HEADER TRANSFERASE 11-APR-03 1P16 TITLE STRUCTURE OF AN MRNA CAPPING ENZYME BOUND TO THE PHOSPHORYLATED TITLE 2 CARBOXYL-TERMINAL DOMAIN OF RNA POLYMERASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA CAPPING ENZYME ALPHA SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-395 OD SWS P78587; COMPND 5 SYNONYM: MRNA GUANYLYLTRANSFERASE; GTP--RNA GUANYLYLTRANSFERASE; COMPND 6 GTASE; COMPND 7 EC: 2.7.7.50; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PHOSPHORYLATED PEPTIDE FROM C-TERMINAL OF RNA POLYMERASE COMPND 12 II; COMPND 13 CHAIN: C, D; COMPND 14 SYNONYM: PHOSPHORYLATED CTD PEPTIDE; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS; SOURCE 3 ORGANISM_TAXID: 5476; SOURCE 4 GENE: CGT1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3; SOURCE 10 OTHER_DETAILS: MODIFIED PET15B (N-TERMINAL SUMO FUSION); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: NATURALLY OCCURING REPETITIVE YSPTSPS SEQUENCE KEYWDS GUANYLYLTRANSFERASE, CANDIDA ALBICANS, RNA POLYMERASE II, KEYWDS 2 TRANSCRIPTION, CAPPING, CTD, MRNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.FABREGA,V.SHEN,S.SHUMAN,C.D.LIMA REVDAT 3 27-OCT-21 1P16 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1P16 1 VERSN REVDAT 1 15-JUL-03 1P16 0 JRNL AUTH C.FABREGA,V.SHEN,S.SHUMAN,C.D.LIMA JRNL TITL STRUCTURE OF AN MRNA CAPPING ENZYME BOUND TO THE JRNL TITL 2 PHOSPHORYLATED CARBOXY-TERMINAL DOMAIN OF RNA POLYMERASE II. JRNL REF MOL.CELL V. 11 1549 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12820968 JRNL DOI 10.1016/S1097-2765(03)00187-4 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1505758.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 27993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1408 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4161 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6513 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.73000 REMARK 3 B22 (A**2) : 10.89000 REMARK 3 B33 (A**2) : -6.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.940 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 38.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SEP.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NUC.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : SEP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NUC.