data_1PJO # _entry.id 1PJO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PJO pdb_00001pjo 10.2210/pdb1pjo/pdb NDB UH0006 ? ? RCSB RCSB019369 ? ? WWPDB D_1000019369 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-09 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 27 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr1_symmetry' 36 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 4 'Structure model' '_struct_conn.ptnr2_symmetry' 44 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 45 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 46 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PJO _pdbx_database_status.recvd_initial_deposition_date 2003-06-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PJG ;Same sequence, crystallized at different pH and cation. pH 6.8 and CaOAc, P212121 sp grp Molecular Replacement ; unspecified PDB 1JB8 'Same sequence, crystallized at pH 5.8 and MgOAc, I222 sp grp' unspecified PDB 1G4Q 'same sequence and same crystal solved by Direct Methods' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kopka, M.L.' 1 'Lavelle, L.' 2 'Han, G.W.' 3 'Ng, H.-L.' 4 'Dickerson, R.E.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H ; J.Mol.Biol. 334 653 665 2003 JMOBAK UK 0022-2836 0070 ? 14636594 10.1016/j.jmb.2003.09.057 1 'Direct Methods Determination of an RNA/DNA Hybrid Decamer at 1.15A Resolution' 'Acta Crystallogr.,Sect.D' 57 213 218 2001 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444900017595 2 ;Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation: Dimer Formation by Base-pair Swapping ; 'To be Published' ? ? ? 2003 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kopka, M.L.' 1 ? primary 'Lavelle, L.' 2 ? primary 'Han, G.W.' 3 ? primary 'Ng, H.-L.' 4 ? primary 'Dickerson, R.E.' 5 ? 1 'Han, G.W.' 6 ? 2 'Han, G.W.' 7 ? 2 'Kopka, M.L.' 8 ? 2 'Langs, D.' 9 ? 2 'Sawaya, M.R.' 10 ? 2 'Dickerson, R.E.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'" 3255.076 1 ? ? 'Polypurine Tract of HIV-1' ? 2 polymer syn "5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'" 2991.961 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 water nat water 18.015 128 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CAAAGAAAAG CAAAGAAAAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DT)(DT)(DT)(DC)(DT)(DT)(DT)(DG)' CTTTTCTTTG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 A n 1 3 A n 1 4 A n 1 5 G n 1 6 A n 1 7 A n 1 8 A n 1 9 A n 1 10 G n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n B 2 1 DC 1 11 11 DC C B . n B 2 2 DT 2 12 12 DT T B . n B 2 3 DT 3 13 13 DT T B . n B 2 4 DT 4 14 14 DT T B . n B 2 5 DT 5 15 15 DT T B . n B 2 6 DC 6 16 16 DC C B . n B 2 7 DT 7 17 17 DT T B . n B 2 8 DT 8 18 18 DT T B . n B 2 9 DT 9 19 19 DT T B . n B 2 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 31 31 MG MO4 A . D 3 MG 1 32 32 MG MO5 A . E 3 MG 1 33 33 MG MO5 A . F 3 MG 1 35 35 MG MO6 A . G 3 MG 1 36 36 MG MO5 A . H 3 MG 1 34 34 MG MO4 B . I 4 HOH 1 28 28 HOH HOH A . I 4 HOH 2 29 29 HOH HOH A . I 4 HOH 3 44 44 HOH HOH A . I 4 HOH 4 45 45 HOH HOH A . I 4 HOH 5 46 46 HOH HOH A . I 4 HOH 6 47 47 HOH HOH A . I 4 HOH 7 48 48 HOH HOH A . I 4 HOH 8 49 49 HOH HOH A . I 4 HOH 9 50 50 HOH HOH A . I 4 HOH 10 51 51 HOH HOH A . I 4 HOH 11 52 52 HOH HOH A . I 4 HOH 12 55 55 HOH HOH A . I 4 HOH 13 58 58 HOH HOH A . I 4 HOH 14 59 59 HOH HOH A . I 4 HOH 15 61 61 HOH HOH A . I 4 HOH 16 62 62 HOH HOH A . I 4 HOH 17 63 63 HOH HOH A . I 4 HOH 18 64 64 HOH HOH A . I 4 HOH 19 65 65 HOH HOH A . I 4 HOH 20 66 66 HOH HOH A . I 4 HOH 21 67 67 HOH HOH A . I 4 HOH 22 68 68 HOH HOH A . I 4 HOH 23 70 70 HOH HOH A . I 4 HOH 24 71 71 HOH HOH A . I 4 HOH 25 72 72 HOH HOH A . I 4 HOH 26 73 73 HOH HOH A . I 4 HOH 27 74 74 HOH HOH A . I 4 HOH 28 75 75 HOH HOH A . I 4 HOH 29 77 77 HOH HOH A . I 4 HOH 30 79 79 HOH HOH A . I 4 HOH 31 80 80 HOH HOH A . I 4 HOH 32 83 83 HOH HOH A . I 4 HOH 33 86 86 HOH HOH A . I 4 HOH 34 87 87 HOH HOH A . I 4 HOH 35 90 90 HOH HOH A . I 4 HOH 36 94 94 HOH HOH A . I 4 HOH 37 99 99 HOH HOH A . I 4 HOH 38 101 101 HOH HOH A . I 4 HOH 39 102 102 HOH HOH A . I 4 HOH 40 103 103 HOH HOH A . I 4 HOH 41 104 104 HOH HOH A . I 4 HOH 42 107 107 HOH HOH A . I 4 HOH 43 116 116 HOH HOH A . I 4 HOH 44 117 117 HOH HOH A . I 4 HOH 45 118 118 HOH HOH A . I 4 HOH 46 122 122 HOH HOH A . I 4 HOH 47 124 124 HOH HOH A . I 4 HOH 48 125 125 HOH HOH A . I 4 HOH 49 128 128 HOH HOH A . I 4 HOH 50 131 131 HOH HOH A . I 4 HOH 51 132 31 HOH MO4 A . I 4 HOH 52 133 31 HOH MO4 A . I 4 HOH 53 134 31 HOH MO4 A . I 4 HOH 54 136 32 HOH MO5 A . I 4 HOH 55 137 32 HOH MO5 A . I 4 HOH 56 138 32 HOH MO5 A . I 4 HOH 57 139 32 HOH MO5 A . I 4 HOH 58 140 32 HOH MO5 A . I 4 HOH 59 141 33 HOH MO5 A . I 4 HOH 60 142 33 HOH MO5 A . I 4 HOH 61 143 33 HOH MO5 A . I 4 HOH 62 144 33 HOH MO5 A . I 4 HOH 63 145 33 HOH MO5 A . I 4 HOH 64 147 34 HOH MO4 A . I 4 HOH 65 148 34 HOH MO4 A . I 4 HOH 66 149 34 HOH MO4 A . I 4 HOH 67 150 35 HOH MO6 A . I 4 HOH 68 151 35 HOH MO6 A . I 4 HOH 69 152 35 HOH MO6 A . I 4 HOH 70 154 35 HOH MO6 A . I 4 HOH 71 156 36 HOH MO5 A . I 4 HOH 72 157 36 HOH MO5 A . I 4 HOH 73 158 36 HOH MO5 A . I 4 HOH 74 159 36 HOH MO5 A . I 4 HOH 75 160 36 HOH MO5 A . J 4 HOH 1 27 27 HOH HOH B . J 4 HOH 2 30 30 HOH HOH B . J 4 HOH 3 37 37 HOH HOH B . J 4 HOH 4 38 38 HOH HOH B . J 4 HOH 5 39 39 HOH HOH B . J 4 HOH 6 40 40 HOH HOH B . J 4 HOH 7 41 41 HOH HOH B . J 4 HOH 8 42 42 HOH HOH B . J 4 HOH 9 43 43 HOH HOH B . J 4 HOH 10 53 53 HOH HOH B . J 4 HOH 11 54 54 HOH HOH B . J 4 HOH 12 56 56 HOH HOH B . J 4 HOH 13 57 57 HOH HOH B . J 4 HOH 14 60 60 HOH HOH B . J 4 HOH 15 69 69 HOH HOH B . J 4 HOH 16 76 76 HOH HOH B . J 4 HOH 17 78 78 HOH HOH B . J 4 HOH 18 81 81 HOH HOH B . J 4 HOH 19 82 82 HOH HOH B . J 4 HOH 20 84 84 HOH HOH B . J 4 HOH 21 85 85 HOH HOH B . J 4 HOH 22 88 88 HOH HOH B . J 4 HOH 23 89 89 HOH HOH B . J 4 HOH 24 91 91 HOH HOH B . J 4 HOH 25 92 92 HOH HOH B . J 4 HOH 26 93 93 HOH HOH B . J 4 HOH 27 95 95 HOH HOH B . J 4 HOH 28 96 96 HOH HOH B . J 4 HOH 29 97 97 HOH HOH B . J 4 HOH 30 98 98 HOH HOH B . J 4 HOH 31 100 100 HOH HOH B . J 4 HOH 32 105 105 HOH HOH B . J 4 HOH 33 106 106 HOH HOH B . J 4 HOH 34 108 108 HOH HOH B . J 4 HOH 35 109 109 HOH HOH B . J 4 HOH 36 110 110 HOH HOH B . J 4 HOH 37 111 111 HOH HOH B . J 4 HOH 38 112 112 HOH HOH B . J 4 HOH 39 113 113 HOH HOH B . J 4 HOH 40 114 114 HOH HOH B . J 4 HOH 41 115 115 HOH HOH B . J 4 HOH 42 119 119 HOH HOH B . J 4 HOH 43 120 120 HOH HOH B . J 4 HOH 44 121 121 HOH HOH B . J 4 HOH 45 123 123 HOH HOH B . J 4 HOH 46 126 126 HOH HOH B . J 4 HOH 47 127 127 HOH HOH B . J 4 HOH 48 129 129 HOH HOH B . J 4 HOH 49 130 130 HOH HOH B . J 4 HOH 50 135 31 HOH MO4 B . J 4 HOH 51 146 34 HOH MO4 B . J 4 HOH 52 153 35 HOH MO6 B . J 4 HOH 53 155 35 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 EPMR phasing . ? 3 SHELXL-97 refinement . ? 4 # _cell.entry_id 1PJO _cell.length_a 25.595 _cell.length_b 40.755 _cell.length_c 45.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1PJO _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting orthorhombic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1PJO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.09 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details ;magnesium acetate, beta-octylglucoside, spermidine hydrochloride, cacodylate, 2-methyl,2,4-pentanediol, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 278K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'magensium acetate' ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 beta-octylglucoside ? ? ? 