data_1P79 # _entry.id 1P79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P79 pdb_00001p79 10.2210/pdb1p79/pdb NDB UR0031 ? ? RCSB RCSB019095 ? ? WWPDB D_1000019095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-04 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr1_symmetry' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_symmetry' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P79 _pdbx_database_status.recvd_initial_deposition_date 2003-04-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pan, B.' 1 'Xiong, Y.' 2 'Shi, K.' 3 'Sundaralingam, M.' 4 # _citation.id primary _citation.title 'Crystal Structure of a Bulged RNA Tetraplex at 1.1 A Resolution: Implications for a Novel Binding Site in RNA Tetraplex' _citation.journal_abbrev STRUCTURE _citation.journal_volume 11 _citation.page_first 1423 _citation.page_last 1430 _citation.year 2003 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14604532 _citation.pdbx_database_id_DOI 10.1016/j.str.2003.09.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pan, B.' 1 ? primary 'Xiong, Y.' 2 ? primary 'Shi, K.' 3 ? primary 'Sundaralingam, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*GP*UP*GP*GP*U)-3'" 1909.157 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UGUGGU _entity_poly.pdbx_seq_one_letter_code_can UGUGGU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 201 201 K K A . C 2 K 1 202 202 K K A . D 2 K 1 203 203 K K A . E 3 HOH 1 101 101 HOH HOH A . E 3 HOH 2 102 102 HOH HOH A . E 3 HOH 3 103 103 HOH HOH A . E 3 HOH 4 104 104 HOH HOH A . E 3 HOH 5 105 105 HOH HOH A . E 3 HOH 6 106 106 HOH HOH A . E 3 HOH 7 107 107 HOH HOH A . E 3 HOH 8 108 108 HOH HOH A . E 3 HOH 9 109 109 HOH HOH A . E 3 HOH 10 110 110 HOH HOH A . E 3 HOH 11 111 111 HOH HOH A . E 3 HOH 12 112 112 HOH HOH A . E 3 HOH 13 113 113 HOH HOH A . E 3 HOH 14 114 114 HOH HOH A . E 3 HOH 15 115 115 HOH HOH A . E 3 HOH 16 116 116 HOH HOH A . E 3 HOH 17 117 117 HOH HOH A . E 3 HOH 18 118 118 HOH HOH A . E 3 HOH 19 119 119 HOH HOH A . E 3 HOH 20 120 120 HOH HOH A . E 3 HOH 21 121 121 HOH HOH A . E 3 HOH 22 122 122 HOH HOH A . E 3 HOH 23 123 123 HOH HOH A . E 3 HOH 24 124 124 HOH HOH A . E 3 HOH 25 125 125 HOH HOH A . E 3 HOH 26 126 126 HOH HOH A . E 3 HOH 27 127 127 HOH HOH A . E 3 HOH 28 128 128 HOH HOH A . E 3 HOH 29 129 129 HOH HOH A . E 3 HOH 30 130 130 HOH HOH A . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id G _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 2 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O2'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id G _pdbx_unobs_or_zero_occ_atoms.label_seq_id 2 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O2'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1P79 _cell.length_a 35.014 _cell.length_b 35.014 _cell.length_c 22.257 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1P79 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1P79 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 31.15 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'spermine, potassium chloride, MPD, cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 spermine ? ? ? 1 2 1 'potassium chloride' ? ? ? 1 3 1 MPD ? ? ? 1 4 1 cacodylate ? ? ? 1 5 2 'potassium chloride' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-08-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8985 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8985 # _reflns.entry_id 1P79 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 16.55 _reflns.number_all ? _reflns.number_obs 5690 _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 23 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.14 _reflns_shell.percent_possible_all 71.