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M AMMONIUM PHOSPHATE, 50MM HEPES, 3% REMARK 280 DMSO, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 391 REMARK 465 HIS A 392 REMARK 465 PHE A 393 REMARK 465 ASN A 394 REMARK 465 GLY A 395 REMARK 465 ASP B 263 REMARK 465 PRO B 264 REMARK 465 ASP B 265 REMARK 465 LEU B 266 REMARK 465 ASP B 267 REMARK 465 GLU B 268 REMARK 465 ARG B 269 REMARK 465 ASP B 270 REMARK 465 PRO B 271 REMARK 465 THR B 272 REMARK 465 SER B 273 REMARK 465 THR B 274 REMARK 465 GLN B 390 REMARK 465 LYS B 391 REMARK 465 HIS B 392 REMARK 465 PHE B 393 REMARK 465 ASN B 394 REMARK 465 GLY B 395 REMARK 465 TYR C 94 REMARK 465 SER C 95 REMARK 465 PRO C 96 REMARK 465 THR C 97 REMARK 465 SEP C 98 REMARK 465 PRO C 99 REMARK 465 SER C 100 REMARK 465 TYR C 101 REMARK 465 SER C 102 REMARK 465 PRO C 103 REMARK 465 PRO C 113 REMARK 465 SER C 114 REMARK 465 TYR D 101 REMARK 465 SER D 102 REMARK 465 PRO D 103 REMARK 465 SER D 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 389 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 51.38 -66.84 REMARK 500 GLU A 55 -77.34 -120.23 REMARK 500 ASN A 109 40.50 -107.29 REMARK 500 LYS A 114 74.01 -118.02 REMARK 500 ASN A 131 60.50 -109.46 REMARK 500 VAL A 134 -80.14 -117.86 REMARK 500 PRO A 137 105.16 -44.87 REMARK 500 VAL A 170 -60.69 -122.36 REMARK 500 PHE A 192 166.05 178.32 REMARK 500 ASP A 220 89.64 -171.80 REMARK 500 PRO A 244 104.25 -50.68 REMARK 500 ASN A 248 -174.91 -69.69 REMARK 500 PHE A 258 150.34 -49.60 REMARK 500 PRO A 271 1.20 -61.23 REMARK 500 ASP A 279 46.94 -89.59 REMARK 500 GLN A 291 -5.77 -166.63 REMARK 500 SER A 293 85.89 37.26 REMARK 500 ASN A 294 14.94 51.03 REMARK 500 PHE A 299 -71.33 -135.16 REMARK 500 ASP A 303 75.84 -116.09 REMARK 500 GLU A 316 55.52 -108.45 REMARK 500 GLN A 328 150.41 -42.63 REMARK 500 THR A 331 -94.36 -118.85 REMARK 500 ARG A 342 62.35 -108.79 REMARK 500 ASN A 343 11.69 -65.60 REMARK 500 LYS A 362 -79.19 -106.72 REMARK 500 GLU A 372 1.34 -66.16 REMARK 500 ARG A 389 -70.89 -65.68 REMARK 500 PRO B 10 154.42 -47.44 REMARK 500 PRO B 13 51.65 -67.77 REMARK 500 GLU B 55 -72.53 -120.66 REMARK 500 HIS B 119 96.28 -166.78 REMARK 500 ASN B 131 48.60 -142.11 REMARK 500 ASN B 133 -21.40 -156.53 REMARK 500 VAL B 134 -17.31 60.67 REMARK 500 ASP B 156 36.33 -89.66 REMARK 500 LYS B 211 -1.43 -167.88 REMARK 500 LEU B 276 80.88 -68.05 REMARK 500 TYR B 278 -82.53 -91.54 REMARK 500 ALA B 280 -93.70 -133.44 REMARK 500 LYS B 281 87.67 -167.42 REMARK 500 PRO B 282 98.16 -55.81 REMARK 500 ASP B 303 52.69 -102.21 REMARK 500 THR B 331 6.09 -63.13 REMARK 500 LYS B 332 84.49 51.20 REMARK 500 LYS B 333 -63.94 -138.44 REMARK 500 PRO C 110 84.09 -57.34 REMARK 500 THR C 111 89.86 -165.50 REMARK 500 THR D 111 -95.55 -48.75 REMARK 500 PRO D 113 107.07 -21.