HEADER MEMBRANE PROTEIN 03-APR-03 1OY8 TITLE STRUCTURAL BASIS OF MULTIPLE DRUG BINDING CAPACITY OF THE ACRB TITLE 2 MULTIDRUG EFFLUX PUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRIFLAVINE RESISTANCE PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ACRB OR ACRE OR B0462; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.W.YU,G.MCDERMOTT,H.I.ZGURSKAYA,H.NIKAIDO,D.E.KOSHLAND JR. REVDAT 4 14-FEB-24 1OY8 1 REMARK REVDAT 3 13-JUL-11 1OY8 1 VERSN REVDAT 2 24-FEB-09 1OY8 1 VERSN REVDAT 1 13-MAY-03 1OY8 0 JRNL AUTH E.W.YU,G.MCDERMOTT,H.I.ZGURSKAYA,H.NIKAIDO,D.E.KOSHLAND JRNL TITL STRUCTURAL BASIS OF MULTIPLE DRUG-BINDING CAPACITY OF THE JRNL TITL 2 ACRB MULTIDRUG EFFLUX PUMP. JRNL REF SCIENCE V. 300 976 2003 JRNL REFN ISSN 0036-8075 JRNL PMID 12738864 JRNL DOI 10.1126/SCIENCE.1083137 REMARK 2 REMARK 2 RESOLUTION. 3.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24586 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.80016 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 172.87133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.40000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.80016 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 172.87133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.40000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.80016 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 172.87133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.40000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.80016 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 172.87133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.40000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.80016 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 172.87133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.40000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.80016 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 172.87133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.60032 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 345.74267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.60032 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 345.74267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.60032 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 345.74267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.60032 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 345.74267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.60032 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 345.74267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.60032 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 345.74267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 114380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 72.40000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 125.40048 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -72.40000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 125.40048 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 499 REMARK 465 ILE A 500 REMARK 465 ALA A 501 REMARK 