HEADER SIGNALING PROTEIN 14-APR-03 1P22 TITLE STRUCTURE OF A BETA-TRCP1-SKP1-BETA-CATENIN COMPLEX: TITLE 2 DESTRUCTION MOTIF BINDING AND LYSINE SPECIFICITY ON THE TITLE 3 SCFBETA-TRCP1 UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX/WD-REPEAT PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: F-BOX AND WD-REPEATS PROTEIN BETA-TRCP, COMPND 5 E3RSIKAPPAB, PIKAPPABALPHA-E3 RECEPTOR SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SKP1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: BETA-CATENIN; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PRO2286; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: CTNNB1 OR CTNNB; SOURCE 24 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS UBIQUITINATION, DEGRADATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.WU,G.XU,B.A.SCHULMAN,P.D.JEFFREY,J.W.HARPER,N.P.PAVLETICH REVDAT 2 24-FEB-09 1P22 1 VERSN REVDAT 1 08-JUL-03 1P22 0 JRNL AUTH G.WU,G.XU,B.A.SCHULMAN,P.D.JEFFREY,J.W.HARPER, JRNL AUTH 2 N.P.PAVLETICH JRNL TITL STRUCTURE OF A BETA-TRCP1-SKP1-BETA-CATENIN JRNL TITL 2 COMPLEX: DESTRUCTION MOTIF BINDING AND LYSINE JRNL TITL 3 SPECIFICITY OF THE SCFBETA-TRCP1 UBIQUITIN LIGASE JRNL REF MOL.CELL V. 11 1445 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12820959 JRNL DOI 10.1016/S1097-2765(03)00234-X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P22 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, BIS-TRIS REMARK 280 PROPANE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.16667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 ASN A 219 REMARK 465 LYS A 220 REMARK 465 PRO A 221 REMARK 465 PRO A 222 REMARK 465 ASP A 223 REMARK 465 GLY A 224 REMARK 465 ASN A 225 REMARK 465 ALA A 226 REMARK 465 PHE A 546 REMARK 465 LEU A 547 REMARK 465 ASN A 548 REMARK 465 ASP A 549 REMARK 465 PRO A 550 REMARK 465 ALA A 551 REMARK 465 ALA A 552 REMARK 465 GLN A 553 REMARK 465 ALA A 554 REMARK 465 GLU A 555 REMARK 465 PRO A 556 REMARK 465 PRO A 557 REMARK 465 ARG A 558 REMARK 465 SER A 559 REMARK 465 PRO A 560 REMARK 465 SER A 561 REMARK 465 ARG A 562 REMARK 465 THR A 563 REMARK 465 TYR A 564 REMARK 465 THR A 565 REMARK 465 TYR A 566 REMARK 465 ILE A 567 REMARK 465 SER A 568 REMARK 465 ARG A 569 REMARK 465 MET B 1 REMARK 465 LYS B 59A REMARK 465 ASP B 59B REMARK 465 ASP B 59C REMARK 465 PRO B 59D REMARK 465 PRO B 59E REMARK 465 ASP B 59F REMARK 465 ASP B 59G REMARK 465 GLN B 137 REMARK 465 TRP B 138 REMARK 465 CYS B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 LYS B 142 REMARK 465 LYS C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 VAL C 22 REMARK 465 SER C 23 REMARK 465 HIS C 24 REMARK 465 TRP C 25 REMARK 