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 7002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 7005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G A 1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 5001 DBREF 1P16 A 1 395 UNP P78587 MCE1_CANAL 1 395 DBREF 1P16 B 1 395 UNP P78587 MCE1_CANAL 1 395 DBREF 1P16 C 94 114 PDB 1P16 1P16 94 114 DBREF 1P16 D 101 121 PDB 1P16 1P16 101 121 SEQADV 1P16 MSE A 1 UNP P78587 MET 1 CLONING ARTIFACT SEQADV 1P16 VAL A 2 UNP P78587 ILE 2 ENGINEERED MUTATION SEQADV 1P16 MSE A 28 UNP P78587 MET 28 CLONING ARTIFACT SEQADV 1P16 MSE A 58 UNP P78587 MET 58 CLONING ARTIFACT SEQADV 1P16 MSE A 171 UNP P78587 MET 171 CLONING ARTIFACT SEQADV 1P16 MSE A 199 UNP P78587 MET 199 CLONING ARTIFACT SEQADV 1P16 MSE A 212 UNP P78587 MET 212 CLONING ARTIFACT SEQADV 1P16 MSE A 338 UNP P78587 MET 338 CLONING ARTIFACT SEQADV 1P16 MSE B 1 UNP P78587 MET 1 CLONING ARTIFACT SEQADV 1P16 VAL B 2 UNP P78587 ILE 2 ENGINEERED MUTATION SEQADV 1P16 MSE B 28 UNP P78587 MET 28 CLONING ARTIFACT SEQADV 1P16 MSE B 58 UNP P78587 MET 58 CLONING ARTIFACT SEQADV 1P16 MSE B 171 UNP P78587 MET 171 CLONING ARTIFACT SEQADV 1P16 MSE B 199 UNP P78587 MET 199 CLONING ARTIFACT SEQADV 1P16 MSE B 212 UNP P78587 MET 212 CLONING ARTIFACT SEQADV 1P16 MSE B 338 UNP P78587 MET 338 CLONING ARTIFACT SEQRES 1 A 395 MSE VAL GLN LEU GLU GLU ARG GLU ILE PRO VAL ILE PRO SEQRES 2 A 395 GLY ASN LYS LEU ASP GLU GLU GLU THR LYS GLU LEU ARG SEQRES 3 A 395 LEU MSE VAL ALA GLU LEU LEU GLY ARG ARG ASN THR GLY SEQRES 4 A 395 PHE PRO GLY SER GLN PRO VAL SER PHE GLU ARG ARG HIS SEQRES 5 A 395 LEU GLU GLU THR LEU MSE GLN LYS ASP TYR PHE VAL CYS SEQRES 6 A 395 GLU LYS THR ASP GLY LEU ARG CYS LEU LEU PHE LEU ILE SEQRES 7 A 395 ASN ASP PRO ASP LYS GLY GLU GLY VAL PHE LEU VAL THR SEQRES 8 A 395 ARG GLU ASN ASP TYR TYR PHE ILE PRO ASN ILE HIS PHE SEQRES 9 A 395 PRO LEU SER VAL ASN GLU THR ARG GLU LYS PRO THR TYR SEQRES 10 A 395 HIS HIS GLY THR LEU LEU ASP GLY GLU LEU VAL LEU GLU SEQRES 11 A 395 ASN ARG ASN VAL SER GLU PRO VAL LEU ARG TYR VAL ILE SEQRES 12 A 395 PHE ASP ALA LEU ALA ILE HIS GLY LYS CYS ILE ILE ASP SEQRES 13 A 395 ARG PRO LEU PRO LYS ARG LEU GLY TYR ILE THR GLU ASN SEQRES 14 A 395 VAL MSE LYS PRO PHE ASP ASN PHE LYS LYS HIS ASN PRO SEQRES 15 A 395 ASP ILE VAL ASN SER PRO GLU PHE PRO PHE LYS VAL GLY SEQRES 16 A 395 PHE LYS THR MSE LEU THR SER TYR HIS ALA ASP ASP VAL SEQRES 17 A 395 LEU SER LYS MSE ASP LYS LEU PHE HIS ALA SER ASP GLY SEQRES 18 A 395 LEU ILE TYR THR CYS ALA GLU THR PRO TYR VAL PHE GLY SEQRES 19 A 395 THR ASP GLN THR LEU LEU LYS TRP LYS PRO ALA GLU GLU SEQRES 20 A 395 ASN THR VAL ASP PHE GLN LEU GLU PHE VAL PHE ASN GLU SEQRES 21 A 395 VAL GLN ASP PRO ASP LEU ASP GLU ARG ASP PRO THR SER SEQRES 22 A 395 THR TYR LEU ASP TYR ASP ALA LYS PRO ASN LEU ILE LYS SEQRES 23 A 395 LEU ARG VAL TRP GLN GLY SER ASN VAL HIS