465 LYS A 502 REMARK 465 GLY A 503 REMARK 465 ASP A 504 REMARK 465 HIS A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 GLY A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 GLY A 511 REMARK 465 PHE A 512 REMARK 465 ASP A 711 REMARK 465 THR A 860 REMARK 465 GLY A 861 REMARK 465 MET A 862 REMARK 465 SER A 863 REMARK 465 TYR A 864 REMARK 465 GLN A 865 REMARK 465 GLU A 866 REMARK 465 ARG A 867 REMARK 465 LEU A 868 REMARK 465 ASN A 1037 REMARK 465 GLU A 1038 REMARK 465 ASP A 1039 REMARK 465 ILE A 1040 REMARK 465 GLU A 1041 REMARK 465 HIS A 1042 REMARK 465 SER A 1043 REMARK 465 HIS A 1044 REMARK 465 THR A 1045 REMARK 465 VAL A 1046 REMARK 465 ASP A 1047 REMARK 465 HIS A 1048 REMARK 465 HIS A 1049 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A1032 CZ ARG A1032 NH1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 25 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP A 407 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 723 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 858 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A1032 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 -77.49 -56.06 REMARK 500 LYS A 29 -4.18 -146.20 REMARK 500 GLN A 34 -114.66 -68.91 REMARK 500 VAL A 61 -50.71 -121.79 REMARK 500 ASN A 68 42.85 -97.65 REMARK 500 ASN A 74 119.43 65.29 REMARK 500 LEU A 75 138.95 -171.99 REMARK 500 GLN A 112 23.68 -72.37 REMARK 500 SER A 133 82.82 -161.13 REMARK 500 SER A 134 58.50 -66.54 REMARK 500 LEU A 137 -56.59 -132.69 REMARK 500 THR A 145 -57.97 -121.85 REMARK 500 ASP A 146 -80.93 -80.04 REMARK 500 GLN A 151 42.64 -74.53 REMARK 500 GLU A 152 -32.70 -152.81 REMARK 500 ASN A 161 -33.25 -152.17 REMARK 500 SER A 170 73.46 41.60 REMARK 500 LYS A 195 2.18 -67.95 REMARK 500 GLN A 197 66.76 69.51 REMARK 500 ALA A 209 -42.37 -133.74 REMARK 500 LYS A 226 101.15 -53.94 REMARK 500 ALA A 236 -128.28 -109.63 REMARK 500 LYS A 248 39.21 -99.99 REMARK 500 GLN A 255 -57.14 -9.49 REMARK 500 THR A 295 96.65 -59.04 REMARK 500 ALA A 299 -105.66 53.85 REMARK 500 ALA A 305 89.46 -68.11 REMARK 500 ARG A 307 -20.43 127.84 REMARK 500 ALA A 308 169.39 63.17 REMARK 500 LEU A 310 13.81 -168.96 REMARK 500 TYR A 327 90.68 14.04 REMARK 500 THR A 330 -63.36 -29.91 REMARK 500 LEU A 366 -38.57 -142.47 REMARK 500 LEU A 404 1.38 -68.65 REMARK 500 ALA A 421 -39.60 -132.44 REMARK 500 PRO A 427 171.38 -58.50 REMARK 500 PHE A 459 -163.37 11.82 REMARK 500 THR A 463 32.63 -74.61 REMARK 500 LEU A 497 -48.49 -133.68 REMARK 500 GLU A 521 -73.96 -63.26 REMARK 500 HIS A 525 -127.08 -84.62 REMARK 500 HIS A 526 -61.50 -6.64 REMARK 500 THR A 538 -46.83 -153.30 REMARK 500 PHE A 563 -70.51 -97.36 REMARK 500 PRO A 579 -170.98 -64.00 REMARK 500 GLU A 602 47.67 -150.16 REMARK 500 GLN A 657 -70.40 -102.66 REMARK 500 ALA A 661 -147.66 -112.20 REMARK 500 PHE A 664 -162.36 -114.00 REMARK 500 ALA A 665 138.51 -172.62 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1OY8 A 1 1049 UNP P31224 ACRB_ECOLI 1 1049 SEQRES 1 A 1049 MET PRO ASN PHE PHE ILE ASP ARG PRO ILE PHE ALA TRP SEQRES 2 A 1049 VAL ILE ALA ILE ILE ILE MET LEU ALA GLY GLY LEU