465 GLN C 26 REMARK 465 GLN C 27 REMARK 465 GLN C 28 REMARK 465 SER C 29 REMARK 465 THR C 41 REMARK 465 THR C 42 REMARK 465 ALA C 43 REMARK 465 PRO C 44 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 135 OG REMARK 470 PRO A 136 CG CD REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 PRO B 2 CG CD REMARK 470 TYR C 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 136 N - CA - CB ANGL. DEV. = 7.4 DEGREES REMARK 500 LEU A 140 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 286 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 373 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 409 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 472 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 PHE A 478 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 528 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PRO B 2 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 37 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 75 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 137 58.15 -161.40 REMARK 500 ILE A 138 43.99 -157.62 REMARK 500 MET A 139 175.30 69.79 REMARK 500 LEU A 140 -5.51 -57.20 REMARK 500 GLN A 141 -73.40 -29.34 REMARK 500 LEU A 153 79.17 -108.26 REMARK 500 SER A 168 -37.64 156.11 REMARK 500 MET A 187 60.91 29.05 REMARK 500 LYS A 190 -62.58 -29.70 REMARK 500 ARG A 198 -5.28 -54.74 REMARK 500 THR A 199 -98.35 -135.03 REMARK 500 ASP A 200 101.63 -38.07 REMARK 500 SER A 201 -50.60 -19.96 REMARK 500 ARG A 210 78.51 21.23 REMARK 500 TRP A 212 -32.55 -29.73 REMARK 500 ASN A 229 -32.86 98.32 REMARK 500 ASP A 242 -71.38 -58.52 REMARK 500 ILE A 246 -75.86 -57.86 REMARK 500 SER A 248 -89.23 -79.82 REMARK 500 ASN A 249 -13.22 -46.15 REMARK 500 CYS A 252 -44.46 -140.71 REMARK 500 SER A 256 -25.25 -163.72 REMARK 500 LEU A 257 -65.38 51.35 REMARK 500 GLN A 258 79.61 42.88 REMARK 500 ARG A 263 -110.27 -133.81 REMARK 500 SER A 264 171.08 69.05 REMARK 500 GLU A 265 -133.26 -68.82 REMARK 500 THR A 266 -92.56 23.50 REMARK 500 SER A 267 -171.04 -65.80 REMARK 500 LYS A 268 70.44 -173.03 REMARK 500 GLN A 278 13.07 -155.54 REMARK 500 ASN A 287 -3.67 102.55 REMARK 500 ASN A 295 -70.89 -92.21 REMARK 500 TYR A 315 -100.91 -51.77 REMARK 500 ASP A 316 160.64 81.44 REMARK 500 GLU A 317 56.31 -99.61 REMARK 500 ARG A 318 -43.84 -173.46 REMARK 500 THR A 336 -130.06 -85.00 REMARK 500 LEU A 340 -83.15 -90.09 REMARK 500 ILE A 344 -91.08 -75.58 REMARK 500 HIS A 345 -65.24 51.12 REMARK 500 CYS A 347 47.84 -145.28 REMARK 500 GLU A 348 163.69 170.72 REMARK 500 ALA A 349 118.29 -39.80 REMARK 500 PHE A 355 -71.50 -127.31 REMARK 500 ASN A 356 142.92 22.48 REMARK 500 ASN A 357 -150.03 51.39 