THR ASP PHE SEQRES 24 A 395 ALA LYS LEU ASP LEU SER ASP ASP ASP TRP GLU ARG LEU SEQRES 25 A 395 LYS ALA LEU GLU GLN PRO LEU GLN GLY ARG ILE ALA GLU SEQRES 26 A 395 CYS ARG GLN SER THR THR LYS LYS GLY TYR TRP GLU MSE SEQRES 27 A 395 LEU ARG PHE ARG ASN ASP LYS SER ASN GLY ASN HIS ILE SEQRES 28 A 395 SER VAL VAL GLU LYS ILE LEU VAL SER ILE LYS ASP GLY SEQRES 29 A 395 VAL LYS GLU LYS GLU VAL ILE GLU TRP CYS PRO LYS ILE SEQRES 30 A 395 SER ARG ALA TRP LYS LYS ARG GLU ASN ASP ARG ARG GLN SEQRES 31 A 395 LYS HIS PHE ASN GLY SEQRES 1 B 395 MSE VAL GLN LEU GLU GLU ARG GLU ILE PRO VAL ILE PRO SEQRES 2 B 395 GLY ASN LYS LEU ASP GLU GLU GLU THR LYS GLU LEU ARG SEQRES 3 B 395 LEU MSE VAL ALA GLU LEU LEU GLY ARG ARG ASN THR GLY SEQRES 4 B 395 PHE PRO GLY SER GLN PRO VAL SER PHE GLU ARG ARG HIS SEQRES 5 B 395 LEU GLU GLU THR LEU MSE GLN LYS ASP TYR PHE VAL CYS SEQRES 6 B 395 GLU LYS THR ASP GLY LEU ARG CYS LEU LEU PHE LEU ILE SEQRES 7 B 395 ASN ASP PRO ASP LYS GLY GLU GLY VAL PHE LEU VAL THR SEQRES 8 B 395 ARG GLU ASN ASP TYR TYR PHE ILE PRO ASN ILE HIS PHE SEQRES 9 B 395 PRO LEU SER VAL ASN GLU THR ARG GLU LYS PRO THR TYR SEQRES 10 B 395 HIS HIS GLY THR LEU LEU ASP GLY GLU LEU VAL LEU GLU SEQRES 11 B 395 ASN ARG ASN VAL SER GLU PRO VAL LEU ARG TYR VAL ILE SEQRES 12 B 395 PHE ASP ALA LEU ALA ILE HIS GLY LYS CYS ILE ILE ASP SEQRES 13 B 395 ARG PRO LEU PRO LYS ARG LEU GLY TYR ILE THR GLU ASN SEQRES 14 B 395 VAL MSE LYS PRO PHE ASP ASN PHE LYS LYS HIS ASN PRO SEQRES 15 B 395 ASP ILE VAL ASN SER PRO GLU PHE PRO PHE LYS VAL GLY SEQRES 16 B 395 PHE LYS THR MSE LEU THR SER TYR HIS ALA ASP ASP VAL SEQRES 17 B 395 LEU SER LYS MSE ASP LYS LEU PHE HIS ALA SER ASP GLY SEQRES 18 B 395 LEU ILE TYR THR CYS ALA GLU THR PRO TYR VAL PHE GLY SEQRES 19 B 395 THR ASP GLN THR LEU LEU LYS TRP LYS PRO ALA GLU GLU SEQRES 20 B 395 ASN THR VAL ASP PHE GLN LEU GLU PHE VAL PHE ASN GLU SEQRES 21 B 395 VAL GLN ASP PRO ASP LEU ASP GLU ARG ASP PRO THR SER SEQRES 22 B 395 THR TYR LEU ASP TYR ASP ALA LYS PRO ASN LEU ILE LYS SEQRES 23 B 395 LEU ARG VAL TRP GLN GLY SER ASN VAL HIS THR ASP PHE SEQRES 24 B 395 ALA LYS LEU ASP LEU SER ASP ASP ASP TRP GLU ARG LEU SEQRES 25 B 395 LYS ALA LEU GLU GLN PRO LEU GLN GLY ARG ILE ALA GLU SEQRES 26 B 395 CYS ARG GLN SER THR THR LYS LYS GLY TYR TRP GLU MSE SEQRES 27 B 395 LEU ARG PHE ARG ASN ASP LYS SER ASN GLY ASN HIS ILE SEQRES 28 B 395 SER VAL VAL GLU LYS ILE LEU VAL SER ILE LYS ASP GLY SEQRES 29 B 395 VAL LYS GLU LYS GLU VAL ILE GLU TRP CYS PRO LYS ILE SEQRES 30 B 395 SER ARG ALA TRP LYS LYS ARG GLU ASN ASP ARG ARG GLN SEQRES 31 B 395 LYS HIS PHE ASN GLY SEQRES 1 C 21 TYR SER PRO THR SEP PRO SER TYR SER PRO