ALA SEQRES 3 A 1049 ILE LEU LYS LEU PRO VAL ALA GLN TYR PRO THR ILE ALA SEQRES 4 A 1049 PRO PRO ALA VAL THR ILE SER ALA SER TYR PRO GLY ALA SEQRES 5 A 1049 ASP ALA LYS THR VAL GLN ASP THR VAL THR GLN VAL ILE SEQRES 6 A 1049 GLU GLN ASN MET ASN GLY ILE ASP ASN LEU MET TYR MET SEQRES 7 A 1049 SER SER ASN SER ASP SER THR GLY THR VAL GLN ILE THR SEQRES 8 A 1049 LEU THR PHE GLU SER GLY THR ASP ALA ASP ILE ALA GLN SEQRES 9 A 1049 VAL GLN VAL GLN ASN LYS LEU GLN LEU ALA MET PRO LEU SEQRES 10 A 1049 LEU PRO GLN GLU VAL GLN GLN GLN GLY VAL SER VAL GLU SEQRES 11 A 1049 LYS SER SER SER SER PHE LEU MET VAL VAL GLY VAL ILE SEQRES 12 A 1049 ASN THR ASP GLY THR MET THR GLN GLU ASP ILE SER ASP SEQRES 13 A 1049 TYR VAL ALA ALA ASN MET LYS ASP ALA ILE SER ARG THR SEQRES 14 A 1049 SER GLY VAL GLY ASP VAL GLN LEU PHE GLY SER GLN TYR SEQRES 15 A 1049 ALA MET ARG ILE TRP MET ASN PRO ASN GLU LEU ASN LYS SEQRES 16 A 1049 PHE GLN LEU THR PRO VAL ASP VAL ILE THR ALA ILE LYS SEQRES 17 A 1049 ALA GLN ASN ALA GLN VAL ALA ALA GLY GLN LEU GLY GLY SEQRES 18 A 1049 THR PRO PRO VAL LYS GLY GLN GLN LEU ASN ALA SER ILE SEQRES 19 A 1049 ILE ALA GLN THR ARG LEU THR SER THR GLU GLU PHE GLY SEQRES 20 A 1049 LYS ILE LEU LEU LYS VAL ASN GLN ASP GLY SER ARG VAL SEQRES 21 A 1049 LEU LEU ARG ASP VAL ALA LYS ILE GLU LEU GLY GLY GLU SEQRES 22 A 1049 ASN TYR ASP ILE ILE ALA GLU PHE ASN GLY GLN PRO ALA SEQRES 23 A 1049 SER GLY LEU GLY ILE LYS LEU ALA THR GLY ALA ASN ALA SEQRES 24 A 1049 LEU ASP THR ALA ALA ALA ILE ARG ALA GLU LEU ALA LYS SEQRES 25 A 1049 MET GLU PRO PHE PHE PRO SER GLY LEU LYS ILE VAL TYR SEQRES 26 A 1049 PRO TYR ASP THR THR PRO PHE VAL LYS ILE SER ILE HIS SEQRES 27 A 1049 GLU VAL VAL LYS THR LEU VAL GLU ALA ILE ILE LEU VAL SEQRES 28 A 1049 PHE LEU VAL MET TYR LEU PHE LEU GLN ASN PHE ARG ALA SEQRES 29 A 1049 THR LEU ILE PRO THR ILE ALA VAL PRO VAL VAL LEU LEU SEQRES 30 A 1049 GLY THR PHE ALA VAL LEU ALA ALA PHE GLY PHE SER ILE SEQRES 31 A 1049 ASN THR LEU THR MET PHE GLY MET VAL LEU ALA ILE GLY SEQRES 32 A 1049 LEU LEU VAL ASP ASP ALA ILE VAL VAL VAL GLU ASN VAL SEQRES 33 A 1049 GLU ARG VAL MET ALA GLU GLU GLY LEU PRO PRO LYS GLU SEQRES 34 A 1049 ALA THR ARG LYS SER MET GLY GLN ILE GLN GLY ALA LEU SEQRES 35 A 1049 VAL GLY ILE ALA MET VAL LEU SER ALA VAL PHE VAL PRO SEQRES 36 A 1049 MET ALA PHE PHE GLY GLY SER THR GLY ALA ILE TYR ARG SEQRES 37 A 1049 GLN PHE SER ILE THR ILE VAL SER ALA MET ALA LEU SER SEQRES 38 A 1049 VAL LEU VAL ALA LEU ILE LEU THR PRO ALA LEU CYS ALA SEQRES 39 A 1049 THR MET LEU LYS PRO ILE ALA LYS GLY ASP HIS GLY GLU SEQRES 40 A 1049 GLY LYS LYS GLY PHE PHE GLY TRP PHE ASN ARG MET PHE SEQRES 41 A 1049 GLU LYS SER THR HIS HIS TYR THR ASP SER VAL GLY GLY SEQRES 42 A 1049 ILE LEU ARG SER THR GLY ARG TYR LEU VAL LEU TYR LEU SEQRES 43 A 1049 ILE ILE VAL VAL GLY MET ALA TYR LEU PHE VAL ARG LEU SEQRES 44 A 1049 PRO SER SER PHE LEU PRO ASP GLU ASP GLN GLY VAL PHE SEQRES 45 A 1049 MET THR MET VAL GLN LEU PRO ALA GLY ALA THR GLN GLU SEQRES 46 A 1049 ARG THR GLN LYS VAL LEU ASN GLU VAL THR HIS TYR TYR SEQRES 47 A 1049 LEU THR LYS GLU LYS ASN ASN VAL