REMARK 500 ARG A 367 -4.29 83.16 REMARK 500 ASP A 379 -104.98 -92.38 REMARK 500 ILE A 380 110.06 68.84 REMARK 500 PHE A 422 137.56 -36.58 REMARK 500 ASP A 440 -92.19 40.47 REMARK 500 ARG A 464 132.98 -174.63 REMARK 500 PHE A 478 -134.93 -67.02 REMARK 500 ASP A 479 159.72 119.08 REMARK 500 ASP A 489 28.70 -77.62 REMARK 500 ARG A 513 138.13 -24.01 REMARK 500 PHE A 527 -167.23 -123.24 REMARK 500 ASP A 528 -156.45 -162.39 REMARK 500 HIS A 537 -89.22 -45.08 REMARK 500 ASP A 538 99.36 -28.45 REMARK 500 ASP A 539 75.32 -60.83 REMARK 500 SER B 3 88.51 167.79 REMARK 500 SER B 9 -17.04 -49.61 REMARK 500 GLU B 19 -25.74 98.99 REMARK 500 LYS B 22 -4.10 -47.80 REMARK 500 LEU B 31 -58.90 -120.93 REMARK 500 ASP B 33 -56.33 -129.58 REMARK 500 ASP B 37 -115.85 -45.17 REMARK 500 ASN B 45 145.88 -10.68 REMARK 500 HIS B 58 10.59 -56.74 REMARK 500 VAL B 66 -71.77 -99.24 REMARK 500 GLN B 76 -71.04 -16.30 REMARK 500 ALA B 85 -49.65 157.71 REMARK 500 ASP B 90 76.65 27.96 REMARK 500 LYS B 107 152.70 -43.46 REMARK 500 LYS B 109 155.57 -14.32 REMARK 500 THR B 110 120.97 56.68 REMARK 500 LYS B 116 -37.16 -38.80 REMARK 500 ASN B 119 -101.78 87.41 REMARK 500 ILE B 120 86.57 58.67 REMARK 500 LEU C 31 -108.02 -110.57 REMARK 500 ALA C 39 -104.97 72.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 274 TYR A 275 -147.26 REMARK 500 ASP A 397 PHE A 398 -140.84 REMARK 500 LEU A 436 GLN A 437 149.11 REMARK 500 VAL B 44 ASN B 45 148.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE REMARK 999 FOR SKP1, CHAIN B, WAS NOT REMARK 999 AVAILABLE AT THE TIME OF PROCESSING. DBREF 1P22 A 139 569 UNP Q9Y297 FBW1A_HUMAN 175 605 DBREF 1P22 B 2 142 UNP P63208 SKP1_HUMAN 1 162 DBREF 1P22 C 19 44 UNP P35222 CTNB1_HUMAN 19 44 SEQADV 1P22 SER A 135 UNP Q9Y297 CLONING ARTIFACT SEQADV 1P22 PRO A 136 UNP Q9Y297 CLONING ARTIFACT SEQADV 1P22 ALA A 137 UNP Q9Y297 CLONING ARTIFACT SEQADV 1P22 ILE A 138 UNP Q9Y297 CLONING ARTIFACT SEQADV 1P22 SEP C 33 UNP P35222 SER 33 MODIFIED RESIDUE SEQADV 1P22 SEP C 37 UNP P35222 SER 37 MODIFIED RESIDUE SEQRES 1 A 435 SER PRO ALA ILE MET LEU GLN ARG ASP PHE ILE THR ALA SEQRES 2 A 435 LEU PRO ALA ARG GLY LEU ASP HIS ILE ALA GLU ASN ILE SEQRES 3 A 435 LEU SER TYR LEU ASP ALA LYS SER LEU CYS ALA ALA GLU SEQRES 4 A 435 LEU VAL CYS LYS GLU TRP TYR ARG VAL THR SER ASP GLY SEQRES 5 A 435 MET LEU TRP LYS LYS LEU ILE GLU ARG MET VAL ARG THR SEQRES 6 A 435 ASP SER LEU TRP ARG GLY LEU ALA GLU ARG ARG GLY TRP SEQRES 7 A 435 GLY GLN TYR LEU PHE LYS ASN LYS PRO PRO ASP GLY ASN SEQRES 8 A 435 ALA PRO PRO ASN SER PHE TYR ARG ALA LEU TYR PRO LYS SEQRES 9 A 435 ILE ILE GLN ASP ILE GLU THR ILE GLU SER ASN TRP ARG SEQRES 10 A 435 CYS