HEADER TRANSFERASE 30-APR-03 1P6S TITLE SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN PROTEIN TITLE 2 KINASE B BETA (PKB/AKT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-BETA SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN (RESIDUES 1-111); COMPND 5 SYNONYM: RAC-PK-BETA, PROTEIN KINASE AKT-2, PROTEIN KINASE B, BETA, COMPND 6 PKB BETA; COMPND 7 EC: 2.7.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS PLECKSTRIN HOMOLOGY DOMAIN, PKB, AKT, SIGNAL TRANSDUCTION, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.AUGUIN,P.BARTHE,M.T.AUGE-SENEGAS,M.H.STERN,M.NOGUCHI,C.ROUMESTAND REVDAT 3 23-FEB-22 1P6S 1 REMARK REVDAT 2 24-FEB-09 1P6S 1 VERSN REVDAT 1 18-MAY-04 1P6S 0 JRNL AUTH D.AUGUIN,P.BARTHE,M.T.AUGE-SENEGAS,M.H.STERN,M.NOGUCHI, JRNL AUTH 2 C.ROUMESTAND JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE PLECKSTRIN JRNL TITL 2 HOMOLOGY DOMAIN OF THE HUMAN PROTEIN KINASE B (PKB/AKT). JRNL TITL 3 INTERACTION WITH INOSITOL PHOSPHATES. JRNL REF J.BIOMOL.NMR V. 28 137 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 14755158 JRNL DOI 10.1023/B:JNMR.0000013836.62154.C2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GIFA 4.4, XPLOR 3.8 REMARK 3 AUTHORS : PONS (GIFA), BRUNGER (XPLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1229 RESTRAINTS, 1034 ARE REMARK 3 NOE-DERIVED DISTANCE CONSTRAINTS, 127 DIHEDRAL ANGLE RESTRAINTS, REMARK 3 68 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. THERE ARE NO REMARK 3 CONSTRAINTS REMARK 3 FOR THE TWO PEPTIDIC SEGMENTS: E59-Q61 AND R76-T87. REMARK 4 REMARK 4 1P6S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019078. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 286; 286 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : 0.3; 0.3 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM PKBBETA-PH U-15N,13C; 10MM REMARK 210 TRIS-HCL; 300MM NACL; 0.1MM REMARK 210 BENZAMIDINE; 0.1MM EDTA; 4MM REMARK 210 INOSITOL-1,4,5-TRISPHOSPHATE; 90% REMARK 210 H2O, 10% D2O; 0.4MM PKBBETA-PH REMARK 210 U-15N; 10MM TRIS-HCL; 300MM NACL; REMARK 210 0.1MM BENZAMIDINE; 0.1MM EDTA; REMARK 210 4MM INOSITOL-1,4,5-TRISPHOSPHATE; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CINDY 1.5, XPLOR 3.8 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 43.09 -162.48 REMARK 500 1 ILE A 19 -160.96 -108.08 REMARK 500 1 GLU A 40 -156.58 -124.76 REMARK 500 1 ARG A 41 67.26 -117.94 REMARK 500 1 GLU A 43 39.92 -167.38 REMARK 500 1 CYS A 60 -163.37 57.50 REMARK 500 1 ARG A 76 72.10 -119.78 REMARK 500 1 CYS A 77 95.62 -163.80 REMARK 500 1 GLN A 79 -65.96 -106.34 REMARK 500 1 TRP A 80 64.52 -157.32 REMARK 500 2 GLU A 3 53.90 -106.26 REMARK 500 2 GLU A 17 -137.80 -127.86 REMARK 500 2 LYS A 20 59.53 -94.14 REMARK 500 2 ARG A 41 100.97 -45.58 REMARK 500 2 GLU A 43 -49.93 -132.63 REMARK 500 2 ALA A 44 165.74 65.07 REMARK 500 2 ASP A 46 -67.82 -121.36 REMARK 500 2 GLN A 47 64.03 -172.85 REMARK 500 2 THR A 48 53.45 -117.07 REMARK 500 2 ARG A 76 -67.01 -99.33 REMARK 500 2 