data_1PBH # _entry.id 1PBH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PBH pdb_00001pbh 10.2210/pdb1pbh/pdb WWPDB D_1000175585 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PBH _pdbx_database_status.recvd_initial_deposition_date 1997-02-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Podobnik, M.' 1 'Turk, D.' 2 # _citation.id primary _citation.title ;Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide. ; _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 384 _citation.page_first 211 _citation.page_last 214 _citation.year 1996 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8617355 _citation.pdbx_database_id_DOI '10.1016/0014-5793(96)00309-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Turk, D.' 1 ? primary 'Podobnik, M.' 2 ? primary 'Kuhelj, R.' 3 ? primary 'Dolinar, M.' 4 ? primary 'Turk, V.' 5 ? # _cell.entry_id 1PBH _cell.length_a 44.950 _cell.length_b 77.100 _cell.length_c 97.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PBH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'PROCATHEPSIN B' _entity.formula_weight 35226.391 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.4.22.1 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTI KEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESH VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD ; _entity_poly.pdbx_seq_one_letter_code_can ;MRSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTI KEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESH VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 SER n 1 4 ARG n 1 5 PRO n 1 6 SER n 1 7 PHE n 1 8 HIS n 1 9 PRO n 1 10 LEU n 1 11 SER n 1 12 ASP n 1 13 GLU n 1 14 LEU n 1 15 VAL n 1 16 ASN n 1 17 TYR n 1 18 VAL n 1 19 ASN n 1 20 LYS n 1 21 ARG n 1 22 ASN n 1 23 THR n 1 24 THR n 1 25 TRP n 1 26 GLN n 1 27 ALA n 1 28 GLY n 1 29 HIS n 1 30 ASN n 1 31 PHE n 1 32 TYR n 1 33 ASN n 1 34 VAL n 1 35 ASP n 1 36 MET n 1 37 SER n 1 38 TYR n 1 39 LEU n 1 40 LYS n 1 41 ARG n 1 42 LEU n 1 43 CYS n 1 44 GLY n 1 45 THR n 1 46 PHE n 1 47 LEU n 1 48 GLY n 1 49 GLY n 1 50 PRO n 1 51 LYS n 1 52 PRO n 1 53 PRO n 1 54 GLN n 1 55 ARG n 1 56 VAL n 1 57 MET n 1 58 PHE n 1 59 THR n 1 60 GLU n 1 61 ASP n 1 62 LEU n 1 63 LYS n 1 64 LEU n 1 65 PRO n 1 66 ALA n 1 67 SER n 1 68 PHE n 1 69 ASP n 1 70 ALA n 1 71 ARG n 1 72 GLU n 1 73 GLN n 1 74 TRP n 1 75 PRO n 1 76 GLN n 1 77 CYS n 1 78 PRO n 1 79 THR n 1 80 ILE n 1 81 LYS n 1 82 GLU n 1 83 ILE n 1 84 ARG n 1 85 ASP n 1 86 GLN n 1 87 GLY n 1 88 SER n 1 89 CYS n 1 90 GLY n 1 91 SER n 1 92 CYS n 1 93 TRP n 1 94 ALA n 1 95 PHE n 1 96 GLY n 1 97 ALA n 1 98 VAL n 1 99 GLU n 1 100 ALA n 1 101 ILE n 1 102 SER n 1 103 ASP n 1 104 ARG n 1 105 ILE n 1 106 CYS n 1 107 ILE n 1 108 HIS n 1 109 THR n 1 110 ASN n 1 111 ALA n 1 112 HIS n 1 113 VAL n 1 114 SER n 1 115 VAL n 1 116 GLU n 1 117 VAL n 1 118 SER n 1 119 ALA n 1 120 GLU n 1 121 ASP n 1 122 LEU n 1 123 LEU n 1 124 THR n 1 125 CYS n 1 126 CYS n 1 127 GLY n 1 128 SER n 1 129 MET n 1 130 CYS n 1 131 GLY n 1 132 ASP n 1 133 GLY n 1 134 CYS n 1 135 ASN n 1 136 GLY n 1 137 GLY n 1 138 TYR n 1 139 PRO n 1 140 ALA n 1 141 GLU n 1 142 ALA n 1 143 TRP n 1 144 ASN n 1 145 PHE n 1 146 TRP n 1 147 THR n 1 148 ARG n 1 149 LYS n 1 150 GLY n 1 151 LEU n 1 152 VAL n 1 153 SER n 1 154 GLY n 1 155 