GLY ARG HIS SER LEU GLN ARG ILE HIS CYS ARG SER SEQRES 11 A 435 GLU THR SER LYS GLY VAL TYR CYS LEU GLN TYR ASP ASP SEQRES 12 A 435 GLN LYS ILE VAL SER GLY LEU ARG ASP ASN THR ILE LYS SEQRES 13 A 435 ILE TRP ASP LYS ASN THR LEU GLU CYS LYS ARG ILE LEU SEQRES 14 A 435 THR GLY HIS THR GLY SER VAL LEU CYS LEU GLN TYR ASP SEQRES 15 A 435 GLU ARG VAL ILE ILE THR GLY SER SER ASP SER THR VAL SEQRES 16 A 435 ARG VAL TRP ASP VAL ASN THR GLY GLU MET LEU ASN THR SEQRES 17 A 435 LEU ILE HIS HIS CYS GLU ALA VAL LEU HIS LEU ARG PHE SEQRES 18 A 435 ASN ASN GLY MET MET VAL THR CYS SER LYS ASP ARG SER SEQRES 19 A 435 ILE ALA VAL TRP ASP MET ALA SER PRO THR ASP ILE THR SEQRES 20 A 435 LEU ARG ARG VAL LEU VAL GLY HIS ARG ALA ALA VAL ASN SEQRES 21 A 435 VAL VAL ASP PHE ASP ASP LYS TYR ILE VAL SER ALA SER SEQRES 22 A 435 GLY ASP ARG THR ILE LYS VAL TRP ASN THR SER THR CYS SEQRES 23 A 435 GLU PHE VAL ARG THR LEU ASN GLY HIS LYS ARG GLY ILE SEQRES 24 A 435 ALA CYS LEU GLN TYR ARG ASP ARG LEU VAL VAL SER GLY SEQRES 25 A 435 SER SER ASP ASN THR ILE ARG LEU TRP ASP ILE GLU CYS SEQRES 26 A 435 GLY ALA CYS LEU ARG VAL LEU GLU GLY HIS GLU GLU LEU SEQRES 27 A 435 VAL ARG CYS ILE ARG PHE ASP ASN LYS ARG ILE VAL SER SEQRES 28 A 435 GLY ALA TYR ASP GLY LYS ILE LYS VAL TRP ASP LEU VAL SEQRES 29 A 435 ALA ALA LEU ASP PRO ARG ALA PRO ALA GLY THR LEU CYS SEQRES 30 A 435 LEU ARG THR LEU VAL GLU HIS SER GLY ARG VAL PHE ARG SEQRES 31 A 435 LEU GLN PHE ASP GLU PHE GLN ILE VAL SER SER SER HIS SEQRES 32 A 435 ASP ASP THR ILE LEU ILE TRP ASP PHE LEU ASN ASP PRO SEQRES 33 A 435 ALA ALA GLN ALA GLU PRO PRO ARG SER PRO SER ARG THR SEQRES 34 A 435 TYR THR TYR ILE SER ARG SEQRES 1 B 145 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 B 145 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 B 145 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP PRO VAL SEQRES 4 B 145 PRO LEU PRO ASN VAL ASN ALA ALA ILE LEU LYS LYS VAL SEQRES 5 B 145 ILE GLN TRP CYS THR HIS HIS LYS ASP ASP PRO PRO ASP SEQRES 6 B 145 ASP ILE PRO VAL TRP ASP GLN GLU PHE LEU LYS VAL ASP SEQRES 7 B 145 GLN GLY THR LEU PHE GLU LEU ILE LEU ALA ALA ASN TYR SEQRES 8 B 145 LEU ASP ILE LYS GLY LEU LEU ASP VAL THR CYS LYS THR SEQRES 9 B 145 VAL ALA ASN MET ILE LYS GLY LYS THR PRO GLU GLU ILE SEQRES 10 B 145 ARG LYS THR PHE ASN ILE LYS ASN ASP PHE THR GLU GLU SEQRES 11 B 145 GLU GLU ALA GLN VAL ARG LYS GLU ASN GLN TRP CYS GLU SEQRES 12 B 145 GLU LYS SEQRES 1 C 26 LYS ALA ALA VAL SER HIS TRP GLN GLN GLN SER TYR LEU SEQRES 2 C 26 ASP SEP GLY ILE HIS SEP GLY ALA THR THR THR ALA PRO MODRES 1P22 SEP C 33 SER PHOSPHOSERINE MODRES 1P22 SEP C 37 SER PHOSPHOSERINE HET SEP C 33 10 HET SEP