THR SEP PRO SEQRES 2 C 21 SER TYR SER PRO THR SEP PRO SER SEQRES 1 D 21 TYR SER PRO THR SEP PRO SER TYR SER PRO THR SEP PRO SEQRES 2 D 21 SER TYR SER PRO THR SEP PRO SER MODRES 1P16 MSE A 1 MET SELENOMETHIONINE MODRES 1P16 MSE A 28 MET SELENOMETHIONINE MODRES 1P16 MSE A 58 MET SELENOMETHIONINE MODRES 1P16 MSE A 171 MET SELENOMETHIONINE MODRES 1P16 MSE A 199 MET SELENOMETHIONINE MODRES 1P16 MSE A 212 MET SELENOMETHIONINE MODRES 1P16 MSE A 338 MET SELENOMETHIONINE MODRES 1P16 MSE B 1 MET SELENOMETHIONINE MODRES 1P16 MSE B 28 MET SELENOMETHIONINE MODRES 1P16 MSE B 58 MET SELENOMETHIONINE MODRES 1P16 MSE B 171 MET SELENOMETHIONINE MODRES 1P16 MSE B 199 MET SELENOMETHIONINE MODRES 1P16 MSE B 212 MET SELENOMETHIONINE MODRES 1P16 MSE B 338 MET SELENOMETHIONINE MODRES 1P16 SEP C 105 SER PHOSPHOSERINE MODRES 1P16 SEP C 112 SER PHOSPHOSERINE MODRES 1P16 SEP D 105 SER PHOSPHOSERINE MODRES 1P16 SEP D 112 SER PHOSPHOSERINE MODRES 1P16 SEP D 119 SER PHOSPHOSERINE HET MSE A 1 8 HET MSE A 28 8 HET MSE A 58 8 HET MSE A 171 8 HET MSE A 199 8 HET MSE A 212 8 HET MSE A 338 8 HET MSE B 1 8 HET MSE B 28 8 HET MSE B 58 8 HET MSE B 171 8 HET MSE B 199 8 HET MSE B 212 8 HET MSE B 338 8 HET SEP C 105 10 HET SEP C 112 10 HET SEP D 105 10 HET SEP D 112 10 HET SEP D 119 10 HET PO4 A7001 5 HET PO4 A7002 5 HET PO4 A7005 5 HET G A1167 23 HET GTP B5001 32 HETNAM MSE SELENOMETHIONINE HETNAM SEP PHOSPHOSERINE HETNAM PO4 PHOSPHATE ION HETNAM G GUANOSINE-5'-MONOPHOSPHATE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETSYN SEP PHOSPHONOSERINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SEP 5(C3 H8 N O6 P) FORMUL 5 PO4 3(O4 P 3-) FORMUL 8 G C10 H14 N5 O8 P FORMUL 9 GTP C10 H16 N5 O14 P3 FORMUL 10 HOH *433(H2 O) HELIX 1 1 ASP A 18 GLY A 34 1 17 HELIX 2 2 GLU A 49 GLU A 55 1 7 HELIX 3 3 GLU A 55 LYS A 60 1 6 HELIX 4 4 PRO A 158 VAL A 170 1 13 HELIX 5 5 VAL A 170 ASN A 181 1 12 HELIX 6 6 ASN A 181 ASN A 186 1 6 HELIX 7 7 ALA A 205 SER A 210 1 6 HELIX 8 8 LYS A 211 LEU A 215 5 5 HELIX 9 9 PRO A 244 ASN A 248 5 5 HELIX 10 10 SER A 305 LEU A 315 1 11 HELIX 11 11 HIS A 350 GLY A 364 1 15 HELIX 12 12 LYS A 366 GLN A 390 1 25 HELIX 13 13 ASP B 18 LEU B 33 1 16 HELIX 14 14 GLU B 49 GLU B 55 1 7 HELIX 15 15 GLU B 55 LYS B 60 1 6 HELIX 16 16 PRO B 158 VAL B 170 1 13 HELIX 17 17 VAL B 170 ASN B 181 1 12 HELIX 18 18 ASN B 181 ASN B 186 1 6 HELIX 19 19 HIS B 204 SER B 210 1 7 HELIX 20 20 LYS B 211 LEU B 215 5 5 HELIX 21 21 PRO B 244 ASN B 248 5 5 HELIX 22 22 SER B 305 LEU B 315 1 11 HELIX 23 23 HIS B 350 LYS B 362 1 13 HELIX 24 24 LYS B 366 ARG B 388 1 23 SHEET 1 A 7 ASN A 15 LYS A 16 0 SHEET 2 A 7 TYR A 96 PHE A 98 -1 O PHE A 98 N ASN A 15 