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.088 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 770 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1P79 _refine.ls_number_reflns_obs 5382 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.55 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 94.82 _refine.ls_R_factor_obs 0.12733 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12678 _refine.ls_R_factor_R_free 0.13607 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 308 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 6.497 _refine.aniso_B[1][1] -0.26 _refine.aniso_B[2][2] -0.26 _refine.aniso_B[3][3] 0.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'extra hydrogen on G 2 of chain A was removed. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.027 _refine.pdbx_overall_ESU_R_Free 0.025 _refine.overall_SU_ML 0.013 _refine.overall_SU_B 0.242 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 162 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 255 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 16.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 120 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 43 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.607 3.000 ? 185 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.098 3.000 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.123 0.200 ? 19 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.032 0.020 ? 54 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.412 0.200 ? 24 'X-RAY DIFFRACTION' ? r_nbd_other 0.196 0.200 ? 39 'X-RAY DIFFRACTION' ? r_nbtor_other 0.096 0.200 ? 29 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.121 0.200 ? 20 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.752 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.346 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.099 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.539 3.000 ? 120 'X-RAY DIFFRACTION' ? r_scangle_it 2.065 4.500 ? 185 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 0.855 2.000 ? 120 'X-RAY DIFFRACTION' ? r_sphericity_free 8.627 5.000 ? 34 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.673 5.000 ? 108 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.160 _refine_ls_shell.number_reflns_R_work 589 _refine_ls_shell.R_factor_R_work 0.08 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.11 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1P79 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1P79 _struct.title 'Crystal structure of a bulged RNA tetraplex: implications for a novel binding site in RNA tetraplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P79 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, TETRAPLEX, BULGE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1P79 _struct_ref.pdbx_db_accession 1P79 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1P79 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1P79 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 22.2570000000 3 'crystal symmetry operation' 6_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 17.5070000000 0.0000000000 -1.0000000000 0.0000000000 17.5070000000 0.0000000000 0.0000000000 -1.0000000000 22.2570000000 4 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 17.5070000000 1.0000000000 0.0000000000 0.0000000000 17.5070000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 2 O6 ? ? ? 1_555 D K . K ? ? A G 2 A K 203 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc2 metalc ? ? A G 2 O6 ? ? ? 2_565 D K . K ? ? A G 2 A K 203 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc3 metalc ? ? A G 2 O6 ? ? ? 3_555 D K . K ? ? A G 2 A K 203 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc4 metalc ? ? A G 2 O6 ? ? ? 4_455 D K . K ? ? A G 2 A K 203 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc5 metalc ? ? A G 4 O6 ? ? ? 1_555 C K . K ? ? A G 4 A K 202 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc6 metalc ? ? A G 4 O6 ? ? ? 