C 37 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) HELIX 1 1 ASP A 143 LEU A 148 1 6 HELIX 2 2 PRO A 149 GLY A 152 5 4 HELIX 3 3 LEU A 153 SER A 162 1 10 HELIX 4 4 ASP A 165 CYS A 176 1 12 HELIX 5 5 CYS A 176 GLY A 186 1 11 HELIX 6 6 MET A 187 ARG A 198 1 12 HELIX 7 7 ASP A 200 ARG A 209 1 10 HELIX 8 8 GLY A 211 LEU A 216 5 6 HELIX 9 9 ASN A 229 TRP A 250 1 22 HELIX 10 10 LEU A 497 LEU A 501 1 5 HELIX 11 11 SER B 24 ASP B 33 1 10 HELIX 12 12 ASN B 45 THR B 57 1 13 HELIX 13 13 VAL B 66 LEU B 72 1 7 HELIX 14 14 ASP B 75 ASN B 87 1 13 HELIX 15 15 ILE B 91 MET B 105 1 15 HELIX 16 16 THR B 110 ASN B 119 1 10 HELIX 17 17 THR B 125 LYS B 134 1 10 SHEET 1 A 4 ILE A 260 HIS A 261 0 SHEET 2 A 4 THR A 540 TRP A 544 -1 O ILE A 541 N ILE A 260 SHEET 3 A 4 ILE A 532 SER A 534 -1 N SER A 534 O LEU A 542 SHEET 4 A 4 LEU A 525 PHE A 527 -1 N GLN A 526 O VAL A 533 SHEET 1 B 4 VAL A 270 GLN A 274 0 SHEET 2 B 4 LYS A 279 LEU A 284 -1 O VAL A 281 N GLN A 274 SHEET 3 B 4 ILE A 289 ASP A 293 -1 O LYS A 290 N SER A 282 SHEET 4 B 4 CYS A 299 LEU A 303 -1 O LYS A 300 N ILE A 291 SHEET 1 C 4 VAL A 310 GLN A 314 0 SHEET 2 C 4 VAL A 319 SER A 324 -1 O GLY A 323 N CYS A 312 SHEET 3 C 4 VAL A 329 ASP A 333 -1 O TRP A 332 N ILE A 320 SHEET 4 C 4 MET A 339 LEU A 343 -1 O LEU A 343 N VAL A 329 SHEET 1 D 4 VAL A 350 ARG A 354 0 SHEET 2 D 4 MET A 359 SER A 364 -1 O VAL A 361 N ARG A 354 SHEET 3 D 4 ILE A 369 ASP A 373 -1 O TRP A 372 N MET A 360 SHEET 4 D 4 THR A 381 LEU A 386 -1 O ARG A 384 N VAL A 371 SHEET 1 E 4 VAL A 393 ASP A 399 0 SHEET 2 E 4 TYR A 402 SER A 407 -1 O VAL A 404 N ASP A 397 SHEET 3 E 4 THR A 411 ASN A 416 -1 O TRP A 415 N ILE A 403 SHEET 4 E 4 PHE A 422 ASN A 427 -1 O LEU A 426 N ILE A 412 SHEET 1 F 4 ILE A 433 ARG A 439 0 SHEET 2 F 4 LEU A 442 SER A 447 -1 O LEU A 442 N ARG A 439 SHEET 3 F 4 ILE A 452 ASP A 456 -1 O TRP A 455 N VAL A 443 SHEET 4 F 4 CYS A 462 LEU A 466 -1 O LEU A 463 N LEU A 454 SHEET 1 G 4 VAL A 473 ARG A 477 0 SHEET 2 G 4 ARG A 482 ALA A 487 -1 O GLY A 486 N CYS A 475 SHEET 3 G 4 ILE A 492 ASP A 496 -1 O TRP A 495 N ILE A 483 SHEET 4 G 4 CYS A 511 LEU A 515 -1 O LEU A 515 N ILE A 492 SHEET 1 H 3 ILE B 13 VAL B 16 0 SHEET 2 H 3 ILE B 4 SER B 8 -1 N ILE B 4 O VAL B 16 SHEET 3 H 3 VAL B 39 LEU B 41 1 O VAL B 39 N GLN B 7 LINK C ASP C 32 N SEP C 33 1555 1555 1.31 LINK C SEP C 33 N GLY C 34 1555 1555 1.33 LINK C HIS C 36 N SEP C 37 1555 1555 1.32 LINK C SEP C 37 N GLY C 38 1555 1555 1.33 CRYST1 82.600 82.600 111.500 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012107 0.006990 0.000000 0.00000 SCALE2 0.000000 0.013979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008969 0.00000