SHEET 3 A 7 GLY A 84 THR A 91 -1 N LEU A 89 O TYR A 97 SHEET 4 A 7 LEU A 71 ASP A 80 -1 N PHE A 76 O PHE A 88 SHEET 5 A 7 THR A 121 GLU A 130 -1 O THR A 121 N LEU A 77 SHEET 6 A 7 VAL A 138 ILE A 149 -1 O ARG A 140 N VAL A 128 SHEET 7 A 7 LYS A 152 CYS A 153 -1 O LYS A 152 N ILE A 149 SHEET 1 B 7 ASN A 15 LYS A 16 0 SHEET 2 B 7 TYR A 96 PHE A 98 -1 O PHE A 98 N ASN A 15 SHEET 3 B 7 GLY A 84 THR A 91 -1 N LEU A 89 O TYR A 97 SHEET 4 B 7 LEU A 71 ASP A 80 -1 N PHE A 76 O PHE A 88 SHEET 5 B 7 THR A 121 GLU A 130 -1 O THR A 121 N LEU A 77 SHEET 6 B 7 VAL A 138 ILE A 149 -1 O ARG A 140 N VAL A 128 SHEET 7 B 7 LYS A 193 PHE A 196 1 O GLY A 195 N ILE A 143 SHEET 1 C 5 SER A 43 SER A 47 0 SHEET 2 C 5 GLY A 234 TRP A 242 1 O LEU A 239 N VAL A 46 SHEET 3 C 5 SER A 219 CYS A 226 -1 N TYR A 224 O LEU A 240 SHEET 4 C 5 TYR A 62 THR A 68 -1 N PHE A 63 O THR A 225 SHEET 5 C 5 LEU A 200 THR A 201 -1 O LEU A 200 N VAL A 64 SHEET 1 D 6 VAL A 250 VAL A 257 0 SHEET 2 D 6 LEU A 284 TRP A 290 -1 O ARG A 288 N GLN A 253 SHEET 3 D 6 HIS A 296 LEU A 302 -1 O THR A 297 N VAL A 289 SHEET 4 D 6 TYR A 335 PHE A 341 1 O TRP A 336 N LYS A 301 SHEET 5 D 6 ILE A 323 GLN A 328 -1 N GLU A 325 O LEU A 339 SHEET 6 D 6 VAL A 250 VAL A 257 -1 N PHE A 252 O ALA A 324 SHEET 1 E 2 ASN A 259 GLN A 262 0 SHEET 2 E 2 THR A 274 ASP A 277 -1 O TYR A 275 N VAL A 261 SHEET 1 F 5 SER B 43 SER B 47 0 SHEET 2 F 5 GLY B 234 TRP B 242 1 O ASP B 236 N GLN B 44 SHEET 3 F 5 GLY B 221 CYS B 226 -1 N LEU B 222 O TRP B 242 SHEET 4 F 5 TYR B 62 LYS B 67 -1 N CYS B 65 O ILE B 223 SHEET 5 F 5 LEU B 200 THR B 201 -1 O LEU B 200 N VAL B 64 SHEET 1 G 6 TYR B 96 PHE B 98 0 SHEET 2 G 6 GLY B 84 THR B 91 -1 N LEU B 89 O TYR B 97 SHEET 3 G 6 LEU B 71 ASP B 80 -1 N PHE B 76 O PHE B 88 SHEET 4 G 6 THR B 121 GLU B 130 -1 O LEU B 127 N LEU B 71 SHEET 5 G 6 VAL B 138 ILE B 149 -1 O ASP B 145 N ASP B 124 SHEET 6 G 6 LYS B 152 CYS B 153 -1 O LYS B 152 N ILE B 149 SHEET 1 H 6 TYR B 96 PHE B 98 0 SHEET 2 H 6 GLY B 84 THR B 91 -1 N LEU B 89 O TYR B 97 SHEET 3 H 6 LEU B 71 ASP B 80 -1 N PHE B 76 O PHE B 88 SHEET 4 H 6 THR B 121 GLU B 130 -1 O LEU B 127 N LEU B 71 SHEET 5 H 6 VAL B 138 ILE B 149 -1 O ASP B 145 N ASP B 124 SHEET 6 H 6 LYS B 193 PHE B 196 1 O LYS B 193 N TYR B 141 SHEET 1 I 6 VAL B 250 PHE B 256 0 SHEET 2 I 6 ILE B 285 TRP B 290 -1 O ARG B 288 N GLN B 253 SHEET 3 I 6 HIS B 296 LEU B 302 -1 O ALA B 300 N LEU B 287 SHEET 4 I 6 TYR B 335 ARG B 342 1 O TRP B 336 N LYS B 301 SHEET 5 I 6 ILE B 323 GLN B 328 -1 N GLU B 325 O LEU B 339 SHEET 6 I 6 VAL B 250 PHE B 256 -1 N VAL B 250 O CYS B 326 LINK C MSE A 1 N VAL A 2 1555 1555 1.33 LINK C LEU A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N