GLY n 1 156 LEU n 1 157 TYR n 1 158 GLU n 1 159 SER n 1 160 HIS n 1 161 VAL n 1 162 GLY n 1 163 CYS n 1 164 ARG n 1 165 PRO n 1 166 TYR n 1 167 SER n 1 168 ILE n 1 169 PRO n 1 170 PRO n 1 171 CYS n 1 172 GLU n 1 173 HIS n 1 174 HIS n 1 175 VAL n 1 176 ASN n 1 177 GLY n 1 178 SER n 1 179 ARG n 1 180 PRO n 1 181 PRO n 1 182 CYS n 1 183 THR n 1 184 GLY n 1 185 GLU n 1 186 GLY n 1 187 ASP n 1 188 THR n 1 189 PRO n 1 190 LYS n 1 191 CYS n 1 192 SER n 1 193 LYS n 1 194 ILE n 1 195 CYS n 1 196 GLU n 1 197 PRO n 1 198 GLY n 1 199 TYR n 1 200 SER n 1 201 PRO n 1 202 THR n 1 203 TYR n 1 204 LYS n 1 205 GLN n 1 206 ASP n 1 207 LYS n 1 208 HIS n 1 209 TYR n 1 210 GLY n 1 211 TYR n 1 212 ASN n 1 213 SER n 1 214 TYR n 1 215 SER n 1 216 VAL n 1 217 SER n 1 218 ASN n 1 219 SER n 1 220 GLU n 1 221 LYS n 1 222 ASP n 1 223 ILE n 1 224 MET n 1 225 ALA n 1 226 GLU n 1 227 ILE n 1 228 TYR n 1 229 LYS n 1 230 ASN n 1 231 GLY n 1 232 PRO n 1 233 VAL n 1 234 GLU n 1 235 GLY n 1 236 ALA n 1 237 PHE n 1 238 SER n 1 239 VAL n 1 240 TYR n 1 241 SER n 1 242 ASP n 1 243 PHE n 1 244 LEU n 1 245 LEU n 1 246 TYR n 1 247 LYS n 1 248 SER n 1 249 GLY n 1 250 VAL n 1 251 TYR n 1 252 GLN n 1 253 HIS n 1 254 VAL n 1 255 THR n 1 256 GLY n 1 257 GLU n 1 258 MET n 1 259 MET n 1 260 GLY n 1 261 GLY n 1 262 HIS n 1 263 ALA n 1 264 ILE n 1 265 ARG n 1 266 ILE n 1 267 LEU n 1 268 GLY n 1 269 TRP n 1 270 GLY n 1 271 VAL n 1 272 GLU n 1 273 ASN n 1 274 GLY n 1 275 THR n 1 276 PRO n 1 277 TYR n 1 278 TRP n 1 279 LEU n 1 280 VAL n 1 281 ALA n 1 282 ASN n 1 283 SER n 1 284 TRP n 1 285 ASN n 1 286 THR n 1 287 ASP n 1 288 TRP n 1 289 GLY n 1 290 ASP n 1 291 ASN n 1 292 GLY n 1 293 PHE n 1 294 PHE n 1 295 LYS n 1 296 ILE n 1 297 LEU n 1 298 ARG n 1 299 GLY n 1 300 GLN n 1 301 ASP n 1 302 HIS n 1 303 CYS n 1 304 GLY n 1 305 ILE n 1 306 GLU n 1 307 SER n 1 308 GLU n 1 309 VAL n 1 310 VAL n 1 311 ALA n 1 312 GLY n 1 313 ILE n 1 314 PRO n 1 315 ARG n 1 316 THR n 1 317 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET3A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name BL21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATB_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P07858 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MWQLWASLCCLLVLANARSRPSFHPVSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKL PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG IESEVVAGIPRTDQYWEKI ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PBH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 65 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 317 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07858 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 333 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 254 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1PBH _struct_ref_seq_dif.mon_id LEU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 10 _struct_ref_seq_dif.pdbx_pdb_ins_code P _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P07858 _struct_ref_seq_dif.db_mon_id VAL _struct_ref_seq_dif.pdbx_seq_db_seq_num 26 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 9 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PBH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.9 _exptl_crystal.density_percent_sol 57. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 30% PEG 6000, 0.2 M AMMONIUM SULFATE, 0.1 M HEPES, PH 7.3' # _diffrn.id 1 _diffrn.ambient_temp 283 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-10 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1PBH _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.0 _reflns.d_resolution_high 3.2 _reflns.number_obs 5151 _reflns.number_all ? _reflns.percent_possible_obs 88.5 _reflns.pdbx_Rmerge_I_obs 0.166 _reflns.pdbx_Rsym_value 0.115 _reflns.pdbx_netI_over_sigmaI 3.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.0 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.3 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.117 _reflns_shell.pdbx_Rsym_value 0.278 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PBH _refine.ls_number_reflns_obs 5051 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 3.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2158 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8. _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1HUC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2383 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2383 _refine_hist.d_res_high 3.2 _refine_hist.d_res_low 10. # _struct.entry_id 1PBH _struct.title 'CRYSTAL STRUCTURE OF HUMAN RECOMBINANT PROCATHEPSIN B AT 3.2 ANGSTROM RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PBH _struct_keywords.pdbx_keywords 'THIOL PROTEASE' _struct_keywords.text 'THIOL PROTEASE, CATHEPSIN B, CYSTEINE PROTEASE, PROENZYME, PAPAIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 13 P LYS A 20 P GLU A 12 LYS A 19 1 ? 8 HELX_P HELX_P2 2 MET A 36 P LEU A 42 P MET A 35 LEU A 41 1 ? 7 HELX_P HELX_P3 3 ALA A 70 ? GLN A 73 ? ALA A 7 GLN A 10 1 ? 4 HELX_P HELX_P4 4 PRO A 78 ? ILE A 80 ? PRO A 15 ILE A 17 5 ? 3 HELX_P HELX_P5 5 CYS A 92 ? HIS A 108 ? CYS A 29 HIS A 45 1 ? 17 HELX_P HELX_P6 6 ALA A 119 ? CYS A 125 ? ALA A 56 CYS A 62 1 ? 7 HELX_P HELX_P7 7 GLY A 133 ? ASN A 135 ? GLY A 70 ASN A 72 5 ? 3 HELX_P HELX_P8 8 PRO A 139 ? ARG A 148 ? PRO A 76 ARG A 85 1 ? 10 HELX_P HELX_P9 9 TYR A 203 ? ASP A 206 ? TYR A 140 ASP A 143 1 ? 4 HELX_P HELX_P10 10 GLU A 220 ? ASN A 230 ? GLU A 157 ASN A 167 1 ? 11 HELX_P HELX_P11 11 PHE A 243 ? LEU A 245 ? PHE A 180 LEU A 182 5 ? 3 HELX_P HELX_P12 12 HIS A 302 ? GLY A 304 ? HIS A 239 GLY A 241 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 106 SG ? ? A CYS 14 A CYS 43 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf2 disulf ? ? A CYS 89 SG ? ? ? 1_555 A CYS 134 SG ? ? A CYS 26 A CYS 71 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 125 SG ? ? ? 1_555 A CYS 191 SG ? ? A CYS 62 A CYS 128 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf4 disulf ? ? A CYS 126 SG ? ? ? 1_555 A CYS 130 SG ? ? A CYS 63 A CYS 67 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf5 disulf ? ? A CYS 163 SG ? ? ? 1_555 A CYS 195 SG ? ? A CYS 100 A CYS 132 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf6 disulf ? ? A CYS 171 SG ? ? ? 1_555 A CYS 182 SG ? ? A CYS 108 A CYS 119 1_555 ? ? ? ? ? ? ? 