4_455 C K . K ? ? A G 4 A K 202 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc7 metalc ? ? A G 4 O6 ? ? ? 2_565 C K . K ? ? A G 4 A K 202 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc8 metalc ? ? A G 4 O6 ? ? ? 3_555 C K . K ? ? A G 4 A K 202 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc9 metalc ? ? A G 4 O6 ? ? ? 1_555 D K . K ? ? A G 4 A K 203 1_555 ? ? ? ? ? ? ? 2.949 ? ? metalc10 metalc ? ? A G 4 O6 ? ? ? 4_455 D K . K ? ? A G 4 A K 203 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc11 metalc ? ? A G 4 O6 ? ? ? 2_565 D K . K ? ? A G 4 A K 203 1_555 ? ? ? ? ? ? ? 2.951 ? ? metalc12 metalc ? ? A G 4 O6 ? ? ? 3_555 D K . K ? ? A G 4 A K 203 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc13 metalc ? ? A G 5 O6 ? ? ? 1_555 B K . K ? ? A G 5 A K 201 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc14 metalc ? ? A G 5 O6 ? ? ? 4_455 B K . K ? ? A G 5 A K 201 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc15 metalc ? ? A G 5 O6 ? ? ? 2_565 B K . K ? ? A G 5 A K 201 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc16 metalc ? ? A G 5 O6 ? ? ? 3_555 B K . K ? ? A G 5 A K 201 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc17 metalc ? ? A G 5 O6 ? ? ? 1_555 C K . K ? ? A G 5 A K 202 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc18 metalc ? ? A G 5 O6 ? ? ? 4_455 C K . K ? ? A G 5 A K 202 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc19 metalc ? ? A G 5 O6 ? ? ? 2_565 C K . K ? ? A G 5 A K 202 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc20 metalc ? ? A G 5 O6 ? ? ? 3_555 C K . K ? ? A G 5 A K 202 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc21 metalc ? ? A U 6 O4 ? ? ? 1_555 B K . K ? ? A U 6 A K 201 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc22 metalc ? ? A U 6 O4 ? ? ? 2_565 B K . K ? ? A U 6 A K 201 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc23 metalc ? ? A U 6 O4 ? ? ? 3_555 B K . K ? ? A U 6 A K 201 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc24 metalc ? ? A U 6 O4 ? ? ? 4_455 B K . K ? ? A U 6 A K 201 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc25 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 201 A K 202 1_555 ? ? ? ? ? ? ? 3.396 ? ? metalc26 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 201 A K 202 2_565 ? ? ? ? ? ? ? 3.396 ? ? metalc27 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 201 A K 202 3_555 ? ? ? ? ? ? ? 3.396 ? ? metalc28 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 201 A K 202 4_455 ? ? ? ? ? ? ? 3.396 ? ? metalc29 metalc ? ? C K . K ? ? ? 1_555 D K . K ? ? A K 202 A K 203 1_555 ? ? ? ? ? ? ? 3.413 ? ? metalc30 metalc ? ? C K . K ? ? ? 1_555 D K . K ? ? A K 202 A K 203 2_565 ? ? ? ? ? ? ? 3.413 ? ? metalc31 metalc ? ? C K . K ? ? ? 1_555 D K . K ? ? A K 202 A K 203 3_555 ? ? ? ? ? ? ? 3.413 ? ? metalc32 metalc ? ? C K . K ? ? ? 1_555 D K . K ? ? A K 202 A K 203 4_455 ? ? ? ? ? ? ? 3.413 ? ? hydrog1 hydrog ? ? A G 2 N7 ? ? ? 1_555 A G 2 N2 ? ? A G 2 A G 2 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A G 2 N1 ? ? A G 2 A G 2 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 4 N1 ? ? ? 1_555 A G 4 O6 ? ? A G 4 A G 4 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 4 N2 ? ? ? 1_555 A G 4 N7 ? ? A G 4 A G 4 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 5 N1 ? ? ? 1_555 A G 5 O6 ? ? A G 5 A G 5 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 5 N2 ? ? ? 1_555 A G 5 N7 ? ? A G 5 A G 5 4_455 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A U 6 O4 ? ? ? 1_555 A U 6 N3 ? ? A U 6 A U 6 4_455 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 2_565 125.2 ? 2 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 3_555 77.8 ? 3 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 3_555 77.8 ? 4 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 4_455 77.8 ? 