1 4 1 'spermidine HCl' ? ? ? 1 5 1 2-methyl,2,4-pentanediol ? ? ? 1 6 2 'magensium acetate' ? ? ? 1 7 2 2-methyl,2,4-pentanediol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1999-10-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0720 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0720 # _reflns.entry_id 1PJO _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.10 _reflns.d_resolution_low 20.0 _reflns.number_all 18877 _reflns.number_obs 18327 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.13 _reflns_shell.percent_possible_all 74.6 _reflns_shell.Rmerge_I_obs 0.492 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.06 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs 74.6 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PJO _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 17409 _refine.ls_number_reflns_obs 17409 _refine.ls_number_reflns_R_free 918 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.117 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1166 _refine.ls_R_factor_R_free 0.1564 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters 5231 _refine.ls_number_restraints 19473 _refine.ls_percent_reflns_R_free 5. _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NDB ID AH0001' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 13.76 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 700 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 834 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.043 0.017 ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.019 0.011 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.10 _refine_ls_shell.d_res_low 1.13 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.492 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1PJO _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.114 _pdbx_refine.number_reflns_obs_4sig_cutoff 16382 _pdbx_refine.free_R_factor_4sig_cutoff 0.152 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 858 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.000 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1PJO _struct.title 'Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PJO _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'RNA/DNA hybrid; Polypurine Tract of HIV-1; Moleuclar Replacement; sugar conformation, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1PJO 1PJO ? ? ? 2 2 PDB 1PJO 1PJO ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PJO A 1 ? 10 ? 1PJO 1 ? 10 ? 1 10 2 2 1PJO B 1 ? 10 ? 1PJO 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 5 OP2 ? ? ? 1_555 D MG . MG ? ? A G 5 A MG 32 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc2 metalc ? ? A A 7 OP1 ? ? ? 1_555 G MG . MG ? ? A A 7 A MG 36 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc3 metalc ? ? A A 9 OP1 ? ? ? 1_555 C MG . MG ? ? A A 9 A MG 31 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc4 metalc ? ? A A 9 OP2 ? ? ? 1_555 E MG . MG ? ? A A 9 A MG 33 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc5 metalc ? ? A G 10 OP1 ? ? ? 3_755 H MG . MG ? ? A G 10 B MG 34 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 31 A HOH 132 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 31 A HOH 133 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 31 A HOH 134 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 B DT 8 OP2 ? ? A MG 31 B DT 18 3_745 ? ? ? ? ? ? ? 2.049 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 31 B HOH 135 2_655 ? ? ? ? ? ? ? 