2.027 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 200 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 137 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 201 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 138 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 293 ? LEU A 297 ? PHE A 230 LEU A 234 A 2 PRO A 276 ? ALA A 281 ? PRO A 213 ALA A 218 A 3 MET A 258 ? VAL A 271 ? MET A 195 VAL A 208 A 4 VAL A 233 ? TYR A 240 ? VAL A 170 TYR A 177 B 1 TRP A 25 P ALA A 27 P TRP A 24 ALA A 26 B 2 TYR A 246 ? GLY A 249 ? TYR A 183 GLY A 186 C 1 GLY A 210 ? SER A 215 ? GLY A 147 SER A 152 C 2 VAL A 310 ? PRO A 314 ? VAL A 247 PRO A 251 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 294 ? O PHE A 231 N VAL A 280 ? N VAL A 217 A 2 3 O TYR A 277 ? O TYR A 214 N GLY A 270 ? N GLY A 207 A 3 4 O MET A 259 ? O MET A 196 N VAL A 239 ? N VAL A 176 B 1 2 O GLN A 26 P O GLN A 25 N SER A 248 ? N SER A 185 C 1 2 O TYR A 211 ? O TYR A 148 N ILE A 313 ? N ILE A 250 # _database_PDB_matrix.entry_id 1PBH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PBH _atom_sites.fract_transf_matrix[1][1] 0.022247 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010274 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A A n A 1 2 ARG 2 1 1 ARG ARG A P n A 1 3 SER 3 2 2 SER SER A P n A 1 4 ARG 4 3 3 ARG ARG A P n A 1 5 PRO 5 4 4 PRO PRO A P n A 1 6 SER 6 5 5 SER SER A P n A 1 7 PHE 7 6 6 PHE PHE A P n A 1 8 HIS 8 7 7 HIS HIS A P n A 1 9 PRO 9 8 8 PRO PRO A P n A 1 10 LEU 10 9 9 LEU LEU A P n A 1 11 SER 11 10 10 SER SER A P n A 1 12 ASP 12 11 11 ASP ASP A P n A 1 13 GLU 13 12 12 GLU GLU A P n A 1 14 LEU 14 13 13 LEU LEU A P n A 1 15 VAL 15 14 14 VAL VAL A P n A 1 16 ASN 16 15 15 ASN ASN A P n A 1 17 TYR 17 16 16 TYR TYR A P n A 1 18 VAL 18 17 17 VAL VAL A P n A 1 19 ASN 19 18 18 ASN ASN A P n A 1 20 LYS 20 19 19 LYS LYS A P n A 1 21 ARG 21 20 20 ARG ARG A P n A 1 22 ASN 22 21 21 ASN ASN A P n A 1 23 THR 23 22 22 THR THR A P n A 1 24 THR 24 23 23 THR THR A P n A 1 25 TRP 25 24 24 TRP TRP A P n A 1 26 GLN 26 25 25 GLN GLN A P n A 1 27 ALA 27 26 26 ALA ALA A P n A 1 28 GLY 28 27 27 GLY GLY A P n A 1 29 HIS 29 28 28 HIS HIS A P n A 1 30 ASN 30 29 29 ASN ASN A P n A 1 31 PHE 31 30 30 PHE PHE A P n A 1 32 TYR 32 31 31 TYR TYR A P n A 1 33 ASN 33 32 32 ASN ASN A P n A 1 34 VAL 34 33 33 VAL VAL A P n A 1 35 ASP 35 34 34 ASP ASP A P n A 1 36 MET 36 35 35 MET MET A P n A 1 37 SER 37 36 36 SER SER A P n A 1 38 TYR 38 37 37 TYR TYR A P n A 1 39 LEU 39 38 38 LEU LEU A P n A 1 40 LYS 40 39 39 LYS LYS A P n A 1 41 ARG 41 40 40 ARG ARG A P n A 1 42 LEU 42 41 41 LEU LEU A P n A 1 43 CYS 43 42 42 CYS CYS A P n A 1 44 GLY 44 43 43 GLY GLY A P n A 1 45 THR 45 44 44 THR THR A P n A 1 46 PHE 46 45 45 PHE PHE A P n A 1 47 LEU 47 46 46 LEU LEU A P n A 1 48 GLY 48 47 47 GLY GLY A P n A 1 49 GLY 49 48 48 GLY GLY A P n A 1 50 PRO 50 49 49 PRO PRO A P n A 1 51 LYS 51 50 50 LYS LYS A P n A 1 52 PRO 52 51 51 PRO PRO A P n A 1 53 PRO 53 52 52 PRO PRO A P n A 1 54 GLN 54 53 53 GLN GLN A P n A 1 55 ARG 55 54 54 ARG ARG A P n A 1 56 VAL 56 55 55 VAL VAL A P n A 1 57 MET 57 56 56 MET MET A P n A 1 58 PHE 58 57 57 PHE PHE A P n A 1 59 THR 59 58 58 THR THR A P n A 1 60 GLU 60 59 59 GLU GLU A P n A 1 61 ASP 61 60 60 ASP ASP A P n A 1 62 LEU 62 61 61 LEU LEU A P n A 1 63 LYS 63 62 62 LYS LYS A P n A 1 64 LEU 64 1 1 LEU LEU A . n A 1 65 PRO 65 2 2 PRO PRO A . n A 1 66 ALA 66 3 3 ALA ALA A . n A 1 67 SER 67 4 4 SER SER A . n A 1 68 PHE 68 5 