GLU SER VAL PHE ALA SEQRES 48 A 1049 VAL ASN GLY PHE GLY PHE ALA GLY ARG GLY GLN ASN THR SEQRES 49 A 1049 GLY ILE ALA PHE VAL SER LEU LYS ASP TRP ALA ASP ARG SEQRES 50 A 1049 PRO GLY GLU GLU ASN LYS VAL GLU ALA ILE THR MET ARG SEQRES 51 A 1049 ALA THR ARG ALA PHE SER GLN ILE LYS ASP ALA MET VAL SEQRES 52 A 1049 PHE ALA PHE ASN LEU PRO ALA ILE VAL GLU LEU GLY THR SEQRES 53 A 1049 ALA THR GLY PHE ASP PHE GLU LEU ILE ASP GLN ALA GLY SEQRES 54 A 1049 LEU GLY HIS GLU LYS LEU THR GLN ALA ARG ASN GLN LEU SEQRES 55 A 1049 LEU ALA GLU ALA ALA LYS HIS PRO ASP MET LEU THR SER SEQRES 56 A 1049 VAL ARG PRO ASN GLY LEU GLU ASP THR PRO GLN PHE LYS SEQRES 57 A 1049 ILE ASP ILE ASP GLN GLU LYS ALA GLN ALA LEU GLY VAL SEQRES 58 A 1049 SER ILE ASN ASP ILE ASN THR THR LEU GLY ALA ALA TRP SEQRES 59 A 1049 GLY GLY SER TYR VAL ASN ASP PHE ILE ASP ARG GLY ARG SEQRES 60 A 1049 VAL LYS LYS VAL TYR VAL MET SER GLU ALA LYS TYR ARG SEQRES 61 A 1049 MET LEU PRO ASP ASP ILE GLY ASP TRP TYR VAL ARG ALA SEQRES 62 A 1049 ALA ASP GLY GLN MET VAL PRO PHE SER ALA PHE SER SER SEQRES 63 A 1049 SER ARG TRP GLU TYR GLY SER PRO ARG LEU GLU ARG TYR SEQRES 64 A 1049 ASN GLY LEU PRO SER MET GLU ILE LEU GLY GLN ALA ALA SEQRES 65 A 1049 PRO GLY LYS SER THR GLY GLU ALA MET GLU LEU MET GLU SEQRES 66 A 1049 GLN LEU ALA SER LYS LEU PRO THR GLY VAL GLY TYR ASP SEQRES 67 A 1049 TRP THR GLY MET SER TYR GLN GLU ARG LEU SER GLY ASN SEQRES 68 A 1049 GLN ALA PRO SER LEU TYR ALA ILE SER LEU ILE VAL VAL SEQRES 69 A 1049 PHE LEU CYS LEU ALA ALA LEU TYR GLU SER TRP SER ILE SEQRES 70 A 1049 PRO PHE SER VAL MET LEU VAL VAL PRO LEU GLY VAL ILE SEQRES 71 A 1049 GLY ALA LEU LEU ALA ALA THR PHE ARG GLY LEU THR ASN SEQRES 72 A 1049 ASP VAL TYR PHE GLN VAL GLY LEU LEU THR THR ILE GLY SEQRES 73 A 1049 LEU SER ALA LYS ASN ALA ILE LEU ILE VAL GLU PHE ALA SEQRES 74 A 1049 LYS ASP LEU MET ASP LYS GLU GLY LYS GLY LEU ILE GLU SEQRES 75 A 1049 ALA THR LEU ASP ALA VAL ARG MET ARG LEU ARG PRO ILE SEQRES 76 A 1049 LEU MET THR SER LEU ALA PHE ILE LEU GLY VAL MET PRO SEQRES 77 A 1049 LEU VAL ILE SER THR GLY ALA GLY SER GLY ALA GLN ASN SEQRES 78 A 1049 ALA VAL GLY THR GLY VAL MET GLY GLY MET VAL THR ALA SEQRES 79 A 1049 THR VAL LEU ALA ILE PHE PHE VAL PRO VAL PHE PHE VAL SEQRES 80 A 1049 VAL VAL ARG ARG ARG PHE SER ARG LYS ASN GLU ASP ILE SEQRES 81 A 1049 GLU HIS SER HIS THR VAL ASP HIS HIS HET RHQ A2001 33 HETNAM RHQ RHODAMINE 6G FORMUL 2 RHQ C28 H31 N2 O3 1+ HELIX 1 1 ARG A 8 LEU A 28 1 21 HELIX 2 2 ASP A 53 VAL A 61 1 9 HELIX 3 3 VAL A 61 ASN A 68 1 8 HELIX 4 4 ASP A 99 GLN A 112 1 14 HELIX 5 5 LEU A 113 LEU A 118 5 6 HELIX 6 6 PRO A 119 GLN A 124 1 6 HELIX 7 7 GLU A 152 ALA A 160 1 9 HELIX 8 8 MET A 162 SER A 167 1 6 HELIX 9 9 ASN A 189 LYS A 195 1 7 HELIX 10 10 THR A 199 ASN A 211 1 13 HELIX 11 11 SER A 242 LYS A 248 1 7 HELIX 12 12 LEU A 262 VAL A 265 1 4 HELIX 13 13 ALA A 299 ALA A 304 1 6 HELIX 14 14 THR A 329 LEU A 359 1 31 HELIX 15 15 ALA A 371 GLY A 387 1 17 HELIX 16 16 ASN A 391 GLU A 423 1 33 HELIX 17 17 PRO A 427 SER A 434 1 8 HELIX 18 18 SER A 434 SER A 450 1 17 HELIX 19 19 GLY A 460 SER A 462 5 3 