HEADER PROTEIN TRANSPORT, SIGNALING PROTEIN 25-FEB-03 1OM9 TITLE STRUCTURE OF THE GGA1-APPENDAGE IN COMPLEX WITH THE P56 BINDING TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: APPENDAGE DOMAIN, RESIDUES 494-639 OF SWS Q9UJY5; COMPND 5 SYNONYM: GGA1-APPENDAGE DOMAIN; ADP-RIBOSYLATION FACTOR BINDING COMPND 6 PROTEIN 1; GAMMA-ADAPTIN RELATED PROTEIN 1; GOLGI-LOCALIZED, GAMMA COMPND 7 EAR-CONTAINING, ARF-BINDING PROTEIN 1; GGA1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 15-MER PEPTIDE FRAGMENT OF P56; COMPND 11 CHAIN: P, Q; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GGA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: IPTG INDUCIBLE T7 RNA POLYMERASE SOURCE 10 PROMOTER; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMWH6172; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN HOMO SAPIENS KEYWDS BETA SANDWICH, BETA AUGMENTATION, GGA, ADAPTIN, CLATHRIN ADAPTOR, KEYWDS 2 PROTEIN TRANSPORT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.M.COLLINS,G.J.K.PRAEFCKE,M.S.ROBINSON,D.J.OWEN REVDAT 3 16-AUG-23 1OM9 1 SEQADV REVDAT 2 24-FEB-09 1OM9 1 VERSN REVDAT 1 29-JUL-03 1OM9 0 JRNL AUTH B.M.COLLINS,G.J.K.PRAEFCKE,M.S.ROBINSON,D.J.OWEN JRNL TITL STRUCTURAL BASIS FOR BINDING OF ACCESSORY PROTEINS BY THE JRNL TITL 2 APPENDAGE DOMAIN OF GGAS JRNL REF NAT.STRUCT.BIOL. V. 10 607 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12858163 JRNL DOI 10.1038/NSB955 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.784 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2444 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2258 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3337 ; 1.815 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5284 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 7.587 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 362 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2411 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1569 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.066 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.022 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2534 ; 1.919 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 903 ; 2.370 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 803 ; 4.190 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 498 A 639 2 REMARK 3 1 B 498 B 639 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 828 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1357 ; 0.47 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 828 ; 0.08 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1357 ; 0.38 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : P Q REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 P 4 P 13 2 REMARK 3 1 Q 4 Q 13 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 57 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 B (A): 71 ; 0.22 ; 0.50 REMARK 3 TIGHT THERMAL 2 B (A**2): 57 ; 0.12 ; 0.50 REMARK 3 MEDIUM THERMAL 2 B (A**2): 71 ; 0.42 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1NA8 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, 100 MM MGCL2 REMARK 280 AND 35% PEG 400, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.33600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.67200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.67200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.33600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTEIN CHAIN A IS PAIRED WITH PEPTIDE CHAIN P REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 MET A 493 REMARK 465 GLU A 494 REMARK 465 LEU A 495 REMARK 465 SER A 496 REMARK 465 LEU A 497 REMARK 465 ASP P 1 REMARK 465 ASP P 2 REMARK 465 PHE P 14 REMARK 465 ASP P 15 REMARK 465 MET B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 MET B 493 REMARK 465 GLU B 494 REMARK 465 LEU B 495 REMARK 465 SER B 496 REMARK 465 LEU B 497 REMARK 465 ASP Q 1 REMARK 465 ASP Q 2 REMARK 465 ASP Q 3 REMARK 465 PHE Q 14 REMARK 465 ASP Q 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 550 O HOH A 39 2.15 REMARK 500 O PRO B 632 OG1 THR B 635 2.18 REMARK 500 O HOH A 6 O HOH A 32 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 556 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 618 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 618 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 566 -49.80 -26.47 REMARK 500 LYS A 603 36.49 71.24 REMARK 500 SER A 638 36.01 -94.36 REMARK 500 GLU P 12 109.62 -50.45 REMARK 500 LYS B 566 -45.81 -27.44 REMARK 500 SER B 638 35.85 -92.79 REMARK 500 GLU Q 12 101.13 -51.