5 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 4_455 77.8 ? 6 O6 ? A G 2 ? A G 2 ? 3_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 2 ? A G 2 ? 4_455 125.2 ? 7 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 68.9 ? 8 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 161.2 ? 9 O6 ? A G 2 ? A G 2 ? 3_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 95.3 ? 10 O6 ? A G 2 ? A G 2 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 119.7 ? 11 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 95.3 ? 12 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 119.6 ? 13 O6 ? A G 2 ? A G 2 ? 3_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 161.3 ? 14 O6 ? A G 2 ? A G 2 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 68.9 ? 15 O6 ? A G 4 ? A G 4 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 66.0 ? 16 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 161.2 ? 17 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 68.9 ? 18 O6 ? A G 2 ? A G 2 ? 3_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 119.7 ? 19 O6 ? A G 2 ? A G 2 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 95.3 ? 20 O6 ? A G 4 ? A G 4 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 100.7 ? 21 O6 ? A G 4 ? A G 4 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 66.0 ? 22 O6 ? A G 2 ? A G 2 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 119.7 ? 23 O6 ? A G 2 ? A G 2 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 95.3 ? 24 O6 ? A G 2 ? A G 2 ? 3_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 68.9 ? 25 O6 ? A G 2 ? A G 2 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 161.2 ? 26 O6 ? A G 4 ? A G 4 ? 1_555 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 66.0 ? 27 O6 ? A G 4 ? A G 4 ? 4_455 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 100.7 ? 28 O6 ? A G 4 ? A G 4 ? 2_565 K ? D K . ? A K 203 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 66.0 ? 29 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 4_455 71.8 ? 30 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 112.0 ? 31 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 2_565 71.8 ? 32 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 71.8 ? 33 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 112.0 ? 34 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 4 ? A G 4 ? 3_555 71.8 ? 35 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 73.6 ? 36 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 89.6 ? 37 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 156.6 ? 38 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 129.9 ? 39 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 129.9 ? 40 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 73.6 ? 41 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 89.6 ? 42 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 156.6 ? 43 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 71.1 ? 44 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 156.6 ? 45 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 129.9 ? 46 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 73.6 ? 47 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 89.6 ? 48 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 110.7 ? 49 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 71.1 ? 50 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 89.6 ? 51 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 156.6 ? 52 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 129.9 ? 53 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 73.6 ? 54 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 71.1 ? 55 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 110.7 ? 56 O6 ? A G 5 ? A G 5 ? 2_565 K ? C K . ? A K 202 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 71.1 ? 