555 ? 30 AC4 27 PHE A 54 ? PHE A 36 . ? 1_555 ? 31 AC4 27 ASN A 55 ? ASN A 37 . ? 1_555 ? 32 AC4 27 LEU A 56 ? LEU A 38 . ? 1_555 ? 33 AC4 27 GLU A 57 ? GLU A 39 . ? 1_555 ? 34 AC4 27 SER A 58 ? SER A 40 . ? 1_555 ? 35 AC4 27 ASN A 142 ? ASN A 124 . ? 1_555 ? 36 AC4 27 LYS A 143 ? LYS A 125 . ? 1_555 ? 37 AC4 27 ASP A 145 ? ASP A 127 . ? 1_555 ? 38 AC4 27 LEU A 146 ? LEU A 128 . ? 1_555 ? 39 AC4 27 SER A 172 ? SER A 154 . ? 1_555 ? 40 AC4 27 ALA A 173 ? ALA A 155 . ? 1_555 ? 41 AC4 27 LEU A 174 ? LEU A 156 . ? 1_555 ? 42 AC4 27 PO4 C . ? PO4 A 202 . ? 1_555 ? 43 AC4 27 MG D . ? MG A 301 . ? 1_555 ? 44 AC4 27 HOH F . ? HOH A 2039 . ? 1_555 ? 45 AC4 27 HOH F . ? HOH A 2069 . ? 1_555 ? 46 AC4 27 HOH F . ? HOH A 2079 . ? 1_555 ? 47 AC4 27 HOH F . ? HOH A 2158 . ? 1_555 ? 48 AC4 27 HOH F . ? HOH A 2159 . ? 1_555 ? 49 AC4 27 HOH F . ? HOH A 2160 . ? 1_555 ? 50 AC4 27 HOH F . ? HOH A 2161 . ? 1_555 ? # _database_PDB_matrix.entry_id 1OIX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OIX _atom_sites.fract_transf_matrix[1][1] 0.013499 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008006 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? A . n A 1 2 ARG 2 -17 ? ? ? A . n A 1 3 GLY 3 -16 ? ? ? A . n A 1 4 SER 4 -15 ? ? ? A . n A 1 5 HIS 5 -14 ? ? ? A . n A 1 6 HIS 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 GLY 11 -8 ? ? ? A . n A 1 12 ILE 12 -7 ? ? ? A . n A 1 13 PRO 13 -6 ? ? ? A . n A 1 14 LEU 14 -5 ? ? ? A . n A 1 15 PRO 15 -4 ? ? ? A . n A 1 16 GLY 16 -3 ? ? ? A . n A 1 17 ARG 17 -2 ? ? ? A . n A 1 18 ALA 18 -1 ? ? ? A . n A 1 19 MET 19 1 ? ? ? A . n A 1 20 GLY 20 2 ? ? ? A . n A 1 21 THR 21 3 ? ? ? A . n A 1 22 ARG 22 4 ? ? ? A . n A 1 23 ASP 23 5 ? ? ? A . n A 1 24 ASP 24 6 6 ASP ASP A . n A 1 25 GLU 25 7 7 GLU GLU A . n A 1 26 TYR 26 8 8 TYR TYR A . n A 1 27 ASP 27 9 9 ASP ASP A . n A 1 28 TYR 28 10 10 TYR TYR A . n A 1 29 LEU 29 11 11 LEU LEU A . n A 1 30 PHE 30 12 12 PHE PHE A . n A 1 31 LYS 31 13 13 LYS LYS A . n A 1 32 VAL 32 14 14 VAL VAL A . n A 1 33 VAL 33 15 15 VAL VAL A . n A 1 34 LEU 34 16 16 LEU LEU A . n A 1 35 ILE 35 17 17 ILE ILE A . n A 1 36 GLY 36 18 18 GLY GLY A . n A 1 37 ASP 37 19 19 ASP ASP A . n A 1 38 SER 38 20 20 SER SER A . n A 1 39 GLY 39 21 21 GLY GLY A . n A 1 40 VAL 40 22 22 VAL VAL A . n A 1 41 GLY 41 23 23 GLY GLY A . n A 1 42 LYS 42 24 24 LYS LYS A . n A 1 43 SER 43 25 25 SER SER A . n A 1 44 ASN 44 26 26 ASN ASN A . n A 1 45 LEU 45 27 27 LEU LEU A . n A 1 46 LEU 46 28 28 LEU LEU A . n A 1 47 SER 47 29 29 SER SER A . n A 1 48 ARG 48 30 30 ARG ARG A . n A 1 49 PHE 49 31 31 PHE PHE A . n A 1 50 THR 50 32 32 THR THR A . n A 1 51 ARG 51 33 33 ARG ARG A . n A 1 52 ASN 