2.082 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 125 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 136 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 137 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 138 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 139 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 32 A HOH 140 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 33 A HOH 141 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 33 A HOH 142 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 33 A HOH 143 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 33 A HOH 144 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 33 A HOH 145 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 35 A HOH 150 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 35 A HOH 151 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 35 A HOH 152 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 35 A HOH 154 1_555 ? ? ? ? ? ? ? 1.945 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 35 B HOH 153 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 35 B HOH 155 1_555 ? ? ? ? ? ? ? 1.886 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 36 A HOH 156 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 36 A HOH 157 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 36 A HOH 158 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 36 A HOH 159 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc32 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 36 A HOH 160 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc33 metalc ? ? I HOH . O ? ? ? 3_755 H MG . MG ? ? A HOH 147 B MG 34 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc34 metalc ? ? I HOH . O ? ? ? 3_755 H MG . MG ? ? A HOH 148 B MG 34 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc35 metalc ? ? I HOH . O ? ? ? 2_654 H MG . MG ? ? A HOH 149 B MG 34 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc36 metalc ? ? B DT 8 OP1 ? ? ? 1_555 H MG . MG ? ? B DT 18 B MG 34 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc37 metalc ? ? B DG 10 OP1 B ? ? 4_555 H MG . MG ? ? B DG 20 B MG 34 1_555 ? ? ? ? ? ? ? 3.140 ? ? metalc38 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 34 B HOH 146 1_555 ? ? ? ? ? ? ? 1.931 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A A 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A A 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A A 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A A 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 125 ? 1_555 128.5 ? 2 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 136 ? 1_555 93.1 ? 3 O ? I HOH . ? A HOH 125 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 136 ? 1_555 125.2 ? 4 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 137 ? 1_555 91.3 ? 5 O ? I HOH . ? A HOH 125 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 137 ? 1_555 54.3 ? 6 O ? I HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 137 ? 1_555 173.7 ? 7 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 138 ? 1_555 91.1 ? 8 O ? I HOH . ? A HOH 125 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 138 ? 1_555 56.8 ? 9 O ? I HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 138 ? 1_555 94.5 ? 10 O ? I HOH . ? A HOH 137 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 138 ? 1_555 90.1 ? 11 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 139 ? 1_555 91.1 ? 12 O ? I HOH . ? A HOH 125 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 139 ? 1_555 118.6 ? 13 O ? I HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 139 ? 1_555 89.8 ? 14 O ? I HOH . ? A HOH 137 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 139 ? 1_555 85.5 ? 15 O ? I HOH . ? A HOH 138 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 139 ? 1_555 175.1 ? 