HEADER TRANSFERASE/TRANSFERASE SUBSTRATE 23-APR-03 1P4N TITLE CRYSTAL STRUCTURE OF WEISSELLA VIRIDESCENS FEMX:UDP-MURNAC- TITLE 2 PENTAPEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FEMX; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.2.10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UDP-MURNAC-PENTAPEPTIDE; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEISSELLA VIRIDESCENS; SOURCE 3 ORGANISM_TAXID: 1629; SOURCE 4 GENE: FEMX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 12 ORGANISM_TAXID: 1280 KEYWDS FEMX, TRANSFERASE-TRANSFERASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BIARROTTE-SORIN,A.MAILLARD,J.DELETTRE,W.SOUGAKOFF,M.ARTHUR,C.MAYER REVDAT 7 16-AUG-23 1P4N 1 REMARK LINK REVDAT 6 01-AUG-12 1P4N 1 HEADER REMARK SITE REVDAT 5 27-JUL-11 1P4N 1 HETNAM HETSYN REMARK REVDAT 4 13-JUL-11 1P4N 1 VERSN REVDAT 3 24-FEB-09 1P4N 1 VERSN REVDAT 2 17-FEB-04 1P4N 1 MODRES REVDAT 1 10-FEB-04 1P4N 0 JRNL AUTH S.BIARROTTE-SORIN,A.P.MAILLARD,J.DELETTRE,W.SOUGAKOFF, JRNL AUTH 2 M.ARTHUR,C.MAYER JRNL TITL CRYSTAL STRUCTURES OF WEISSELLA VIRIDESCENS FEMX AND ITS JRNL TITL 2 COMPLEX WITH UDP-MURNAC-PENTAPEPTIDE: INSIGHTS INTO FEMABX JRNL TITL 3 FAMILY SUBSTRATES RECOGNITION. JRNL REF STRUCTURE V. 12 257 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 14962386 JRNL DOI 10.1016/J.STR.2004.01.006 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1090877.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 27014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1351 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4207 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.900 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.480 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.600 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 54.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000019001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979711 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI (111) REMARK 200 OPTICS : TWO CRYSTALS MONOCHROMATOR REMARK 200 BETWEEN TWO CYLINDRICAL REMARK 200 PARABOLIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 15.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1NE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2K, NACL, SODIUM CACODYLATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.30500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 79 -177.36 171.44 REMARK 500 ASN A 130 -104.00 -145.78 REMARK 500 ASN A 187 45.61 -143.63 REMARK 500 DAL B 339 139.65 128.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN THE RESIDUE FGA IS GAMMA-GLUTAMIC ACID BUT DOES NOT REMARK 600 MAKE CLASSICAL PEPTIDE BOND. IT MAKES PEPTIDE BOND ON THE SIDE REMARK 600 CHAIN AT THE CGAMMA. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 582 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 64 O REMARK 620 2 THR A 66 O 85.9 REMARK 620 3 HOH A 706 O 88.4 173.5 REMARK 620 4 HOH A 707 O 169.2 103.6 81.8 REMARK 620 5 HOH A 777 O 89.7 86.2 90.6 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 683 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 280 O REMARK 620 2 ASN A 283 OD1 102.9 REMARK 620 3 HOH A 498 O 88.9 167.9 REMARK 620 4 HOH A 499 O 163.8 77.3 90.6 REMARK 620 5 HOH A 502 O 92.0 76.7 105.7 103.