52 34 34 ASN ASN A . n A 1 53 GLU 53 35 35 GLU GLU A . n A 1 54 PHE 54 36 36 PHE PHE A . n A 1 55 ASN 55 37 37 ASN ASN A . n A 1 56 LEU 56 38 38 LEU LEU A . n A 1 57 GLU 57 39 39 GLU GLU A . n A 1 58 SER 58 40 40 SER SER A . n A 1 59 LYS 59 41 41 LYS LYS A . n A 1 60 SER 60 42 42 SER SER A . n A 1 61 THR 61 43 43 THR THR A . n A 1 62 ILE 62 44 44 ILE ILE A . n A 1 63 GLY 63 45 45 GLY GLY A . n A 1 64 VAL 64 46 46 VAL VAL A . n A 1 65 GLU 65 47 47 GLU GLU A . n A 1 66 PHE 66 48 48 PHE PHE A . n A 1 67 ALA 67 49 49 ALA ALA A . n A 1 68 THR 68 50 50 THR THR A . n A 1 69 ARG 69 51 51 ARG ARG A . n A 1 70 SER 70 52 52 SER SER A . n A 1 71 ILE 71 53 53 ILE ILE A . n A 1 72 GLN 72 54 54 GLN GLN A . n A 1 73 VAL 73 55 55 VAL VAL A . n A 1 74 ASP 74 56 56 ASP ASP A . n A 1 75 GLY 75 57 57 GLY GLY A . n A 1 76 LYS 76 58 58 LYS LYS A . n A 1 77 THR 77 59 59 THR THR A . n A 1 78 ILE 78 60 60 ILE ILE A . n A 1 79 LYS 79 61 61 LYS LYS A . n A 1 80 ALA 80 62 62 ALA ALA A . n A 1 81 GLN 81 63 63 GLN GLN A . n A 1 82 ILE 82 64 64 ILE ILE A . n A 1 83 TRP 83 65 65 TRP TRP A . n A 1 84 ASP 84 66 66 ASP ASP A . n A 1 85 THR 85 67 67 THR THR A . n A 1 86 ALA 86 68 68 ALA ALA A . n A 1 87 GLY 87 69 69 GLY GLY A . n A 1 88 LEU 88 70 70 LEU LEU A . n A 1 89 GLU 89 71 71 GLU GLU A . n A 1 90 ARG 90 72 72 ARG ARG A . n A 1 91 TYR 91 73 73 TYR TYR A . n A 1 92 ARG 92 74 74 ARG ARG A . n A 1 93 ALA 93 75 75 ALA ALA A . n A 1 94 ILE 94 76 76 ILE ILE A . n A 1 95 THR 95 77 77 THR THR A . n A 1 96 SER 96 78 78 SER SER A . n A 1 97 ALA 97 79 79 ALA ALA A . n A 1 98 TYR 98 80 80 TYR TYR A . n A 1 99 TYR 99 81 81 TYR TYR A . n A 1 100 ARG 100 82 82 ARG ARG A . n A 1 101 GLY 101 83 83 GLY GLY A . n A 1 102 ALA 102 84 84 ALA ALA A . n A 1 103 VAL 103 85 85 VAL VAL A . n A 1 104 GLY 104 86 86 GLY GLY A . n A 1 105 ALA 105 87 87 ALA ALA A . n A 1 106 LEU 106 88 88 LEU LEU A . n A 1 107 LEU 107 89 89 LEU LEU A . n A 1 108 VAL 108 90 90 VAL VAL A . n A 1 109 TYR 109 91 91 TYR TYR A . n A 1 110 ASP 110 92 92 ASP ASP A . n A 1 111 ILE 111 93 93 ILE ILE A . n A 1 112 ALA 112 94 94 ALA ALA A . n A 1 113 LYS 113 95 95 LYS LYS A . n A 1 114 HIS 114 96 96 HIS HIS A . n A 1 115 LEU 115 97 97 LEU LEU A . n A 1 116 THR 116 98 98 THR THR A . n A 1 117 TYR 117 99 99 TYR TYR A . n A 1 118 GLU 118 100 100 GLU GLU A . n A 1 119 ASN 119 101 101 ASN ASN A . n A 1 120 VAL 120 102 102 VAL VAL A . n A 1 121 GLU 121 103 103 GLU GLU A . n A 1 122 ARG 122 104 104 ARG ARG A . n A 1 123 TRP 123 105 105 TRP TRP A . n A 1 124 LEU 124 106 106 LEU LEU A . n A 1 125 LYS 125 107 107 LYS LYS A . n A 1 126 GLU 126 108 108 GLU GLU A . n A 1 127 LEU 127 109 109 LEU LEU A . n A 1 128 ARG 