16 OP2 ? A G 5 ? A G 5 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 176.6 ? 17 O ? I HOH . ? A HOH 125 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 54.2 ? 18 O ? I HOH . ? A HOH 136 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 83.5 ? 19 O ? I HOH . ? A HOH 137 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 92.1 ? 20 O ? I HOH . ? A HOH 138 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 89.2 ? 21 O ? I HOH . ? A HOH 139 ? 1_555 MG ? D MG . ? A MG 32 ? 1_555 O ? I HOH . ? A HOH 140 ? 1_555 88.9 ? 22 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 156 ? 1_555 90.4 ? 23 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 157 ? 1_555 78.4 ? 24 O ? I HOH . ? A HOH 156 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 157 ? 1_555 168.7 ? 25 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 158 ? 1_555 81.8 ? 26 O ? I HOH . ? A HOH 156 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 158 ? 1_555 68.7 ? 27 O ? I HOH . ? A HOH 157 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 158 ? 1_555 108.4 ? 28 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 159 ? 1_555 95.1 ? 29 O ? I HOH . ? A HOH 156 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 159 ? 1_555 116.9 ? 30 O ? I HOH . ? A HOH 157 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 159 ? 1_555 65.6 ? 31 O ? I HOH . ? A HOH 158 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 159 ? 1_555 173.8 ? 32 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 160 ? 1_555 176.9 ? 33 O ? I HOH . ? A HOH 156 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 160 ? 1_555 87.2 ? 34 O ? I HOH . ? A HOH 157 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 160 ? 1_555 104.0 ? 35 O ? I HOH . ? A HOH 158 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 160 ? 1_555 95.5 ? 36 O ? I HOH . ? A HOH 159 ? 1_555 MG ? G MG . ? A MG 36 ? 1_555 O ? I HOH . ? A HOH 160 ? 1_555 87.8 ? 37 OP1 ? A A 9 ? A A 9 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 132 ? 1_555 98.7 ? 38 OP1 ? A A 9 ? A A 9 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 133 ? 1_555 87.7 ? 39 O ? I HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 133 ? 1_555 172.8 ? 40 OP1 ? A A 9 ? A A 9 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 134 ? 1_555 86.2 ? 41 O ? I HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 134 ? 1_555 84.2 ? 42 O ? I HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? I HOH . ? A HOH 134 ? 1_555 92.9 ? 43 OP1 ? A A 9 ? A A 9 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 OP2 ? B DT 8 ? B DT 18 ? 3_745 91.3 ? 44 O ? I HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 OP2 ? B DT 8 ? B DT 18 ? 3_745 89.9 ? 45 O ? I HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 OP2 ? B DT 8 ? B DT 18 ? 3_745 93.3 ? 46 O ? I HOH . ? A HOH 134 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 OP2 ? B DT 8 ? B DT 18 ? 3_745 173.2 ? 47 OP1 ? A A 9 ? A A 9 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? J HOH . ? B HOH 135 ? 2_655 174.8 ? 48 O ? I HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? J HOH . ? B HOH 135 ? 2_655 82.8 ? 49 O ? I HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? J HOH . ? B HOH 135 ? 2_655 90.6 ? 50 O ? I HOH . ? A HOH 134 ? 1_555 MG ? C MG . ? A MG 31 ? 1_555 O ? J HOH . ? B HOH 135 ? 2_655 89.0 ? 51 OP2 ? B DT 8 ? B DT 18 ? 3_745 MG ? C MG . ? A MG 31 ? 1_555 O ? J HOH . ? B HOH 135 ? 2_655 93.7 ? 52 OP2 ? A A 9 ? A A 9 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 141 ? 1_555 93.7 ? 53 OP2 ? A A 9 ? A A 9 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 142 ? 1_555 85.7 ? 54 O ? I HOH . ? A HOH 141 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 142 ? 1_555 179.4 ? 