HELIX 20 20 THR A 463 ALA A 485 1 23 HELIX 21 21 ILE A 487 MET A 496 1 10 HELIX 22 22 PHE A 513 HIS A 525 1 13 HELIX 23 23 HIS A 525 SER A 537 1 13 HELIX 24 24 THR A 538 ARG A 558 1 21 HELIX 25 25 THR A 583 THR A 600 1 18 HELIX 26 26 ASP A 633 ARG A 637 5 5 HELIX 27 27 LYS A 643 SER A 656 1 14 HELIX 28 28 GLY A 691 HIS A 709 1 19 HELIX 29 29 ASP A 732 GLY A 740 1 9 HELIX 30 30 SER A 742 GLY A 755 1 14 HELIX 31 31 GLU A 776 ARG A 780 5 5 HELIX 32 32 LEU A 782 ASP A 788 5 7 HELIX 33 33 PHE A 801 SER A 805 1 5 HELIX 34 34 THR A 837 LYS A 850 1 14 HELIX 35 35 ASN A 871 LEU A 888 1 18 HELIX 36 36 SER A 896 MET A 902 5 7 HELIX 37 37 LEU A 903 ARG A 919 1 17 HELIX 38 38 ASP A 924 ASP A 954 1 31 HELIX 39 39 GLU A 962 ARG A 969 1 8 HELIX 40 40 ARG A 971 VAL A 986 1 16 HELIX 41 41 VAL A 986 ILE A 991 1 6 HELIX 42 42 GLY A 998 ILE A 1019 1 22 HELIX 43 43 PHE A 1025 PHE A 1033 1 9 SHEET 1 A 4 VAL A 855 ASP A 858 0 SHEET 2 A 4 GLY A 679 ASP A 686 -1 N ILE A 685 O GLY A 856 SHEET 3 A 4 LEU A 822 GLN A 830 -1 O ILE A 827 N PHE A 682 SHEET 4 A 4 SER A 715 PRO A 718 -1 N SER A 715 O GLN A 830 SHEET 1 B 8 VAL A 855 ASP A 858 0 SHEET 2 B 8 GLY A 679 ASP A 686 -1 N ILE A 685 O GLY A 856 SHEET 3 B 8 LEU A 822 GLN A 830 -1 O ILE A 827 N PHE A 682 SHEET 4 B 8 ARG A 815 TYR A 819 -1 N TYR A 819 O LEU A 822 SHEET 5 B 8 TYR A 77 ASP A 83 -1 N SER A 80 O ARG A 818 SHEET 6 B 8 THR A 87 THR A 93 -1 O THR A 91 N SER A 79 SHEET 7 B 8 ALA A 42 SER A 48 -1 N ILE A 45 O ILE A 90 SHEET 8 B 8 SER A 128 LYS A 131 -1 O SER A 128 N SER A 46 SHEET 1 C 4 LEU A 321 VAL A 324 0 SHEET 2 C 4 PHE A 136 ASN A 144 -1 N ILE A 143 O LYS A 322 SHEET 3 C 4 GLN A 284 LEU A 293 -1 O SER A 287 N VAL A 142 SHEET 4 C 4 VAL A 172 LEU A 177 -1 N GLN A 176 O GLY A 290 SHEET 1 D 8 LEU A 321 VAL A 324 0 SHEET 2 D 8 PHE A 136 ASN A 144 -1 N ILE A 143 O LYS A 322 SHEET 3 D 8 GLN A 284 LEU A 293 -1 O SER A 287 N VAL A 142 SHEET 4 D 8 ILE A 278 PHE A 281 -1 N PHE A 281 O GLN A 284 SHEET 5 D 8 VAL A 606 PHE A 615 -1 O ALA A 611 N GLU A 280 SHEET 6 D 8 ARG A 620 LEU A 631 -1 O ILE A 626 N VAL A 612 SHEET 7 D 8 VAL A 571 GLN A 577 -1 N VAL A 576 O GLY A 625 SHEET 8 D 8 MET A 662 VAL A 663 -1 O MET A 662 N GLN A 577 SHEET 1 E 4 ALA A 266 GLY A 272 0 SHEET 2 E 4 TYR A 182 MET A 188 -1 N TRP A 187 O LYS A 267 SHEET 3 E 4 ARG A 767 VAL A 773 1 O LYS A 770 N MET A 184 SHEET 4 E 4 SER A 757 ASP A 764 -1 N PHE A 762 O LYS A 769 SHEET 1 F 2 GLN A 218 LEU A 219 0 SHEET 2 F 2 ALA A 232 SER A 233 -1 O ALA A 232 N LEU A 219 SHEET 1 G 2 LEU A 250 ASN A 254 0 SHEET 2 G 2 SER A 258 LEU A 261 -1 O VAL A 260 N LYS A 252 SHEET 1 H 2 PRO A 725 ILE A 729 0 SHEET 2 H 2 SER A 807 TYR A 811 -1 O GLU A 810 N GLN A 726 SHEET 1 I 2 TYR A 790 ARG A 792 0 SHEET 2 I 2 MET A 798 PRO A 800 -1 O VAL A 799 N VAL A 791 CISPEP 1 ARG A 307 ALA A 308 0 4.25 CISPEP 2 ALA A 308 GLU A 309 0 -1.59 CISPEP 3 THR A 993 GLY A 994 0 5.06 CRYST1 144.800 144.800 518.614 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006906 0.003987 0.000000 0.00000 SCALE2 0.000000 0.007974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001928 0.00000