128 110 110 ARG ARG A . n A 1 129 ASP 129 111 111 ASP ASP A . n A 1 130 HIS 130 112 112 HIS HIS A . n A 1 131 ALA 131 113 113 ALA ALA A . n A 1 132 ASP 132 114 114 ASP ASP A . n A 1 133 SER 133 115 115 SER SER A . n A 1 134 ASN 134 116 116 ASN ASN A . n A 1 135 ILE 135 117 117 ILE ILE A . n A 1 136 VAL 136 118 118 VAL VAL A . n A 1 137 ILE 137 119 119 ILE ILE A . n A 1 138 MET 138 120 120 MET MET A . n A 1 139 LEU 139 121 121 LEU LEU A . n A 1 140 VAL 140 122 122 VAL VAL A . n A 1 141 GLY 141 123 123 GLY GLY A . n A 1 142 ASN 142 124 124 ASN ASN A . n A 1 143 LYS 143 125 125 LYS LYS A . n A 1 144 SER 144 126 126 SER SER A . n A 1 145 ASP 145 127 127 ASP ASP A . n A 1 146 LEU 146 128 128 LEU LEU A . n A 1 147 ARG 147 129 129 ARG ARG A . n A 1 148 HIS 148 130 130 HIS HIS A . n A 1 149 LEU 149 131 131 LEU LEU A . n A 1 150 ARG 150 132 132 ARG ARG A . n A 1 151 ALA 151 133 133 ALA ALA A . n A 1 152 VAL 152 134 134 VAL VAL A . n A 1 153 PRO 153 135 135 PRO PRO A . n A 1 154 THR 154 136 136 THR THR A . n A 1 155 ASP 155 137 137 ASP ASP A . n A 1 156 GLU 156 138 138 GLU GLU A . n A 1 157 ALA 157 139 139 ALA ALA A . n A 1 158 ARG 158 140 140 ARG ARG A . n A 1 159 ALA 159 141 141 ALA ALA A . n A 1 160 PHE 160 142 142 PHE PHE A . n A 1 161 ALA 161 143 143 ALA ALA A . n A 1 162 GLU 162 144 144 GLU GLU A . n A 1 163 LYS 163 145 145 LYS LYS A . n A 1 164 ASN 164 146 146 ASN ASN A . n A 1 165 GLY 165 147 147 GLY GLY A . n A 1 166 LEU 166 148 148 LEU LEU A . n A 1 167 SER 167 149 149 SER SER A . n A 1 168 PHE 168 150 150 PHE PHE A . n A 1 169 ILE 169 151 151 ILE ILE A . n A 1 170 GLU 170 152 152 GLU GLU A . n A 1 171 THR 171 153 153 THR THR A . n A 1 172 SER 172 154 154 SER SER A . n A 1 173 ALA 173 155 155 ALA ALA A . n A 1 174 LEU 174 156 156 LEU LEU A . n A 1 175 ASP 175 157 157 ASP ASP A . n A 1 176 SER 176 158 158 SER SER A . n A 1 177 THR 177 159 159 THR THR A . n A 1 178 ASN 178 160 160 ASN ASN A . n A 1 179 VAL 179 161 161 VAL VAL A . n A 1 180 GLU 180 162 162 GLU GLU A . n A 1 181 ALA 181 163 163 ALA ALA A . n A 1 182 ALA 182 164 164 ALA ALA A . n A 1 183 PHE 183 165 165 PHE PHE A . n A 1 184 GLN 184 166 166 GLN GLN A . n A 1 185 THR 185 167 167 THR THR A . n A 1 186 ILE 186 168 168 ILE ILE A . n A 1 187 LEU 187 169 169 LEU LEU A . n A 1 188 THR 188 170 170 THR THR A . n A 1 189 GLU 189 171 171 GLU GLU A . n A 1 190 ILE 190 172 172 ILE ILE A . n A 1 191 TYR 191 173 173 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 201 201 GDP GDP A . C 3 PO4 1 202 202 PO4 PO4 A . D 4 MG 1 301 301 MG MG A . E 5 CL 1 401 401 CL CL A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . F 6 HOH 86 2086 2086 HOH HOH A . F 6 HOH 87 2087 