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 308 O REMARK 620 2 HOH A 522 O 114.3 REMARK 620 3 HOH A 523 O 133.7 107.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 683 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF UDP-MURNAC REMARK 800 -PENTAPEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NE9 RELATED DB: PDB REMARK 900 APOPROTEIN DBREF 1P4N A 1 335 GB 11999275 AAG21689 2 336 DBREF 1P4N B 336 340 PDB 1P4N 1P4N 336 340 SEQRES 1 A 335 PRO VAL LEU ASN LEU ASN ASP PRO GLN ALA VAL GLU ARG SEQRES 2 A 335 TYR GLU GLU PHE MET ARG GLN SER PRO TYR GLY GLN VAL SEQRES 3 A 335 THR GLN ASP LEU GLY TRP ALA LYS VAL LYS ASN ASN TRP SEQRES 4 A 335 GLU PRO VAL ASP VAL TYR LEU GLU ASP ASP GLN GLY ALA SEQRES 5 A 335 ILE ILE ALA ALA MET SER MET LEU LEU GLY ASP THR PRO SEQRES 6 A 335 THR ASP LYS LYS PHE ALA TYR ALA SER LYS GLY PRO VAL SEQRES 7 A 335 MET ASP VAL THR ASP VAL ASP LEU LEU ASP ARG LEU VAL SEQRES 8 A 335 ASP GLU ALA VAL LYS ALA LEU ASP GLY ARG ALA TYR VAL SEQRES 9 A 335 LEU ARG PHE ASP PRO GLU VAL ALA TYR SER ASP GLU PHE SEQRES 10 A 335 ASN THR THR LEU GLN ASP HIS GLY TYR VAL THR ARG ASN SEQRES 11 A 335 ARG ASN VAL ALA ASP ALA GLY MET HIS ALA THR ILE GLN SEQRES 12 A 335 PRO ARG LEU ASN MET VAL LEU ASP LEU THR LYS PHE PRO SEQRES 13 A 335 ASP ALA LYS THR THR LEU ASP LEU TYR PRO SER LYS THR SEQRES 14 A 335 LYS SER LYS ILE LYS ARG PRO PHE ARG ASP GLY VAL GLU SEQRES 15 A 335 VAL HIS SER GLY ASN SER ALA THR GLU LEU ASP GLU PHE SEQRES 16 A 335 PHE LYS THR TYR THR THR MET ALA GLU ARG HIS GLY ILE SEQRES 17 A 335 THR HIS ARG PRO ILE GLU TYR PHE GLN ARG MET GLN ALA SEQRES 18 A 335 ALA PHE ASP ALA ASP THR MET ARG ILE PHE VAL ALA GLU SEQRES 19 A 335 ARG GLU GLY LYS LEU LEU SER THR GLY ILE ALA LEU LYS SEQRES 20 A 335 TYR GLY ARG LYS ILE TRP TYR MET TYR ALA GLY SER MET SEQRES 21 A 335 ASP GLY ASN THR TYR TYR ALA PRO TYR ALA VAL GLN SER SEQRES 22 A 335 GLU MET ILE GLN TRP ALA LEU ASP THR ASN THR ASP LEU SEQRES 23 A 335 TYR ASP LEU GLY GLY ILE GLU SER GLU SER THR ASP ASP SEQRES 24 A 335 SER LEU TYR VAL PHE LYS HIS VAL PHE VAL LYS ASP ALA SEQRES 25 A 335 PRO ARG GLU TYR ILE GLY GLU ILE ASP LYS VAL LEU ASP SEQRES 26 A 335 PRO GLU VAL TYR ALA GLU LEU VAL LYS ASP SEQRES 1 B 5 UMA FGA LYS DAL DAL MODRES 1P4N UMA B 336 ALA HET UMA B 336 48 HET FGA B 337 8 HET DAL B 339 5 HET DAL B 340 6 HET MG A 401 1 HET MG A 582 1 HET MG A 683 1 HET GOL A 341 6 HET GOL A 342 6 HETNAM UMA URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE HETNAM FGA GAMMA-D-GLUTAMIC ACID HETNAM DAL D-ALANINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN FGA D-GLUTAMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UMA C23 H36 N4 O20 P2 FORMUL 2 FGA C5 H9 N O4 FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 3 MG 3(MG 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *466(H2 