5 PHE PHE A . n A 1 69 ASP 69 6 6 ASP ASP A . n A 1 70 ALA 70 7 7 ALA ALA A . n A 1 71 ARG 71 8 8 ARG ARG A . n A 1 72 GLU 72 9 9 GLU GLU A . n A 1 73 GLN 73 10 10 GLN GLN A . n A 1 74 TRP 74 11 11 TRP TRP A . n A 1 75 PRO 75 12 12 PRO PRO A . n A 1 76 GLN 76 13 13 GLN GLN A . n A 1 77 CYS 77 14 14 CYS CYS A . n A 1 78 PRO 78 15 15 PRO PRO A . n A 1 79 THR 79 16 16 THR THR A . n A 1 80 ILE 80 17 17 ILE ILE A . n A 1 81 LYS 81 18 18 LYS LYS A . n A 1 82 GLU 82 19 19 GLU GLU A . n A 1 83 ILE 83 20 20 ILE ILE A . n A 1 84 ARG 84 21 21 ARG ARG A . n A 1 85 ASP 85 22 22 ASP ASP A . n A 1 86 GLN 86 23 23 GLN GLN A . n A 1 87 GLY 87 24 24 GLY GLY A . n A 1 88 SER 88 25 25 SER SER A . n A 1 89 CYS 89 26 26 CYS CYS A . n A 1 90 GLY 90 27 27 GLY GLY A . n A 1 91 SER 91 28 28 SER SER A . n A 1 92 CYS 92 29 29 CYS CYS A . n A 1 93 TRP 93 30 30 TRP TRP A . n A 1 94 ALA 94 31 31 ALA ALA A . n A 1 95 PHE 95 32 32 PHE PHE A . n A 1 96 GLY 96 33 33 GLY GLY A . n A 1 97 ALA 97 34 34 ALA ALA A . n A 1 98 VAL 98 35 35 VAL VAL A . n A 1 99 GLU 99 36 36 GLU GLU A . n A 1 100 ALA 100 37 37 ALA ALA A . n A 1 101 ILE 101 38 38 ILE ILE A . n A 1 102 SER 102 39 39 SER SER A . n A 1 103 ASP 103 40 40 ASP ASP A . n A 1 104 ARG 104 41 41 ARG ARG A . n A 1 105 ILE 105 42 42 ILE ILE A . n A 1 106 CYS 106 43 43 CYS CYS A . n A 1 107 ILE 107 44 44 ILE ILE A . n A 1 108 HIS 108 45 45 HIS HIS A . n A 1 109 THR 109 46 46 THR THR A . n A 1 110 ASN 110 47 47 ASN ASN A . n A 1 111 ALA 111 48 48 ALA ALA A . n A 1 112 HIS 112 49 49 HIS HIS A . n A 1 113 VAL 113 50 50 VAL VAL A . n A 1 114 SER 114 51 51 SER SER A . n A 1 115 VAL 115 52 52 VAL VAL A . n A 1 116 GLU 116 53 53 GLU GLU A . n A 1 117 VAL 117 54 54 VAL VAL A . n A 1 118 SER 118 55 55 SER SER A . n A 1 119 ALA 119 56 56 ALA ALA A . n A 1 120 GLU 120 57 57 GLU GLU A . n A 1 121 ASP 121 58 58 ASP ASP A . n A 1 122 LEU 122 59 59 LEU LEU A . n A 1 123 LEU 123 60 60 LEU LEU A . n A 1 124 THR 124 61 61 THR THR A . n A 1 125 CYS 125 62 62 CYS CYS A . n A 1 126 CYS 126 63 63 CYS CYS A . n A 1 127 GLY 127 64 64 GLY GLY A . n A 1 128 SER 128 65 65 SER SER A . n A 1 129 MET 129 66 66 MET MET A . n A 1 130 CYS 130 67 67 CYS CYS A . n A 1 131 GLY 131 68 68 GLY GLY A . n A 1 132 ASP 132 69 69 ASP ASP A . n A 1 133 GLY 133 70 70 GLY GLY A . n A 1 134 CYS 134 71 71 CYS CYS A . n A 1 135 ASN 135 72 72 ASN ASN A . n A 1 136 GLY 136 73 73 GLY GLY A . n A 1 137 GLY 137 74 74 GLY GLY A . n A 1 138 TYR 138 75 75 TYR TYR A . n A 1 139 PRO 139 76 76 PRO PRO A . n A 1 140 ALA 140 77 77 ALA ALA A . n A 1 141 GLU 141 78 78 GLU GLU A . n A 1 142 ALA 142 79 79 ALA ALA A . n A 1 143 TRP 143 80 80 TRP TRP A . n A 1 144 ASN 144 81 81 ASN ASN A . n A 1 145 PHE 145 82 82 PHE PHE A . n A 1 146 TRP 146 83 83 TRP TRP A . n A 1 147 THR 147 84 84 THR THR A . n A 1 148 ARG 148 85 85 ARG ARG A . n A 1 149 LYS 149 86 86 LYS LYS A . n A 1 150 GLY 150 87 87 GLY GLY A . n A 1 151 LEU 151 88 88 LEU LEU A . n A 1 152 VAL 152 89 89 VAL VAL A . n A 1 153 SER 153 90 90 SER SER A . n A 1 154 GLY 154 91 91 GLY GLY A . n A 1 155 GLY 155 92 92 GLY GLY A . n A 1 156 LEU 156 93 93 LEU LEU A . n A 1 157 TYR 157 94 94 TYR TYR A . n A 1 158 GLU 158 95 95 GLU GLU A . n A 1 159 SER 159 96 96 SER SER A . n A 1 160 HIS 160 97 97 HIS HIS A . n A 1 161 