2087 HOH HOH A . F 6 HOH 88 2088 2088 HOH HOH A . F 6 HOH 89 2089 2089 HOH HOH A . F 6 HOH 90 2090 2090 HOH HOH A . F 6 HOH 91 2091 2091 HOH HOH A . F 6 HOH 92 2092 2092 HOH HOH A . F 6 HOH 93 2093 2093 HOH HOH A . F 6 HOH 94 2094 2094 HOH HOH A . F 6 HOH 95 2095 2095 HOH HOH A . F 6 HOH 96 2096 2096 HOH HOH A . F 6 HOH 97 2097 2097 HOH HOH A . F 6 HOH 98 2098 2098 HOH HOH A . F 6 HOH 99 2099 2099 HOH HOH A . F 6 HOH 100 2100 2100 HOH HOH A . F 6 HOH 101 2101 2101 HOH HOH A . F 6 HOH 102 2102 2102 HOH HOH A . F 6 HOH 103 2103 2103 HOH HOH A . F 6 HOH 104 2104 2104 HOH HOH A . F 6 HOH 105 2105 2105 HOH HOH A . F 6 HOH 106 2106 2106 HOH HOH A . F 6 HOH 107 2107 2107 HOH HOH A . F 6 HOH 108 2108 2108 HOH HOH A . F 6 HOH 109 2109 2109 HOH HOH A . F 6 HOH 110 2110 2110 HOH HOH A . F 6 HOH 111 2111 2111 HOH HOH A . F 6 HOH 112 2112 2112 HOH HOH A . F 6 HOH 113 2113 2113 HOH HOH A . F 6 HOH 114 2114 2114 HOH HOH A . F 6 HOH 115 2115 2115 HOH HOH A . F 6 HOH 116 2116 2116 HOH HOH A . F 6 HOH 117 2117 2117 HOH HOH A . F 6 HOH 118 2118 2118 HOH HOH A . F 6 HOH 119 2119 2119 HOH HOH A . F 6 HOH 120 2120 2120 HOH HOH A . F 6 HOH 121 2121 2121 HOH HOH A . F 6 HOH 122 2122 2122 HOH HOH A . F 6 HOH 123 2123 2123 HOH HOH A . F 6 HOH 124 2124 2124 HOH HOH A . F 6 HOH 125 2125 2125 HOH HOH A . F 6 HOH 126 2126 2126 HOH HOH A . F 6 HOH 127 2127 2127 HOH HOH A . F 6 HOH 128 2128 2128 HOH HOH A . F 6 HOH 129 2129 2129 HOH HOH A . F 6 HOH 130 2130 2130 HOH HOH A . F 6 HOH 131 2131 2131 HOH HOH A . F 6 HOH 132 2132 2132 HOH HOH A . F 6 HOH 133 2133 2133 HOH HOH A . F 6 HOH 134 2134 2134 HOH HOH A . F 6 HOH 135 2135 2135 HOH HOH A . F 6 HOH 136 2136 2136 HOH HOH A . F 6 HOH 137 2137 2137 HOH HOH A . F 6 HOH 138 2138 2138 HOH HOH A . F 6 HOH 139 2139 2139 HOH HOH A . F 6 HOH 140 2140 2140 HOH HOH A . F 6 HOH 141 2141 2141 HOH HOH A . F 6 HOH 142 2142 2142 HOH HOH A . F 6 HOH 143 2143 2143 HOH HOH A . F 6 HOH 144 2144 2144 HOH HOH A . F 6 HOH 145 2145 2145 HOH HOH A . F 6 HOH 146 2146 2146 HOH HOH A . F 6 HOH 147 2147 2147 HOH HOH A . F 6 HOH 148 2148 2148 HOH HOH A . F 6 HOH 149 2149 2149 HOH HOH A . F 6 HOH 150 2150 2150 HOH HOH A . F 6 HOH 151 2151 2151 HOH HOH A . F 6 HOH 152 2152 2152 HOH HOH A . F 6 HOH 153 2153 2153 HOH HOH A . F 6 HOH 154 2154 2154 HOH HOH A . F 6 HOH 155 2155 2155 HOH HOH A . F 6 HOH 156 2156 2156 HOH HOH A . F 6 HOH 157 2157 2157 HOH HOH A . F 6 HOH 158 2158 2158 HOH HOH A . F 6 HOH 159 2159 2159 HOH HOH A . F 6 HOH 160 2160 2160 HOH HOH A . F 6 HOH 161 2161 2161 HOH HOH A . F 6 HOH 162 2162 2162 HOH HOH A . F 6 HOH 163 2163 2163 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2038 ? F HOH . 2 1 A HOH 2041 ? F HOH . 