55 OP2 ? A A 9 ? A A 9 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 143 ? 1_555 93.6 ? 56 O ? I HOH . ? A HOH 141 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 143 ? 1_555 88.7 ? 57 O ? I HOH . ? A HOH 142 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 143 ? 1_555 91.0 ? 58 OP2 ? A A 9 ? A A 9 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 144 ? 1_555 90.4 ? 59 O ? I HOH . ? A HOH 141 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 144 ? 1_555 88.4 ? 60 O ? I HOH . ? A HOH 142 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 144 ? 1_555 91.9 ? 61 O ? I HOH . ? A HOH 143 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 144 ? 1_555 175.1 ? 62 OP2 ? A A 9 ? A A 9 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 145 ? 1_555 172.9 ? 63 O ? I HOH . ? A HOH 141 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 145 ? 1_555 93.4 ? 64 O ? I HOH . ? A HOH 142 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 145 ? 1_555 87.2 ? 65 O ? I HOH . ? A HOH 143 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 145 ? 1_555 86.4 ? 66 O ? I HOH . ? A HOH 144 ? 1_555 MG ? E MG . ? A MG 33 ? 1_555 O ? I HOH . ? A HOH 145 ? 1_555 89.9 ? 67 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 147 ? 3_755 88.0 ? 68 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 148 ? 3_755 90.5 ? 69 O ? I HOH . ? A HOH 147 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 148 ? 3_755 88.8 ? 70 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 149 ? 2_654 172.2 ? 71 O ? I HOH . ? A HOH 147 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 149 ? 2_654 85.5 ? 72 O ? I HOH . ? A HOH 148 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? I HOH . ? A HOH 149 ? 2_654 85.0 ? 73 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 ? B DT 8 ? B DT 18 ? 1_555 91.1 ? 74 O ? I HOH . ? A HOH 147 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 ? B DT 8 ? B DT 18 ? 1_555 92.1 ? 75 O ? I HOH . ? A HOH 148 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 ? B DT 8 ? B DT 18 ? 1_555 178.2 ? 76 O ? I HOH . ? A HOH 149 ? 2_654 MG ? H MG . ? B MG 34 ? 1_555 OP1 ? B DT 8 ? B DT 18 ? 1_555 93.5 ? 77 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_555 64.5 ? 78 O ? I HOH . ? A HOH 147 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_555 142.7 ? 79 O ? I HOH . ? A HOH 148 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_555 114.7 ? 80 O ? I HOH . ? A HOH 149 ? 2_654 MG ? H MG . ? B MG 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_555 123.2 ? 81 OP1 ? B DT 8 ? B DT 18 ? 1_555 MG ? H MG . ? B MG 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_555 65.3 ? 82 OP1 ? A G 10 ? A G 10 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 97.7 ? 83 O ? I HOH . ? A HOH 147 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 173.5 ? 84 O ? I HOH . ? A HOH 148 ? 3_755 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 88.1 ? 85 O ? I HOH . ? A HOH 149 ? 2_654 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 88.5 ? 86 OP1 ? B DT 8 ? B DT 18 ? 1_555 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 90.8 ? 87 OP1 B B DG 10 ? B DG 20 ? 4_555 MG ? H MG . ? B MG 34 ? 1_555 O ? J HOH . ? B HOH 146 ? 1_555 43.6 ? 88 O ? I HOH . ? A HOH 150 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 151 ? 1_555 166.7 ? 89 O ? I HOH . ? A HOH 150 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 152 ? 1_555 80.5 ? 90 O ? I HOH . ? A HOH 151 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 152 ? 1_555 94.7 ? 91 O ? I HOH . ? A HOH 150 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 154 ? 1_555 97.6 ? 92 O ? I HOH . ? A HOH 151 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 154 ? 