VAL 161 98 98 VAL VAL A . n A 1 162 GLY 162 99 99 GLY GLY A . n A 1 163 CYS 163 100 100 CYS CYS A . n A 1 164 ARG 164 101 101 ARG ARG A . n A 1 165 PRO 165 102 102 PRO PRO A . n A 1 166 TYR 166 103 103 TYR TYR A . n A 1 167 SER 167 104 104 SER SER A . n A 1 168 ILE 168 105 105 ILE ILE A . n A 1 169 PRO 169 106 106 PRO PRO A . n A 1 170 PRO 170 107 107 PRO PRO A . n A 1 171 CYS 171 108 108 CYS CYS A . n A 1 172 GLU 172 109 109 GLU GLU A . n A 1 173 HIS 173 110 110 HIS HIS A . n A 1 174 HIS 174 111 111 HIS HIS A . n A 1 175 VAL 175 112 112 VAL VAL A . n A 1 176 ASN 176 113 113 ASN ASN A . n A 1 177 GLY 177 114 114 GLY GLY A . n A 1 178 SER 178 115 115 SER SER A . n A 1 179 ARG 179 116 116 ARG ARG A . n A 1 180 PRO 180 117 117 PRO PRO A . n A 1 181 PRO 181 118 118 PRO PRO A . n A 1 182 CYS 182 119 119 CYS CYS A . n A 1 183 THR 183 120 120 THR THR A . n A 1 184 GLY 184 121 121 GLY GLY A . n A 1 185 GLU 185 122 122 GLU GLU A . n A 1 186 GLY 186 123 123 GLY GLY A . n A 1 187 ASP 187 124 124 ASP ASP A . n A 1 188 THR 188 125 125 THR THR A . n A 1 189 PRO 189 126 126 PRO PRO A . n A 1 190 LYS 190 127 127 LYS LYS A . n A 1 191 CYS 191 128 128 CYS CYS A . n A 1 192 SER 192 129 129 SER SER A . n A 1 193 LYS 193 130 130 LYS LYS A . n A 1 194 ILE 194 131 131 ILE ILE A . n A 1 195 CYS 195 132 132 CYS CYS A . n A 1 196 GLU 196 133 133 GLU GLU A . n A 1 197 PRO 197 134 134 PRO PRO A . n A 1 198 GLY 198 135 135 GLY GLY A . n A 1 199 TYR 199 136 136 TYR TYR A . n A 1 200 SER 200 137 137 SER SER A . n A 1 201 PRO 201 138 138 PRO PRO A . n A 1 202 THR 202 139 139 THR THR A . n A 1 203 TYR 203 140 140 TYR TYR A . n A 1 204 LYS 204 141 141 LYS LYS A . n A 1 205 GLN 205 142 142 GLN GLN A . n A 1 206 ASP 206 143 143 ASP ASP A . n A 1 207 LYS 207 144 144 LYS LYS A . n A 1 208 HIS 208 145 145 HIS HIS A . n A 1 209 TYR 209 146 146 TYR TYR A . n A 1 210 GLY 210 147 147 GLY GLY A . n A 1 211 TYR 211 148 148 TYR TYR A . n A 1 212 ASN 212 149 149 ASN ASN A . n A 1 213 SER 213 150 150 SER SER A . n A 1 214 TYR 214 151 151 TYR TYR A . n A 1 215 SER 215 152 152 SER SER A . n A 1 216 VAL 216 153 153 VAL VAL A . n A 1 217 SER 217 154 154 SER SER A . n A 1 218 ASN 218 155 155 ASN ASN A . n A 1 219 SER 219 156 156 SER SER A . n A 1 220 GLU 220 157 157 GLU GLU A . n A 1 221 LYS 221 158 158 LYS LYS A . n A 1 222 ASP 222 159 159 ASP ASP A . n A 1 223 ILE 223 160 160 ILE ILE A . n A 1 224 MET 224 161 161 MET MET A . n A 1 225 ALA 225 162 162 ALA ALA A . n A 1 226 GLU 226 163 163 GLU GLU A . n A 1 227 ILE 227 164 164 ILE ILE A . n A 1 228 TYR 228 165 165 TYR TYR A . n A 1 229 LYS 229 166 166 LYS LYS A . n A 1 230 ASN 230 167 167 ASN ASN A . n A 1 231 GLY 231 168 168 GLY GLY A . n A 1 232 PRO 232 169 169 PRO PRO A . n A 1 233 VAL 233 170 170 VAL VAL A . n A 1 234 GLU 234 171 171 GLU GLU A . n A 1 235 GLY 235 172 172 GLY GLY A . n A 1 236 ALA 236 173 173 ALA ALA A . n A 1 237 PHE 237 174 174 PHE PHE A . n A 1 238 SER 238 175 175 SER SER A . n A 1 239 VAL 239 176 176 VAL VAL A . n A 1 240 TYR 240 177 177 TYR TYR A . n A 1 241 SER 241 178 178 SER SER A . n A 1 242 ASP 242 179 179 ASP ASP A . n A 1 243 PHE 243 180 180 PHE PHE A . n A 1 244 LEU 244 181 181 LEU LEU A . n A 1 245 LEU 245 182 182 LEU LEU A . n A 1 246 TYR 246 183 183 TYR TYR A . n A 1 247 