3 1 A HOH 2042 ? F HOH . 4 1 A HOH 2116 ? F HOH . 5 1 A HOH 2120 ? F HOH . 6 1 A HOH 2156 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 43 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 OG1 ? A THR 61 ? A THR 43 ? 1_555 75.4 ? 2 OG ? A SER 43 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O3B ? B GDP . ? A GDP 201 ? 1_555 90.8 ? 3 OG1 ? A THR 61 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O3B ? B GDP . ? A GDP 201 ? 1_555 166.1 ? 4 OG ? A SER 43 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O1 ? C PO4 . ? A PO4 202 ? 1_555 163.9 ? 5 OG1 ? A THR 61 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O1 ? C PO4 . ? A PO4 202 ? 1_555 89.1 ? 6 O3B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O1 ? C PO4 . ? A PO4 202 ? 1_555 104.8 ? 7 OG ? A SER 43 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2069 ? 1_555 88.7 ? 8 OG1 ? A THR 61 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2069 ? 1_555 87.5 ? 9 O3B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2069 ? 1_555 94.4 ? 10 O1 ? C PO4 . ? A PO4 202 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2069 ? 1_555 85.9 ? 11 OG ? A SER 43 ? A SER 25 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2161 ? 1_555 89.7 ? 12 OG1 ? A THR 61 ? A THR 43 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2161 ? 1_555 91.3 ? 13 O3B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2161 ? 1_555 86.5 ? 14 O1 ? C PO4 . ? A PO4 202 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2161 ? 1_555 95.3 ? 15 O ? F HOH . ? A HOH 2069 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 2161 ? 1_555 178.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-25 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 1OIX _pdbx_entry_details.compound_details 'ENGINEERED MUTATION GLN 70 LEU IN CHAIN A' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUES OF THE N-TERMINAL HIS6-TAG AND LINKER WERE DISORDERED AND NOT VISIBLE IN THE ELECTRON DENSITY MAP, AS WELL AS THE FIRST 5 RESIDUES OF RAB11A. ASP6 AND GLU7 WERE MODELLED AS ALANINES BECAUSE SIDE CHAINS WERE NOT VISIBLE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 82 ? ? O A HOH 2090 ? ? 1.97 2 1 O A HOH 2029 ? ? O A HOH 2031 ? ? 2.09 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2064 ? ? 1_555 O A HOH 2154 ? ? 16_555 2.05 2 1 O A HOH 2024 ? ? 1_555 O A HOH 2132 ? ? 7_555 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 82 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 82 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 82 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.22 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 7 ? ? 