CYS A 77 -163.59 55.19 REMARK 500 2 LEU A 78 -130.32 -139.15 REMARK 500 2 GLN A 79 166.35 65.91 REMARK 500 2 THR A 81 -71.52 66.83 REMARK 500 2 VAL A 83 48.89 -160.31 REMARK 500 2 ARG A 86 -54.30 -157.19 REMARK 500 3 GLU A 17 -62.67 -166.45 REMARK 500 3 TYR A 18 -38.60 -143.06 REMARK 500 3 GLU A 40 -156.68 -134.22 REMARK 500 3 ALA A 44 157.02 68.80 REMARK 500 3 ASP A 46 -73.81 -118.18 REMARK 500 3 GLN A 47 43.16 -164.51 REMARK 500 3 THR A 48 54.69 -102.69 REMARK 500 3 VAL A 57 114.24 -173.20 REMARK 500 3 ALA A 58 70.10 -64.88 REMARK 500 3 GLU A 59 60.73 32.02 REMARK 500 3 THR A 82 75.48 60.40 REMARK 500 4 GLU A 40 134.85 -179.76 REMARK 500 4 ARG A 41 166.79 172.56 REMARK 500 4 ALA A 44 162.90 68.95 REMARK 500 4 ASP A 46 -99.74 -100.91 REMARK 500 4 GLN A 47 62.07 -171.58 REMARK 500 4 THR A 48 51.50 -102.75 REMARK 500 4 LEU A 52 -56.73 -133.56 REMARK 500 4 ARG A 76 -85.75 -112.15 REMARK 500 4 THR A 82 -53.50 -129.40 REMARK 500 4 GLU A 85 38.13 -94.67 REMARK 500 4 ARG A 86 52.64 -104.85 REMARK 500 5 GLU A 17 -161.74 -128.41 REMARK 500 5 GLU A 40 -158.73 -156.94 REMARK 500 REMARK 500 THIS ENTRY HAS 222 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1P6S A 1 111 UNP P31751 AKT2_HUMAN 1 111 SEQRES 1 A 111 MET ASN GLU VAL SER VAL ILE LYS GLU GLY TRP LEU HIS SEQRES 2 A 111 LYS ARG GLY GLU TYR ILE LYS THR TRP ARG PRO ARG TYR SEQRES 3 A 111 PHE LEU LEU LYS SER ASP GLY SER PHE ILE GLY TYR LYS SEQRES 4 A 111 GLU ARG PRO GLU ALA PRO ASP GLN THR LEU PRO PRO LEU SEQRES 5 A 111 ASN ASN PHE SER VAL ALA GLU CYS GLN LEU MET LYS THR SEQRES 6 A 111 GLU ARG PRO ARG PRO ASN THR PHE VAL ILE ARG CYS LEU SEQRES 7 A 111 GLN TRP THR THR VAL ILE GLU ARG THR PHE HIS VAL ASP SEQRES 8 A 111 SER PRO ASP GLU ARG GLU GLU TRP MET ARG ALA ILE GLN SEQRES 9 A 111 MET VAL ALA ASN SER LEU LYS HELIX 1 1 SER A 92 LYS A 111 1 20 SHEET 1 A 7 ASN A 53 SER A 56 0 SHEET 2 A 7 SER A 34 TYR A 38 -1 N PHE A 35 O PHE A 55 SHEET 3 A 7 TRP A 22 LYS A 30 -1 N LEU A 28 O ILE A 36 SHEET 4 A 7 VAL A 6 ARG A 15 -1 N LYS A 8 O LEU A 29 SHEET 5 A 7 THR A 87 VAL A 90 -1 O HIS A 89 N HIS A 13 SHEET 6 A 7 THR A 72 ILE A 75 -1 N PHE A 73 O PHE A 88 SHEET 7 A 7 LEU A 62 THR A 65 -1 N MET A 63 O VAL A 74 SSBOND 1 CYS A 60 CYS A 77 1555 1555 2.02 CISPEP 1 ARG A 67 PRO A 68 1 -0.17 CISPEP 2 ARG A 67 PRO A 68 2 -0.25 CISPEP 3 ARG A 67 PRO A 68 3 0.03 CISPEP 4 ARG A 67 PRO A 68 4 0.37 CISPEP 5 ARG A 67 PRO A 68 5 -0.10 CISPEP 6 ARG A 67 PRO A 68 6 0.26 CISPEP 7 ARG A 67 PRO A 68 7 -0.31 CISPEP 8 ARG A 67 PRO A 68 8 0.21 CISPEP 9 ARG A 67 PRO A 68 9 0.09 CISPEP 10 ARG A 67 PRO A 68 10 -0.31 CISPEP 11 ARG A 67 PRO A 68 11 -0.17 CISPEP 12 ARG A 67 PRO A 68 12 -0.15 CISPEP 13 ARG A 67 PRO A 68 13 0.16 CISPEP 14 ARG A 67 PRO A 68 14 -0.21 CISPEP 15 ARG A 67 PRO A 68 15 0.47 CISPEP 16 ARG A 67 PRO A 68 16 0.21 CISPEP 17 ARG A 67 PRO A 68 17 0.20 CISPEP 18 ARG A 67 PRO A 68 18 0.09 CISPEP 19 ARG A 67 PRO A 68 19 0.03 CISPEP 20 ARG A 67 PRO A 68 20 -0.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1