57 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 56.0 ? 58 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 56.0 ? 59 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 56.0 ? 60 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 56.0 ? 61 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 124.6 ? 62 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 124.7 ? 63 O6 ? A G 5 ? A G 5 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 124.7 ? 64 O6 ? A G 5 ? A G 5 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 1_555 124.7 ? 65 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 56.0 ? 66 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 56.0 ? 67 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 56.0 ? 68 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 56.0 ? 69 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 124.7 ? 70 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 124.7 ? 71 O6 ? A G 5 ? A G 5 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 124.6 ? 72 O6 ? A G 5 ? A G 5 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 124.7 ? 73 K ? D K . ? A K 203 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 2_565 0.0 ? 74 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 56.0 ? 75 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 56.0 ? 76 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 56.0 ? 77 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 56.0 ? 78 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 124.7 ? 79 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 124.7 ? 80 O6 ? A G 5 ? A G 5 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 124.7 ? 81 O6 ? A G 5 ? A G 5 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 124.6 ? 82 K ? D K . ? A K 203 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 0.0 ? 83 K ? D K . ? A K 203 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 3_555 0.0 ? 84 O6 ? A G 4 ? A G 4 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 56.0 ? 85 O6 ? A G 4 ? A G 4 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 56.0 ? 86 O6 ? A G 4 ? A G 4 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 56.0 ? 87 O6 ? A G 4 ? A G 4 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 56.0 ? 88 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 124.7 ? 89 O6 ? A G 5 ? A G 5 ? 4_455 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 124.6 ? 90 O6 ? A G 5 ? A G 5 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 124.7 ? 91 O6 ? A G 5 ? A G 5 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 124.7 ? 92 K ? D K . ? A K 203 ? 1_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 0.0 ? 93 K ? D K . ? A K 203 ? 2_565 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 0.0 ? 94 K ? D K . ? A K 203 ? 3_555 K ? C K . ? A K 202 ? 1_555 K ? D K . ? A K 203 ? 4_455 0.0 ? 95 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 4_455 67.1 ? 96 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 102.9 ? 97 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 2_565 67.1 ? 98 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 67.1 ? 99 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 102.9 ? 100 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 O6 ? A G 5 ? A G 5 ? 3_555 67.1 ? 101 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 67.1 ? 102 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 97.6 ? 103 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 164.5 ? 104 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 116.2 ? 105 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 2_565 164.5 ? 106 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 2_565 116.3 ? 107 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 2_565 67.1 ? 108 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 2_565 97.6 ? 