63.32 107.23 2 1 LYS A 125 ? ? 74.47 35.60 3 1 SER A 158 ? ? 74.63 -3.40 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2017 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.04 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 6 ? CG ? A ASP 24 CG 2 1 Y 1 A ASP 6 ? OD1 ? A ASP 24 OD1 3 1 Y 1 A ASP 6 ? OD2 ? A ASP 24 OD2 4 1 Y 1 A GLU 7 ? CG ? A GLU 25 CG 5 1 Y 1 A GLU 7 ? CD ? A GLU 25 CD 6 1 Y 1 A GLU 7 ? OE1 ? A GLU 25 OE1 7 1 Y 1 A GLU 7 ? OE2 ? A GLU 25 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -18 ? A MET 1 2 1 Y 1 A ARG -17 ? A ARG 2 3 1 Y 1 A GLY -16 ? A GLY 3 4 1 Y 1 A SER -15 ? A SER 4 5 1 Y 1 A HIS -14 ? A HIS 5 6 1 Y 1 A HIS -13 ? A HIS 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A GLY -8 ? A GLY 11 12 1 Y 1 A ILE -7 ? A ILE 12 13 1 Y 1 A PRO -6 ? A PRO 13 14 1 Y 1 A LEU -5 ? A LEU 14 15 1 Y 1 A PRO -4 ? A PRO 15 16 1 Y 1 A GLY -3 ? A GLY 16 17 1 Y 1 A ARG -2 ? A ARG 17 18 1 Y 1 A ALA -1 ? A ALA 18 19 1 Y 1 A MET 1 ? A MET 19 20 1 Y 1 A GLY 2 ? A GLY 20 21 1 Y 1 A THR 3 ? A THR 21 22 1 Y 1 A ARG 4 ? A ARG 22 23 1 Y 1 A ASP 5 ? A ASP 23 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 GDP PB P N N 75 GDP O1B O N N 76 GDP O2B O N N 77 GDP O3B O N N 78 GDP O3A O N N 79 GDP PA P N N 80 GDP O1A O N N 81 GDP O2A O N N 82 GDP "O5'" O N N 83 GDP "C5'" C N N 84 GDP "C4'" C N R 85 GDP "O4'" O N N 86 GDP "C3'" C N S 87 GDP "O3'" O N N 88 GDP "C2'" C N R 89 GDP "O2'" O N N 90 GDP "C1'" C N R 91 GDP N9 N Y N 92 GDP C8 C Y N 93 GDP N7 N Y N 94 GDP C5 C Y N 95 GDP C6 C N N 96 GDP O6 O N N 97 GDP N1 N N N 98 GDP C2 C N N 99 GDP N2 N N N 100 GDP N3 N N N 101 GDP C4 C Y N 102 GDP HOB2 H N N 103 GDP HOB3 H N N 104 GDP HOA2 H N N 105 GDP "H5'" H N N 106 GDP "H5''" H N N 107 GDP "H4'" H N N 108 GDP "H3'" H N N 109 GDP "HO3'" H N N 110 GDP "H2'" H N N 111 GDP "HO2'" H N N 112 GDP "H1'" H N N 113 GDP H8 H N N 114 GDP HN1 H N N 115 GDP HN21 H N N 116 GDP HN22 H N N 117 GLN N N N N 118 GLN CA C N S 119 GLN C C N N 120 GLN O O N N 121 GLN CB C N N 122 GLN CG C N N 123 GLN CD C N N 124 GLN OE1 O N N 125 GLN NE2 N N N 126 GLN OXT O N N 127 GLN H H N N 128 GLN H2 H N N 129 GLN HA H N N 130 GLN HB2 H N N 131 GLN HB3 H N N 132 GLN HG2 H N N 133 GLN HG3 H N N 134 GLN HE21 H N N 135 GLN HE22 H N N 136 GLN HXT H N N 137 GLU N N N N 138 GLU CA C N S 139 GLU C C N N 140 GLU O O N N 141 GLU CB C N N 142 GLU CG C N N 143 GLU CD C N N 144 GLU OE1 O N N 145 GLU OE2 O N N 146 GLU OXT O N N 147 GLU H H N N 148 GLU H2 H N N 149 GLU HA H N N 150 GLU HB2 H N N 151 GLU HB3 H N N 152 GLU HG2 H N N 153 GLU HG3 H N N 154 GLU HE2 H N N 155 GLU HXT H N N 156 GLY N N N N 157 GLY CA C N N 158 GLY C C N N 159 GLY O