LYS 247 184 184 LYS LYS A . n A 1 248 SER 248 185 185 SER SER A . n A 1 249 GLY 249 186 186 GLY GLY A . n A 1 250 VAL 250 187 187 VAL VAL A . n A 1 251 TYR 251 188 188 TYR TYR A . n A 1 252 GLN 252 189 189 GLN GLN A . n A 1 253 HIS 253 190 190 HIS HIS A . n A 1 254 VAL 254 191 191 VAL VAL A . n A 1 255 THR 255 192 192 THR THR A . n A 1 256 GLY 256 193 193 GLY GLY A . n A 1 257 GLU 257 194 194 GLU GLU A . n A 1 258 MET 258 195 195 MET MET A . n A 1 259 MET 259 196 196 MET MET A . n A 1 260 GLY 260 197 197 GLY GLY A . n A 1 261 GLY 261 198 198 GLY GLY A . n A 1 262 HIS 262 199 199 HIS HIS A . n A 1 263 ALA 263 200 200 ALA ALA A . n A 1 264 ILE 264 201 201 ILE ILE A . n A 1 265 ARG 265 202 202 ARG ARG A . n A 1 266 ILE 266 203 203 ILE ILE A . n A 1 267 LEU 267 204 204 LEU LEU A . n A 1 268 GLY 268 205 205 GLY GLY A . n A 1 269 TRP 269 206 206 TRP TRP A . n A 1 270 GLY 270 207 207 GLY GLY A . n A 1 271 VAL 271 208 208 VAL VAL A . n A 1 272 GLU 272 209 209 GLU GLU A . n A 1 273 ASN 273 210 210 ASN ASN A . n A 1 274 GLY 274 211 211 GLY GLY A . n A 1 275 THR 275 212 212 THR THR A . n A 1 276 PRO 276 213 213 PRO PRO A . n A 1 277 TYR 277 214 214 TYR TYR A . n A 1 278 TRP 278 215 215 TRP TRP A . n A 1 279 LEU 279 216 216 LEU LEU A . n A 1 280 VAL 280 217 217 VAL VAL A . n A 1 281 ALA 281 218 218 ALA ALA A . n A 1 282 ASN 282 219 219 ASN ASN A . n A 1 283 SER 283 220 220 SER SER A . n A 1 284 TRP 284 221 221 TRP TRP A . n A 1 285 ASN 285 222 222 ASN ASN A . n A 1 286 THR 286 223 223 THR THR A . n A 1 287 ASP 287 224 224 ASP ASP A . n A 1 288 TRP 288 225 225 TRP TRP A . n A 1 289 GLY 289 226 226 GLY GLY A . n A 1 290 ASP 290 227 227 ASP ASP A . n A 1 291 ASN 291 228 228 ASN ASN A . n A 1 292 GLY 292 229 229 GLY GLY A . n A 1 293 PHE 293 230 230 PHE PHE A . n A 1 294 PHE 294 231 231 PHE PHE A . n A 1 295 LYS 295 232 232 LYS LYS A . n A 1 296 ILE 296 233 233 ILE ILE A . n A 1 297 LEU 297 234 234 LEU LEU A . n A 1 298 ARG 298 235 235 ARG ARG A . n A 1 299 GLY 299 236 236 GLY GLY A . n A 1 300 GLN 300 237 237 GLN GLN A . n A 1 301 ASP 301 238 238 ASP ASP A . n A 1 302 HIS 302 239 239 HIS HIS A . n A 1 303 CYS 303 240 240 CYS CYS A . n A 1 304 GLY 304 241 241 GLY GLY A . n A 1 305 ILE 305 242 242 ILE ILE A . n A 1 306 GLU 306 243 243 GLU GLU A . n A 1 307 SER 307 244 244 SER SER A . n A 1 308 GLU 308 245 245 GLU GLU A . n A 1 309 VAL 309 246 246 VAL VAL A . n A 1 310 VAL 310 247 247 VAL VAL A . n A 1 311 ALA 311 248 248 ALA ALA A . n A 1 312 GLY 312 249 249 GLY GLY A . n A 1 313 ILE 313 250 250 ILE ILE A . n A 1 314 PRO 314 251 251 PRO PRO A . n A 1 315 ARG 315 252 252 ARG ARG A . n A 1 316 THR 316 253 253 THR THR A . n A 1 317 ASP 317 254 254 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-02-25 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 CCP4 'data reduction' . ? 2 MAIN 'model building' . ? 3 MAIN refinement . ? 4 CCP4 'data scaling' . ? 5 MAIN phasing . ? 6 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OD1 A ASP 60 P ? 1_555 ND2 A ASN 228 ? ? 4_555 1.69 2 1 ND2 A ASN 47 ? ? 1_555 O A GLY 211 ? ? 4_555 2.06 3 1 O A LYS 62 P ? 1_555 CE1 A TYR 148 ? ? 4_455 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A PRO 51 P ? N A PRO 52 P ? CD A PRO 52 P ? 111.84 128.40 -16.56 2.10 Y 2 1 C A CYS 14 ? ? N A PRO 15 ? ? CA A PRO 15 ? ? 