109 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 2_565 125.2 ? 110 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 97.5 ? 111 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 164.4 ? 112 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 116.3 ? 113 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 67.1 ? 114 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 77.7 ? 115 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 3_555 77.8 ? 116 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 116.3 ? 117 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 67.1 ? 118 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 97.6 ? 119 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 164.5 ? 120 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 77.8 ? 121 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 77.8 ? 122 O4 ? A U 6 ? A U 6 ? 3_555 K ? B K . ? A K 201 ? 1_555 O4 ? A U 6 ? A U 6 ? 4_455 125.2 ? 123 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 51.4 ? 124 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 51.4 ? 125 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 51.4 ? 126 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 51.4 ? 127 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 117.4 ? 128 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 117.4 ? 129 O4 ? A U 6 ? A U 6 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 117.4 ? 130 O4 ? A U 6 ? A U 6 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 1_555 117.4 ? 131 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 51.4 ? 132 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 51.4 ? 133 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 51.4 ? 134 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 51.4 ? 135 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 117.4 ? 136 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 117.4 ? 137 O4 ? A U 6 ? A U 6 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 117.4 ? 138 O4 ? A U 6 ? A U 6 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 117.4 ? 139 K ? C K . ? A K 202 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 2_565 0.0 ? 140 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 51.4 ? 141 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 51.4 ? 142 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 51.4 ? 143 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 51.4 ? 144 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 117.4 ? 145 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 117.4 ? 146 O4 ? A U 6 ? A U 6 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 117.4 ? 147 O4 ? A U 6 ? A U 6 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 117.4 ? 148 K ? C K . ? A K 202 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 0.0 ? 149 K ? C K . ? A K 202 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 3_555 0.0 ? 150 O6 ? A G 5 ? A G 5 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 51.4 ? 151 O6 ? A G 5 ? A G 5 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 51.4 ? 152 O6 ? A G 5 ? A G 5 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 51.4 ? 153 O6 ? A G 5 ? A G 5 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 51.4 ? 154 O4 ? A U 6 ? A U 6 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 117.4 ? 155 O4 ? A U 6 ? A U 6 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 117.4 ? 156 O4 ? A U 6 ? A U 6 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 117.4 ? 157 O4 ? A U 6 ? A U 6 ? 4_455 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 117.4 ? 158 K ? C K . ? A K 202 ? 1_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 0.0 ? 159 K ? C K . ? A K 202 ? 2_565 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 0.0 ? 160 K ? C K . ? A K 202 ? 3_555 K ? B K . ? A K 201 ? 