O N N 160 GLY OXT O N N 161 GLY H H N N 162 GLY H2 H N N 163 GLY HA2 H N N 164 GLY HA3 H N N 165 GLY HXT H N N 166 HIS N N N N 167 HIS CA C N S 168 HIS C C N N 169 HIS O O N N 170 HIS CB C N N 171 HIS CG C Y N 172 HIS ND1 N Y N 173 HIS CD2 C Y N 174 HIS CE1 C Y N 175 HIS NE2 N Y N 176 HIS OXT O N N 177 HIS H H N N 178 HIS H2 H N N 179 HIS HA H N N 180 HIS HB2 H N N 181 HIS HB3 H N N 182 HIS HD1 H N N 183 HIS HD2 H N N 184 HIS HE1 H N N 185 HIS HE2 H N N 186 HIS HXT H N N 187 HOH O O N N 188 HOH H1 H N N 189 HOH H2 H N N 190 ILE N N N N 191 ILE CA C N S 192 ILE C C N N 193 ILE O O N N 194 ILE CB C N S 195 ILE CG1 C N N 196 ILE CG2 C N N 197 ILE CD1 C N N 198 ILE OXT O N N 199 ILE H H N N 200 ILE H2 H N N 201 ILE HA H N N 202 ILE HB H N N 203 ILE HG12 H N N 204 ILE HG13 H N N 205 ILE HG21 H N N 206 ILE HG22 H N N 207 ILE HG23 H N N 208 ILE HD11 H N N 209 ILE HD12 H N N 210 ILE HD13 H N N 211 ILE HXT H N N 212 LEU N N N N 213 LEU CA C N S 214 LEU C C N N 215 LEU O O N N 216 LEU CB C N N 217 LEU CG C N N 218 LEU CD1 C N N 219 LEU CD2 C N N 220 LEU OXT O N N 221 LEU H H N N 222 LEU H2 H N N 223 LEU HA H N N 224 LEU HB2 H N N 225 LEU HB3 H N N 226 LEU HG H N N 227 LEU HD11 H N N 228 LEU HD12 H N N 229 LEU HD13 H N N 230 LEU HD21 H N N 231 LEU HD22 H N N 232 LEU HD23 H N N 233 LEU HXT H N N 234 LYS N N N N 235 LYS CA C N S 236 LYS C C N N 237 LYS O O N N 238 LYS CB C N N 239 LYS CG C N N 240 LYS CD C N N 241 LYS CE C N N 242 LYS NZ N N N 243 LYS OXT O N N 244 LYS H H N N 245 LYS H2 H N N 246 LYS HA H N N 247 LYS HB2 H N N 248 LYS HB3 H N N 249 LYS HG2 H N N 250 LYS HG3 H N N 251 LYS HD2 H N N 252 LYS HD3 H N N 253 LYS HE2 H N N 254 LYS HE3 H N N 255 LYS HZ1 H N N 256 LYS HZ2 H N N 257 LYS HZ3 H N N 258 LYS HXT H N N 259 MET N N N N 260 MET CA C N S 261 MET C C N N 262 MET O O N N 263 MET CB C N N 264 MET CG C N N 265 MET SD S N N 266 MET CE C N N 267 MET OXT O N N 268 MET H H N N 269 MET H2 H N N 270 MET HA H N N 271 MET HB2 H N N 272 MET HB3 H N N 273 MET HG2 H N N 274 MET HG3 H N N 275 MET HE1 H N N 276 MET HE2 H N N 277 MET HE3 H N N 278 MET HXT H N N 279 MG MG MG N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PO4 P P N N 304 PO4 O1 O N N 305 PO4 O2 O N N 306 PO4 O3 O N N 307 PO4 O4 O N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PO4 P O1 doub N N 292 PO4 P O2 sing N N 293 PO4 P O3 sing N N 294 PO4 P O4 sing N N 295 PRO N CA sing N N 296 PRO N CD sing N N 297 PRO N H sing N N 298 PRO CA C sing N N 299 PRO CA CB sing N N 300 PRO CA HA sing N N 301 PRO C O doub N N 302 PRO C OXT sing N N 303 PRO CB CG sing N N 304 PRO CB HB2 sing N N 305 PRO CB HB3 sing N N 306 PRO CG CD sing N N 307 PRO CG HG2 sing N N 308 