HEADER REPLICATION 10-MAY-03 1P9D TITLE HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23A UBIQUITIN-LIKE TITLE 2 DOMAIN AND THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF PROTEASOME TITLE 3 SUBUNIT S5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: C-TERMINAL UBIQUITIN-INTERACTING MOTIF, PUBS2; COMPND 5 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT S5A, RPN10, MULTIUBIQUITIN COMPND 6 CHAIN BINDING PROTEIN, ANTISECRETORY FACTOR-1, AF, ASF; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 10 CHAIN: U; COMPND 11 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 12 SYNONYM: HHR23A; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSMD4 OR MCB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAD23A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PEPTIDE COMPLEX, REPLICATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.D.MUELLER,J.FEIGON REVDAT 3 23-FEB-22 1P9D 1 REMARK REVDAT 2 24-FEB-09 1P9D 1 VERSN REVDAT 1 07-OCT-03 1P9D 0 JRNL AUTH T.D.MUELLER,J.FEIGON JRNL TITL STRUCTURAL DETERMINANTS FOR THE BINDING OF UBIQUITIN-LIKE JRNL TITL 2 DOMAINS TO THE PROTEASOME. JRNL REF EMBO J. V. 22 4634 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12970176 JRNL DOI 10.1093/EMBOJ/CDG467 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER KARLSRUHE (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 2066 RESTRAINTS, 1999 ARE REMARK 3 NOE-DERIVED DISTANCE RESTRAINTS, OF WHICH 58 ARE INTERMOLECULAR. REMARK 3 FOR THE S5A UBIQUITIN-INTERACTING MOTIF ONLY THE RESIDUES 270 TO REMARK 3 301 WERE INCLUDED IN THE STRUCTURE CALCULATIONS DUE TO DISORDER OF REMARK 3 THE FLEXIBLE N- AND C-TERMINI. REMARK 4 REMARK 4 1P9D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019171. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM S5A PEPTIDE UNLABELED, 2MM REMARK 210 UBIQUITIN-LIKE DOMAIN OF HHR23A REMARK 210 U-15N,13C; 2MM S5A PEPTIDE U-15N, REMARK 210 13C, 2MM UBIQUITIN-LIKE DOMAIN REMARK 210 OF HHR23A UNLABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 15N-,13C REMARK 210 -FILTERED/EDITED 2D-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.8.9, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET S 263 REMARK 465 THR S 264 REMARK 465 ILE S 265 REMARK 465 SER S 266 REMARK 465 GLN S 267 REMARK 465 GLN S 268 REMARK 465 GLU S 269 REMARK 465 GLN S 302 REMARK 465 ALA S 303 REMARK 465 GLU S 304 REMARK 465 SER S 305 REMARK 465 ALA S 306 REMARK 465 ASP S 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR S 273 45.55 -84.98 REMARK 500 1 PRO S 276 -77.48 -80.89 REMARK 500 1 ASP S 277 -15.32 84.14 REMARK 500 1 SER S 280 29.84 90.68 REMARK 500 1 THR S 282 -70.82 14.02 REMARK 500 1 LEU S 295 34.61 -87.28 REMARK 500 1 GLN S 296 -31.69 -34.62 REMARK 500 1 ALA S 298 35.41 -155.18 REMARK 500 1 GLU S 299 36.78 -161.51 REMARK 500 1 PHE S 300 64.21 38.07 REMARK 500 1 LEU U 10 -46.37 -5.85 REMARK 