VAL A 29 1555 1555 1.32 LINK C LEU A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N GLN A 59 1555 1555 1.33 LINK NZ LYS A 67 P G A1167 1555 1555 1.49 LINK C VAL A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N LYS A 172 1555 1555 1.33 LINK C THR A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N LEU A 200 1555 1555 1.33 LINK C LYS A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N ASP A 213 1555 1555 1.33 LINK C GLU A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N LEU A 339 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C LEU B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N VAL B 29 1555 1555 1.32 LINK C LEU B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N GLN B 59 1555 1555 1.33 LINK C VAL B 170 N MSE B 171 1555 1555 1.33 LINK C MSE B 171 N LYS B 172 1555 1555 1.33 LINK C THR B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N LEU B 200 1555 1555 1.33 LINK C LYS B 211 N MSE B 212 1555 1555 1.33 LINK C MSE B 212 N ASP B 213 1555 1555 1.33 LINK C GLU B 337 N MSE B 338 1555 1555 1.33 LINK C MSE B 338 N LEU B 339 1555 1555 1.33 LINK C THR C 104 N SEP C 105 1555 1555 1.33 LINK C SEP C 105 N PRO C 106 1555 1555 1.35 LINK C THR C 111 N SEP C 112 1555 1555 1.33 LINK C THR D 104 N SEP D 105 1555 1555 1.33 LINK C SEP D 105 N PRO D 106 1555 1555 1.34 LINK C THR D 111 N SEP D 112 1555 1555 1.33 LINK C SEP D 112 N PRO D 113 1555 1555 1.34 LINK C THR D 118 N SEP D 119 1555 1555 1.33 LINK C SEP D 119 N PRO D 120 1555 1555 1.34 SITE 1 AC1 5 GLN A 44 ARG A 92 LYS A 241 G A1167 SITE 2 AC1 5 HOH A7097 SITE 1 AC2 1 LYS A 23 SITE 1 AC3 1 ARG A 26 SITE 1 AC4 13 GLN A 44 PRO A 45 CYS A 65 LYS A 67 SITE 2 AC4 13 THR A 68 GLU A 126 PHE A 144 LYS A 197 SITE 3 AC4 13 ILE A 223 LEU A 239 PO4 A7001 HOH A7092 SITE 4 AC4 13 HOH A7135 SITE 1 AC5 14 GLN B 44 PRO B 45 LYS B 67 ARG B 72 SITE 2 AC5 14 GLU B 126 PHE B 144 LYS B 197 ILE B 223 SITE 3 AC5 14 LEU B 239 LYS B 241 LYS B 243 HOH B5051 SITE 4 AC5 14 HOH B5132 HOH B5151 CRYST1 47.112 124.970 92.705 90.00 100.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021226 0.000000 0.003948 0.00000 SCALE2 0.000000 0.008002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010972 0.00000 HETATM 1 N MSE A 1 15.537 68.911 93.658 1.00 87.33 N HETATM 2 CA MSE A 1 15.183 67.644 94.359 1.00 86.80 C HETATM 3 C MSE A 1 15.947 66.449 93.804 1.00 85.13 C HETATM 4 O MSE A 1 16.676 66.562 92.817 1.00 84.60 O HETATM 5 CB MSE A 1 13.683 67.373 94.244 1.00 88.59 C HETATM 6 CG MSE A 1 13.189 67.260 92.813 1.00 90.88 C HETATM 7 SE MSE A 1 11.509 66.600 92.691 1.00 93.28 SE HETATM 8 CE MSE A 1 11.836 64.967 91.956 1.00 92.20 C