PRO CG HG3 sing N N 309 PRO CD HD2 sing N N 310 PRO CD HD3 sing N N 311 PRO OXT HXT sing N N 312 SER N CA sing N N 313 SER N H sing N N 314 SER N H2 sing N N 315 SER CA C sing N N 316 SER CA CB sing N N 317 SER CA HA sing N N 318 SER C O doub N N 319 SER C OXT sing N N 320 SER CB OG sing N N 321 SER CB HB2 sing N N 322 SER CB HB3 sing N N 323 SER OG HG sing N N 324 SER OXT HXT sing N N 325 THR N CA sing N N 326 THR N H sing N N 327 THR N H2 sing N N 328 THR CA C sing N N 329 THR CA CB sing N N 330 THR CA HA sing N N 331 THR C O doub N N 332 THR C OXT sing N N 333 THR CB OG1 sing N N 334 THR CB CG2 sing N N 335 THR CB HB sing N N 336 THR OG1 HG1 sing N N 337 THR CG2 HG21 sing N N 338 THR CG2 HG22 sing N N 339 THR CG2 HG23 sing N N 340 THR OXT HXT sing N N 341 TRP N CA sing N N 342 TRP N H sing N N 343 TRP N H2 sing N N 344 TRP CA C sing N N 345 TRP CA CB sing N N 346 TRP CA HA sing N N 347 TRP C O doub N N 348 TRP C OXT sing N N 349 TRP CB CG sing N N 350 TRP CB HB2 sing N N 351 TRP CB HB3 sing N N 352 TRP CG CD1 doub Y N 353 TRP CG CD2 sing Y N 354 TRP CD1 NE1 sing Y N 355 TRP CD1 HD1 sing N N 356 TRP CD2 CE2 doub Y N 357 TRP CD2 CE3 sing Y N 358 TRP NE1 CE2 sing Y N 359 TRP NE1 HE1 sing N N 360 TRP CE2 CZ2 sing Y N 361 TRP CE3 CZ3 doub Y N 362 TRP CE3 HE3 sing N N 363 TRP CZ2 CH2 doub Y N 364 TRP CZ2 HZ2 sing N N 365 TRP CZ3 CH2 sing Y N 366 TRP CZ3 HZ3 sing N N 367 TRP CH2 HH2 sing N N 368 TRP OXT HXT sing N N 369 TYR N CA sing N N 370 TYR N H sing N N 371 TYR N H2 sing N N 372 TYR CA C sing N N 373 TYR CA CB sing N N 374 TYR CA HA sing N N 375 TYR C O doub N N 376 TYR C OXT sing N N 377 TYR CB CG sing N N 378 TYR CB HB2 sing N N 379 TYR CB HB3 sing N N 380 TYR CG CD1 doub Y N 381 TYR CG CD2 sing Y N 382 TYR CD1 CE1 sing Y N 383 TYR CD1 HD1 sing N N 384 TYR CD2 CE2 doub Y N 385 TYR CD2 HD2 sing N N 386 TYR CE1 CZ doub Y N 387 TYR CE1 HE1 sing N N 388 TYR CE2 CZ sing Y N 389 TYR CE2 HE2 sing N N 390 TYR CZ OH sing N N 391 TYR OH HH sing N N 392 TYR OXT HXT sing N N 393 VAL N CA sing N N 394 VAL N H sing N N 395 VAL N H2 sing N N 396 VAL CA C sing N N 397 VAL CA CB sing N N 398 VAL CA HA sing N N 399 VAL C O doub N N 400 VAL C OXT sing N N 401 VAL CB CG1 sing N N 402 VAL CB CG2 sing N N 403 VAL CB HB sing N N 404 VAL CG1 HG11 sing N N 405 VAL CG1 HG12 sing N N 406 VAL CG1 HG13 sing N N 407 VAL CG2 HG21 sing N N 408 VAL CG2 HG22 sing N N 409 VAL CG2 HG23 sing N N 410 VAL OXT HXT sing N N 411 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'PHOSPHATE ION' PO4 4 'MAGNESIUM ION' MG 5 'CHLORIDE ION' CL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1OIW _pdbx_initial_refinement_model.details 'PDB ENTRY 1OIW' #