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 498 SER A 499 147.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NA8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UNLIGANDED GGA1-APPENDAGE DOMAIN REMARK 900 RELATED ID: 1GYU RELATED DB: PDB REMARK 900 STRUCTURE OF THE UNLIGANDED GAMMA-APPENDAGE DOMAIN REMARK 900 RELATED ID: 1IU1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UNLIGANDED GAMMA-APPENDAGE DOMAIN DBREF 1OM9 A 494 639 UNP Q9UJY5 GGA1_HUMAN 494 639 DBREF 1OM9 B 494 639 UNP Q9UJY5 GGA1_HUMAN 494 639 DBREF 1OM9 P 1 15 PDB 1OM9 1OM9 1 15 DBREF 1OM9 Q 1 15 PDB 1OM9 1OM9 1 15 SEQADV 1OM9 MET A 486 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 487 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 488 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 489 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 490 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 491 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS A 492 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 MET A 493 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 MET B 486 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 487 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 488 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 489 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 490 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 491 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 HIS B 492 UNP Q9UJY5 EXPRESSION TAG SEQADV 1OM9 MET B 493 UNP Q9UJY5 EXPRESSION TAG SEQRES 1 A 154 MET HIS HIS HIS HIS HIS HIS MET GLU LEU SER LEU ALA SEQRES 2 A 154 SER ILE THR VAL PRO LEU GLU SER ILE LYS PRO SER ASN SEQRES 3 A 154 ILE LEU PRO VAL THR VAL TYR ASP GLN HIS GLY PHE ARG SEQRES 4 A 154 ILE LEU PHE HIS PHE ALA ARG ASP PRO LEU PRO GLY ARG SEQRES 5 A 154 SER ASP VAL LEU VAL VAL VAL VAL SER MET LEU SER THR SEQRES 6 A 154 ALA PRO GLN PRO ILE ARG ASN ILE VAL PHE GLN SER ALA SEQRES 7 A 154 VAL PRO LYS VAL MET LYS VAL LYS LEU GLN PRO PRO SER SEQRES 8 A 154 GLY THR GLU LEU PRO ALA PHE ASN PRO ILE VAL HIS PRO SEQRES 9 A 154 SER ALA ILE THR GLN VAL LEU LEU LEU ALA ASN PRO GLN SEQRES 10 A 154 LYS GLU LYS VAL ARG LEU ARG TYR LYS LEU THR PHE THR SEQRES 11 A 154 MET GLY ASP GLN THR TYR ASN GLU MET GLY ASP VAL ASP SEQRES 12 A 154 GLN PHE PRO PRO PRO GLU THR TRP GLY SER LEU SEQRES 1 P 15 ASP ASP ASP ASP PHE GLY GLY PHE GLU ALA ALA GLU THR SEQRES 2 P 15 PHE ASP SEQRES 1 B 154 MET HIS HIS HIS HIS HIS HIS MET GLU LEU SER LEU ALA SEQRES 2 B 154 SER ILE THR VAL PRO LEU GLU SER ILE LYS PRO SER ASN SEQRES 3 B 154 ILE LEU PRO VAL THR VAL TYR ASP GLN HIS GLY PHE ARG SEQRES 4 B 154 ILE LEU PHE HIS PHE ALA ARG ASP PRO LEU PRO GLY ARG SEQRES 5 B 154 SER ASP VAL LEU VAL VAL VAL VAL SER MET LEU SER THR SEQRES 6 B 154 ALA PRO GLN PRO ILE ARG ASN ILE VAL PHE GLN SER ALA SEQRES 7 B 154 VAL PRO LYS VAL MET LYS VAL LYS LEU GLN PRO PRO SER SEQRES 8 B 154 GLY THR GLU LEU PRO ALA PHE ASN PRO ILE VAL HIS PRO SEQRES 9 B 154 SER ALA ILE THR GLN VAL LEU LEU LEU ALA ASN PRO GLN SEQRES 10 B 154 LYS GLU LYS VAL ARG LEU ARG TYR LYS LEU THR PHE THR SEQRES 11 B 154 MET GLY ASP GLN THR TYR ASN GLU MET GLY ASP VAL ASP SEQRES 12 B 154 GLN PHE PRO PRO PRO GLU THR TRP GLY SER LEU SEQRES 1 Q 15 ASP ASP ASP ASP PHE GLY GLY PHE GLU ALA ALA GLU THR SEQRES 2 Q 15 PHE ASP FORMUL 5 HOH *66(H2 O) HELIX 1 1 PRO A 503 ILE A 507 5 5 HELIX 2 2 PRO B 503 ILE B 507 5 5 SHEET 1 A 5 VAL A 515 GLN A 520 0 SHEET 2 A 5 PHE A 523 ARG A 531 -1 O PHE A 523 N GLN A 520 SHEET 3 A 5 VAL A 540 SER A 549 -1 O VAL A 544 N HIS A 528 SHEET 4 A 5 ALA A 591 ALA A 599 -1 O LEU A 596 N VAL A 543 SHEET 5 A 5 LYS A 569 LEU A 572 -1 N LYS A 571 O LEU A 597 SHEET 1 B 3 ILE A 555 ALA A 563 0 SHEET 2 B 3 LEU A 608 MET A 616 -1 O THR A 615 N ARG A 556 SHEET 3 B 3 GLN A 619 VAL A 627 -1 O GLU A 623 N LEU A 612 SHEET 1 C 5 VAL B 515 GLN B 520 0 SHEET 2 C 5 PHE B 523 ARG B 531 -1 O PHE B 523 N GLN B 520 SHEET 3 C 5 VAL B 540 SER B 549 -1 O VAL B 544 N HIS B 528 SHEET 4 C 5 ALA B 591 ALA B 599 -1 O LEU B 596 N VAL B 543 SHEET 5 C 5 LYS B 569 PRO B 575 -1 N LYS B 571 O LEU B 597 SHEET 1 D 3 ILE B 555 ALA B 563 0 SHEET 2 D 3 LEU B 608 MET B 616 -1 O THR B 615 N ARG B 556 SHEET 3 D 3 GLN B 619 VAL B 627 -1 O GLU B 623 N LEU B 612 CRYST1 61.414 61.414 145.008 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016283 0.009401 0.000000 0.00000 SCALE2 0.000000 0.018802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006896 0.00000