1_555 K ? C K . ? A K 202 ? 4_455 0.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 201 ? 12 'BINDING SITE FOR RESIDUE K A 201' AC2 Software A K 202 ? 16 'BINDING SITE FOR RESIDUE K A 202' AC3 Software A K 203 ? 12 'BINDING SITE FOR RESIDUE K A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 G A 5 ? G A 5 . ? 4_455 ? 2 AC1 12 G A 5 ? G A 5 . ? 1_555 ? 3 AC1 12 G A 5 ? G A 5 . ? 2_565 ? 4 AC1 12 G A 5 ? G A 5 . ? 3_555 ? 5 AC1 12 U A 6 ? U A 6 . ? 4_455 ? 6 AC1 12 U A 6 ? U A 6 . ? 1_555 ? 7 AC1 12 U A 6 ? U A 6 . ? 3_555 ? 8 AC1 12 U A 6 ? U A 6 . ? 2_565 ? 9 AC1 12 K C . ? K A 202 . ? 2_565 ? 10 AC1 12 K C . ? K A 202 . ? 3_555 ? 11 AC1 12 K C . ? K A 202 . ? 4_455 ? 12 AC1 12 K C . ? K A 202 . ? 1_555 ? 13 AC2 16 G A 4 ? G A 4 . ? 4_455 ? 14 AC2 16 G A 4 ? G A 4 . ? 1_555 ? 15 AC2 16 G A 4 ? G A 4 . ? 3_555 ? 16 AC2 16 G A 4 ? G A 4 . ? 2_565 ? 17 AC2 16 G A 5 ? G A 5 . ? 3_555 ? 18 AC2 16 G A 5 ? G A 5 . ? 2_565 ? 19 AC2 16 G A 5 ? G A 5 . ? 1_555 ? 20 AC2 16 G A 5 ? G A 5 . ? 4_455 ? 21 AC2 16 K B . ? K A 201 . ? 4_455 ? 22 AC2 16 K B . ? K A 201 . ? 3_555 ? 23 AC2 16 K B . ? K A 201 . ? 2_565 ? 24 AC2 16 K B . ? K A 201 . ? 1_555 ? 25 AC2 16 K D . ? K A 203 . ? 2_565 ? 26 AC2 16 K D . ? K A 203 . ? 3_555 ? 27 AC2 16 K D . ? K A 203 . ? 4_455 ? 28 AC2 16 K D . ? K A 203 . ? 1_555 ? 29 AC3 12 G A 2 ? G A 2 . ? 4_455 ? 30 AC3 12 G A 2 ? G A 2 . ? 1_555 ? 31 AC3 12 G A 2 ? G A 2 . ? 3_555 ? 32 AC3 12 G A 2 ? G A 2 . ? 2_565 ? 33 AC3 12 G A 4 ? G A 4 . ? 2_565 ? 34 AC3 12 G A 4 ? G A 4 . ? 1_555 ? 35 AC3 12 G A 4 ? G A 4 . ? 3_555 ? 36 AC3 12 G A 4 ? G A 4 . ? 4_455 ? 37 AC3 12 K C . ? K A 202 . ? 4_455 ? 38 AC3 12 K C . ? K A 202 . ? 3_555 ? 39 AC3 12 K C . ? K A 202 . ? 2_565 ? 40 AC3 12 K C . ? K A 202 . ? 1_555 ? # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 4 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 201 ? B K . 2 1 A K 202 ? C K . 3 1 A K 203 ? D K . 4 1 A HOH 115 ? E HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.0982 10.3353 15.1683 0.0361 0.0324 0.0366 -0.0059 0.0132 0.0060 4.5167 13.3656 2.9291 -7.7103 -1.6781 1.6189 -0.2282 -0.0859 -0.1832 0.4605 0.0497 0.2770 0.0653 0.0304 0.1785 'X-RAY DIFFRACTION' 2 ? refined 5.6192 8.1764 10.4529 0.0200 0.0356 0.0516 0.0118 0.0023 0.0102 0.4839 -0.3991 2.7114 0.4766 -2.7451 0.2026 -0.0288 -0.1647 -0.0958 0.0104 0.0519 -0.0009 -0.0217 0.1488 -0.0231 'X-RAY DIFFRACTION' 3 ? refined -1.6795 10.3174 9.7291 0.0283 0.0254 0.0490 -0.0045 -0.0002 0.0063 0.2630 3.5081 1.8102 -1.1272 1.0395 0.9104 0.0626 -0.0562 -0.1662 0.0358 -0.0106 0.0311 -0.0097 -0.0711 -0.0519 'X-RAY DIFFRACTION' 4 ? refined -4.7866 11.7248 6.1916 0.0324 0.0291 0.0385 -0.0015 -0.0055 -0.0096 1.9688 3.0488 0.8431 -1.1506 1.0395 -0.6342 -0.0157 0.1175 -0.1307 -0.0534 0.0895 0.1638 -0.0246 0.0263 -0.0738 'X-RAY DIFFRACTION' 5 ? refined -2.4163 10.8962 2.7258 0.0475 0.0392 0.0233 -0.0039 -0.0004 -0.0301 6.2675 1.4096 1.2765 3.1361 -0.6311 -2.3330 -0.0291 0.3060 -0.2125 -0.3654 -0.0874 -0.2060 0.0642 -0.0048 0.1166 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 2 A 2 2 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 3 3 A 3 3 ? A A 'X-RAY DIFFRACTION' ? 3 3 A 4 4 A 4 4 ? A A 'X-RAY DIFFRACTION' ? 4 4 A 5 5 A 5 5 ? A A 'X-RAY DIFFRACTION' ? 