130.50 119.30 11.20 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 1 P ? -172.73 83.39 2 1 SER A 5 P ? -156.23 -127.23 3 1 PHE A 6 P ? -156.77 -134.92 4 1 HIS A 7 P ? 54.08 72.96 5 1 PRO A 8 P ? -54.37 -147.46 6 1 SER A 10 P ? -58.26 -170.14 7 1 PRO A 52 P ? 13.27 -133.25 8 1 GLN A 53 P ? -161.37 112.91 9 1 ARG A 54 P ? -68.83 97.52 10 1 VAL A 55 P ? -64.40 82.91 11 1 GLU A 59 P ? 156.37 108.74 12 1 ASP A 60 P ? 78.91 68.03 13 1 LEU A 61 P ? -164.12 87.29 14 1 PHE A 5 ? ? -170.92 137.33 15 1 TRP A 11 ? ? -110.74 75.95 16 1 SER A 25 ? ? -91.88 59.26 17 1 ASN A 47 ? ? 81.28 109.49 18 1 ALA A 48 ? ? -51.56 69.58 19 1 HIS A 49 ? ? -169.55 8.17 20 1 CYS A 63 ? ? -67.51 -72.18 21 1 GLU A 109 ? ? -74.01 37.49 22 1 ASN A 113 ? ? 6.38 139.79 23 1 CYS A 128 ? ? -53.69 96.41 24 1 LYS A 130 ? ? -68.48 63.49 25 1 PRO A 138 ? ? -45.05 -177.73 26 1 SER A 154 ? ? -48.79 167.57 27 1 PRO A 169 ? ? -46.44 153.59 28 1 VAL A 191 ? ? -103.84 -65.57 29 1 ASN A 210 ? ? 52.64 75.78 30 1 ASN A 222 ? ? 71.29 179.38 31 1 GLN A 237 ? ? -145.39 18.32 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A PRO 4 P CB ? A PRO 5 CB 2 1 Y 0 A PRO 4 P CG ? A PRO 5 CG 3 1 Y 0 A PRO 4 P CD ? A PRO 5 CD 4 1 Y 0 A SER 5 P CB ? A SER 6 CB 5 1 Y 0 A SER 5 P OG ? A SER 6 OG 6 1 Y 0 A PHE 6 P CB ? A PHE 7 CB 7 1 Y 0 A PHE 6 P CG ? A PHE 7 CG 8 1 Y 0 A PHE 6 P CD1 ? A PHE 7 CD1 9 1 Y 0 A PHE 6 P CD2 ? A PHE 7 CD2 10 1 Y 0 A PHE 6 P CE1 ? A PHE 7 CE1 11 1 Y 0 A PHE 6 P CE2 ? A PHE 7 CE2 12 1 Y 0 A PHE 6 P CZ ? A PHE 7 CZ 13 1 Y 0 A HIS 7 P CB ? A HIS 8 CB 14 1 Y 0 A HIS 7 P CG ? A HIS 8 CG 15 1 Y 0 A HIS 7 P ND1 ? A HIS 8 ND1 16 1 Y 0 A HIS 7 P CD2 ? A HIS 8 CD2 17 1 Y 0 A HIS 7 P CE1 ? A HIS 8 CE1 18 1 Y 0 A HIS 7 P NE2 ? A HIS 8 NE2 19 1 Y 0 A LYS 50 P CB ? A LYS 51 CB 20 1 Y 0 A LYS 50 P CG ? A LYS 51 CG 21 1 Y 0 A LYS 50 P CD ? A LYS 51 CD 22 1 Y 0 A LYS 50 P CE ? A LYS 51 CE 23 1 Y 0 A LYS 50 P NZ ? A LYS 51 NZ 24 1 Y 0 A ASP 60 P CB ? A ASP 61 CB 25 1 Y 0 A ASP 60 P CG ? A ASP 61 CG 26 1 Y 0 A ASP 60 P OD1 ? A ASP 61 OD1 27 1 Y 0 A ASP 60 P OD2 ? A ASP 61 OD2 28 1 Y 0 A LYS 62 P CB ? A LYS 63 CB 29 1 Y 0 A LYS 62 P CG ? A LYS 63 CG 30 1 Y 0 A LYS 62 P CD ? A LYS 63 CD 31 1 Y 0 A LYS 62 P CE ? A LYS 63 CE 32 1 Y 0 A LYS 62 P NZ ? A LYS 63 NZ 33 1 Y 0 A GLU 9 ? CG ? A GLU 72 CG 34 1 Y 0 A GLU 9 ? CD ? A GLU 72 CD 35 1 Y 0 A GLU 9 ? OE1 ? A GLU 72 OE1 36 1 Y 0 A GLU 9 ? OE2 ? A GLU 72 OE2 37 1 Y 0 A LYS 18 ? CD ? A LYS 81 CD 38 1 Y 0 A LYS 18 ? CE ? A LYS 81 CE 39 1 Y 0 A LYS 18 ? NZ ? A LYS 81 NZ 40 1 Y 0 A LYS 141 ? CD ? A LYS 204 CD 41 1 Y 0 A LYS 141 ? CE ? A LYS 204 CE 42 1 Y 0 A LYS 141 ? NZ ? A LYS 204 NZ 43 1 Y 0 A LYS 144 ? CD ? A LYS 207 CD 44 1 Y 0 A LYS 144 ? CE ? A LYS 207 CE 45 1 Y 0 A LYS 144 ? NZ ? A LYS 207 NZ 46 1 Y 0 A ASP 254 ? C ? A ASP 317 C 47 1 Y 0 A ASP 254 ? O ? A ASP 317 O 48 1 Y 0 A ASP 254 ? CB ? A ASP 317 CB 49 1 Y 0 A ASP 254 ? CG ? A ASP 317 CG 50 1 Y 0 A ASP 254 ? OD1 ? A ASP 317 OD1 51 1 Y 0 A ASP 254 ? OD2 ? A ASP 317 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 A MET 1 A A MET 1 2 1 Y 0 A ARG 1 P A ARG 2 3 1 Y 0 A SER 2 P A SER 3 4 1 Y 0 A ARG 3 P A ARG 4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HUC _pdbx_initial_refinement_model.details 'PDB ENTRY 1HUC' #