O) HELIX 1 1 ASP A 7 SER A 21 1 15 HELIX 2 3 ASP A 29 LYS A 36 1 8 HELIX 3 4 ASP A 83 ASP A 99 1 17 HELIX 4 5 SER A 114 HIS A 124 1 11 HELIX 5 6 THR A 153 PHE A 155 5 3 HELIX 6 7 THR A 160 TYR A 165 5 6 HELIX 7 8 PRO A 166 ASP A 179 1 14 HELIX 8 9 SER A 188 GLY A 207 1 20 HELIX 9 10 PRO A 212 PHE A 223 1 12 HELIX 10 11 TYR A 266 THR A 282 1 17 HELIX 11 12 ASP A 299 VAL A 309 1 11 HELIX 12 13 ASP A 325 VAL A 333 1 9 SHEET 1 A 6 GLU A 40 GLU A 47 0 SHEET 2 A 6 ILE A 53 GLY A 62 -1 O ILE A 54 N LEU A 46 SHEET 3 A 6 LYS A 69 ALA A 73 -1 O PHE A 70 N GLY A 62 SHEET 4 A 6 ALA A 102 PHE A 107 1 O ARG A 106 N ALA A 73 SHEET 5 A 6 GLU A 319 VAL A 323 -1 O LYS A 322 N LEU A 105 SHEET 6 A 6 VAL A 127 ARG A 129 -1 N VAL A 127 O ASP A 321 SHEET 1 B 7 VAL A 181 GLY A 186 0 SHEET 2 B 7 MET A 228 ARG A 235 -1 O ILE A 230 N GLY A 186 SHEET 3 B 7 LYS A 238 TYR A 248 -1 O GLY A 243 N PHE A 231 SHEET 4 B 7 LYS A 251 SER A 259 -1 O TRP A 253 N LEU A 246 SHEET 5 B 7 LEU A 286 GLY A 291 1 O ASP A 288 N ILE A 252 SHEET 6 B 7 LEU A 146 ASP A 151 -1 N LEU A 150 O TYR A 287 SHEET 7 B 7 ARG A 314 GLU A 315 -1 O ARG A 314 N ASN A 147 LINK C22 UMA B 336 N FGA B 337 1555 1555 1.33 LINK CD FGA B 337 N LYS B 338 1555 1555 1.33 LINK C LYS B 338 N DAL B 339 1555 1555 1.33 LINK C DAL B 339 N DAL B 340 1555 1555 1.33 LINK O THR A 64 MG MG A 582 1555 1555 2.56 LINK O THR A 66 MG MG A 582 1555 1555 2.43 LINK O LEU A 280 MG MG A 683 1555 1555 2.46 LINK OD1 ASN A 283 MG MG A 683 1555 1555 2.58 LINK O PHE A 308 MG MG A 401 1555 1555 2.91 LINK MG MG A 401 O HOH A 522 1555 1555 2.82 LINK MG MG A 401 O HOH A 523 1555 1555 2.65 LINK O HOH A 498 MG MG A 683 1555 1555 2.53 LINK O HOH A 499 MG MG A 683 1555 1555 2.68 LINK O HOH A 502 MG MG A 683 1555 1555 2.74 LINK MG MG A 582 O HOH A 706 1555 1555 2.59 LINK MG MG A 582 O HOH A 707 1555 1555 2.70 LINK MG MG A 582 O HOH A 777 1555 1555 2.59 CISPEP 1 GLY A 76 PRO A 77 0 -0.36 SITE 1 AC1 7 LEU A 150 TYR A 165 PHE A 308 VAL A 309 SITE 2 AC1 7 LYS A 310 HOH A 522 HOH A 523 SITE 1 AC2 5 THR A 64 THR A 66 HOH A 706 HOH A 707 SITE 2 AC2 5 HOH A 777 SITE 1 AC3 6 LEU A 280 ASN A 283 HOH A 498 HOH A 499 SITE 2 AC3 6 HOH A 502 HOH A 642 SITE 1 AC4 10 PHE A 17 ILE A 54 MET A 79 ASP A 80 SITE 2 AC4 10 LEU A 86 ILE A 213 GLU A 214 HOH A 362 SITE 3 AC4 10 HOH A 540 HOH A 542 SITE 1 AC5 7 TYR A 254 LEU A 289 LEU A 301 LYS A 305 SITE 2 AC5 7 HOH A 419 HOH A 623 HOH A 803 SITE 1 AC6 32 LYS A 36 ASN A 38 TRP A 39 THR A 64 SITE 2 AC6 32 PHE A 70 ASP A 85 TYR A 103 ARG A 106 SITE 3 AC6 32 ILE A 142 GLN A 143 ILE A 208 THR A 209 SITE 4 AC6 32 ARG A 211 TYR A 215 MET A 255 TYR A 256 SITE 5 AC6 32 HOH A 411 HOH A 543 HOH A 665 HOH A 669 SITE 6 AC6 32 HOH B 407 HOH B 408 HOH B 412 HOH B 413 SITE 7 AC6 32 HOH B 414 HOH B 430 HOH B 671 HOH B 672 SITE 8 AC6 32 HOH B 701 HOH B 703 HOH B 773 HOH B 774 CRYST1 42.201 100.610 46.538 90.00 115.64 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023696 0.000000 0.011374 0.00000 SCALE2 0.000000 0.009939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023835 0.00000