5 5 A 6 6 A 6 6 ? A A 'X-RAY DIFFRACTION' ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal G OP3 O N N 1 G P P N N 2 G OP1 O N N 3 G OP2 O N N 4 G "O5'" O N N 5 G "C5'" C N N 6 G "C4'" C N R 7 G "O4'" O N N 8 G "C3'" C N S 9 G "O3'" O N N 10 G "C2'" C N R 11 G "O2'" O N N 12 G "C1'" C N R 13 G N9 N Y N 14 G C8 C Y N 15 G N7 N Y N 16 G C5 C Y N 17 G C6 C N N 18 G O6 O N N 19 G N1 N N N 20 G C2 C N N 21 G N2 N N N 22 G N3 N N N 23 G C4 C Y N 24 G HOP3 H N N 25 G HOP2 H N N 26 G "H5'" H N N 27 G "H5''" H N N 28 G "H4'" H N N 29 G "H3'" H N N 30 G "HO3'" H N N 31 G "H2'" H N N 32 G "HO2'" H N N 33 G "H1'" H N N 34 G H8 H N N 35 G H1 H N N 36 G H21 H N N 37 G H22 H N N 38 HOH O O N N 39 HOH H1 H N N 40 HOH H2 H N N 41 K K K N N 42 U OP3 O N N 43 U P P N N 44 U OP1 O N N 45 U OP2 O N N 46 U "O5'" O N N 47 U "C5'" C N N 48 U "C4'" C N R 49 U "O4'" O N N 50 U "C3'" C N S 51 U "O3'" O N N 52 U "C2'" C N R 53 U "O2'" O N N 54 U "C1'" C N R 55 U N1 N N N 56 U C2 C N N 57 U O2 O N N 58 U N3 N N N 59 U C4 C N N 60 U O4 O N N 61 U C5 C N N 62 U C6 C N N 63 U HOP3 H N N 64 U HOP2 H N N 65 U "H5'" H N N 66 U "H5''" H N N 67 U "H4'" H N N 68 U "H3'" H N N 69 U "HO3'" H N N 70 U "H2'" H N N 71 U "HO2'" H N N 72 U "H1'" H N N 73 U H3 H N N 74 U H5 H N N 75 U H6 H N N 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G OP3 P sing N N 1 G OP3 HOP3 sing N N 2 G P OP1 doub N N 3 G P OP2 sing N N 4 G P "O5'" sing N N 5 G OP2 HOP2 sing N N 6 G "O5'" "C5'" sing N N 7 G "C5'" "C4'" sing N N 8 G "C5'" "H5'" sing N N 9 G "C5'" "H5''" sing N N 10 G "C4'" "O4'" sing N N 11 G "C4'" "C3'" sing N N 12 G "C4'" "H4'" sing N N 13 G "O4'" "C1'" sing N N 14 G "C3'" "O3'" sing N N 15 G "C3'" "C2'" sing N N 16 G "C3'" "H3'" sing N N 17 G "O3'" "HO3'" sing N N 18 G "C2'" "O2'" sing N N 19 G "C2'" "C1'" sing N N 20 G "C2'" "H2'" sing N N 21 G "O2'" "HO2'" sing N N 22 G "C1'" N9 sing N N 23 G "C1'" "H1'" sing N N 24 G N9 C8 sing Y N 25 G N9 C4 sing Y N 26 G C8 N7 doub Y N 27 G C8 H8 sing N N 28 G N7 C5 sing Y N 29 G C5 C6 sing N N 30 G C5 C4 doub Y N 31 G C6 O6 doub N N 32 G C6 N1 sing N N 33 G N1 C2 sing N N 34 G N1 H1 sing N N 35 G C2 N2 sing N N 36 G C2 N3 doub N N 37 G N2 H21 sing N N 38 G N2 H22 sing N N 39 G N3 C4 sing N N 40 HOH O H1 sing N N 41 HOH O H2 sing N N 42 U OP3 P sing N N 43 U OP3 HOP3 sing N N 44 U P OP1 doub N N 45 U P OP2 sing N N 46 U P "O5'" sing N N 47 U OP2 HOP2 sing N N 48 U "O5'" "C5'" sing N N 49 U "C5'" "C4'" sing N N 50 U "C5'" "H5'" sing N N 51 U "C5'" "H5''" sing N N 52 U "C4'" "O4'" sing N N 53 U "C4'" "C3'" sing N N 54 U "C4'" "H4'" sing N N 55 U "O4'" "C1'" sing N N 56 U "C3'" "O3'" sing N N 57 U "C3'" "C2'" sing N N 58 U "C3'" "H3'" sing N N 59 U "O3'" "HO3'" sing N N 60 U "C2'" "O2'" sing N N 61 U "C2'" "C1'" sing N N 62 U "C2'" "H2'" sing N N 63 U "O2'" "HO2'" sing N N 64 U "C1'" N1 sing N N 65 U "C1'" "H1'" sing N N 66 U N1 C2 sing N N 67 U N1 C6 sing N N 68 U C2 O2 doub N N 69 U C2 N3 sing N N 70 U N3 C4 sing N N 71 U N3 H3 sing N N 72 U C4 O4 doub N N 73 U C4 C5 sing N N 74 U C5 C6 doub N N 75 U C5 H5 sing N N 76 U C6 H6 sing N N 77 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P79 'double helix' 1P79 'parallel strands' 1P79 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 6 1_555 A U 6 1_555 0.523 2.926 0.513 -9.325 21.086 -87.616 1 A_U6:U6_A A 6 ? A 6 ? ? ? 1 A G 5 1_555 A G 5 4_455 1.599 3.487 -0.134 7.140 -7.637 -89.520 2 A_G5:G5_A A 5 ? A 5 ? 6 ? 1 A G 4 1_555 A G 4 1_555 -1.563 -3.480 -0.030 0.768 -1.332 89.990 3 A_G4:G4_A A 4 ? A 4 ? 6 ? 1 A G 2 1_555 A G 2 1_555 1.740 3.455 -0.104 7.887 -7.401 -89.487 4 A_G2:G2_A A 2 ? A 2 ? 6 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 6 1_555 A U 6 1_555 A G 5 1_555 A G 5 4_455 1.733 3.334 -0.801 59.776 -161.863 -135.953 -1.722 0.847 0.204 81.186 29.982 -177.207 1 AA_U6G5:G5U6_AA A 6 ? A 6 ? A 5 ? A 5 ? 1 A G 5 1_555 A G 5 4_455 A G 4 1_555 A G 4 1_555 0.500 0.770 -3.089 -3.594 -4.617 -27.974 -2.521 1.761 -2.842 9.420 -7.333 -28.567 2 AA_G5G4:G4G5_AA A 5 ? A 5 ? A 4 ? A 4 ? 1 A G 4 1_555 A G 4 1_555 A G 2 1_555 A G 2 1_555 -1.681 -3.329 -0.889 90.757 -149.987 144.033 -1.740 0.795 -0.236 -75.092 -45.438 178.552 3 AA_G4G2:G2G4_AA A 4 ? A 4 ? A 2 ? A 2 ? # _atom_sites.entry_id 1P79 _atom_sites.fract_transf_matrix[1][1] 0.028560 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.044930 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P # loop_