500 1 GLN U 11 -5.52 -54.98 REMARK 500 1 GLN U 12 -4.29 96.12 REMARK 500 1 ARG U 18 65.28 -109.61 REMARK 500 1 GLU U 23 174.67 -49.46 REMARK 500 1 VAL U 25 -6.34 58.17 REMARK 500 1 PHE U 41 36.71 -150.21 REMARK 500 1 VAL U 43 -37.75 -28.72 REMARK 500 1 ASP U 57 -16.59 -47.78 REMARK 500 1 ARG U 65 62.15 29.58 REMARK 500 2 ASP S 277 86.52 22.36 REMARK 500 2 SER S 279 35.34 104.78 REMARK 500 2 SER S 280 10.91 88.99 REMARK 500 2 THR S 282 -126.92 29.79 REMARK 500 2 GLU S 283 -68.51 -29.47 REMARK 500 2 PHE S 300 -76.52 77.75 REMARK 500 2 THR U 9 48.22 -85.73 REMARK 500 2 LEU U 10 -30.73 73.09 REMARK 500 2 GLN U 12 -9.27 95.45 REMARK 500 2 GLN U 13 99.75 -56.55 REMARK 500 2 PHE U 15 -165.34 -104.25 REMARK 500 2 ARG U 18 67.79 -110.17 REMARK 500 2 GLU U 23 -176.68 -49.56 REMARK 500 2 VAL U 25 -0.86 52.35 REMARK 500 2 PHE U 41 42.47 -150.75 REMARK 500 2 VAL U 43 -38.03 -28.82 REMARK 500 2 ALA U 44 -73.60 -60.12 REMARK 500 2 ARG U 65 57.15 32.76 REMARK 500 3 PRO S 276 -95.73 -75.69 REMARK 500 3 ASP S 277 -93.37 -125.66 REMARK 500 3 LEU S 278 -26.31 82.98 REMARK 500 3 SER S 279 47.87 -89.34 REMARK 500 3 SER S 280 -28.47 163.02 REMARK 500 3 MET S 281 -62.61 -5.49 REMARK 500 3 THR S 282 -165.59 77.11 REMARK 500 3 LEU S 295 37.50 -81.22 REMARK 500 3 GLN S 296 -30.64 -34.82 REMARK 500 3 ALA S 298 -63.06 87.60 REMARK 500 3 GLU S 299 -92.90 -127.75 REMARK 500 3 ILE U 5 171.34 -50.19 REMARK 500 REMARK 500 THIS ENTRY HAS 206 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P98 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN OF HHR23A REMARK 900 RELATED ID: 1P9C RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF THE REMARK 900 PROEASOME SUBUNIT S5A IN ITS UNBOUND CONFORMATION DBREF 1P9D U 1 78 UNP P54725 RD23A_HUMAN 1 78 DBREF 1P9D S 263 307 UNP P55036 PSD4_HUMAN 263 307 SEQRES 1 S 45 MET THR ILE SER GLN GLN GLU PHE GLY ARG THR GLY LEU SEQRES 2 S 45 PRO ASP LEU SER SER MET THR GLU GLU GLU GLN ILE ALA SEQRES 3 S 45 TYR ALA MET GLN MET SER LEU GLN GLY ALA GLU PHE GLY SEQRES 4 S 45 GLN ALA GLU SER ALA ASP SEQRES 1 U 78 MET ALA VAL THR ILE THR LEU LYS THR LEU GLN GLN GLN SEQRES 2 U 78 THR PHE LYS ILE ARG MET GLU PRO ASP GLU THR VAL LYS SEQRES 3 U 78 VAL LEU LYS GLU LYS ILE GLU ALA GLU LYS GLY ARG ASP SEQRES 4 U 78 ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY SEQRES 5 U 78 LYS ILE LEU SER ASP ASP VAL PRO ILE ARG ASP TYR ARG SEQRES 6 U 78 ILE ASP GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS HELIX 1 1 PRO S 276 SER S 280 5 5 HELIX 2 2 MET S 281 LEU S 295 1 15 HELIX 3 3 VAL U 25 GLY U 37 1 13 HELIX 4 4 PRO U 60 ARG U 65 5 6 SHEET 1 A 5 GLN U 13 ILE U 17 0 SHEET 2 A 5 ILE U 5 THR U 9 -1 N THR U 9 O GLN U 13 SHEET 3 A 5 VAL U 72 MET U 75 1 O VAL U 74 N LYS U 8 SHEET 4 A 5 LYS U 47 TYR U 50 -1 N LYS U 47 O MET U 75 SHEET 5 A 5 LYS U 53 SER U 56 -1 O LEU U 55 N LEU U 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1