1_555 94.3 ? 93 O ? I HOH . ? A HOH 152 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? I HOH . ? A HOH 154 ? 1_555 84.2 ? 94 O ? I HOH . ? A HOH 150 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 153 ? 1_555 99.1 ? 95 O ? I HOH . ? A HOH 151 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 153 ? 1_555 84.6 ? 96 O ? I HOH . ? A HOH 152 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 153 ? 1_555 175.2 ? 97 O ? I HOH . ? A HOH 154 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 153 ? 1_555 100.6 ? 98 O ? I HOH . ? A HOH 150 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 155 ? 1_555 102.1 ? 99 O ? I HOH . ? A HOH 151 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 155 ? 1_555 64.9 ? 100 O ? I HOH . ? A HOH 152 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 155 ? 1_555 84.0 ? 101 O ? I HOH . ? A HOH 154 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 155 ? 1_555 155.0 ? 102 O ? J HOH . ? B HOH 153 ? 1_555 MG ? F MG . ? A MG 35 ? 1_555 O ? J HOH . ? B HOH 155 ? 1_555 91.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 31 ? 6 'BINDING SITE FOR RESIDUE MG A 31' AC2 Software A MG 32 ? 7 'BINDING SITE FOR RESIDUE MG A 32' AC3 Software A MG 33 ? 6 'BINDING SITE FOR RESIDUE MG A 33' AC4 Software B MG 34 ? 8 'BINDING SITE FOR RESIDUE MG B 34' AC5 Software A MG 35 ? 6 'BINDING SITE FOR RESIDUE MG A 35' AC6 Software A MG 36 ? 6 'BINDING SITE FOR RESIDUE MG A 36' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 9 ? A A 9 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH A 132 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 133 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 134 . ? 1_555 ? 5 AC1 6 DT B 8 ? DT B 18 . ? 3_745 ? 6 AC1 6 HOH J . ? HOH B 135 . ? 2_655 ? 7 AC2 7 G A 5 ? G A 5 . ? 1_555 ? 8 AC2 7 HOH I . ? HOH A 125 . ? 1_555 ? 9 AC2 7 HOH I . ? HOH A 136 . ? 1_555 ? 10 AC2 7 HOH I . ? HOH A 137 . ? 1_555 ? 11 AC2 7 HOH I . ? HOH A 138 . ? 1_555 ? 12 AC2 7 HOH I . ? HOH A 139 . ? 1_555 ? 13 AC2 7 HOH I . ? HOH A 140 . ? 1_555 ? 14 AC3 6 A A 9 ? A A 9 . ? 1_555 ? 15 AC3 6 HOH I . ? HOH A 141 . ? 1_555 ? 16 AC3 6 HOH I . ? HOH A 142 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH A 143 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH A 144 . ? 1_555 ? 19 AC3 6 HOH I . ? HOH A 145 . ? 1_555 ? 20 AC4 8 A A 9 ? A A 9 . ? 3_755 ? 21 AC4 8 G A 10 ? G A 10 . ? 3_755 ? 22 AC4 8 HOH I . ? HOH A 147 . ? 3_755 ? 23 AC4 8 HOH I . ? HOH A 148 . ? 3_755 ? 24 AC4 8 HOH I . ? HOH A 149 . ? 2_654 ? 25 AC4 8 DT B 8 ? DT B 18 . ? 1_555 ? 26 AC4 8 DG B 10 ? DG B 20 . ? 4_555 ? 27 AC4 8 HOH J . ? HOH B 146 . ? 1_555 ? 28 AC5 6 HOH I . ? HOH A 150 . ? 1_555 ? 29 AC5 6 HOH I . ? HOH A 151 . ? 1_555 ? 30 AC5 6 HOH I . ? HOH A 152 . ? 1_555 ? 31 AC5 6 HOH I . ? HOH A 154 . ? 1_555 ? 32 AC5 6 HOH J . ? HOH B 153 . ? 1_555 ? 33 AC5 6 HOH J . ? HOH B 155 . ? 1_555 ? 34 AC6 6 A A 7 ? A A 7 . ? 1_555 ? 35 AC6 6 HOH I . ? HOH A 156 . ? 1_555 ? 36 AC6 6 HOH I . ? HOH A 157 . ? 1_555 ? 37 AC6 6 HOH I . ? HOH A 158 . ? 1_555 ? 38 AC6 6 HOH I . ? HOH A 159 . ? 1_555 ? 39 AC6 6 HOH I . ? HOH A 160 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 20 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 146 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_455 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A C 1 ? ? "C1'" A C 1 ? ? 1.453 1.526 -0.073 0.008 N 2 1 "O4'" A C 1 ? ? "C1'" A C 1 ? ? 1.529 1.415 0.114 0.012 N 3 1 C5 A A 2 ? ? C6 A A 2 ? ? 1.349 1.406 -0.057 0.009 N 4 1 C4 A G 5 ? ? C5 A G 5 ? ? 1.336 1.379 -0.043 0.007 N 5 1 C5 A G 5 ? ? N7 A G 5 ? ? 1.341 1.388 -0.047 0.006 N 6 1 C5 A A 6 ? ? N7 A A 6 ? ? 1.425 1.388 0.037 0.006 N 7 1 C2 B DT 12 ? ? O2 B DT 12 ? ? 1.272 1.220 0.052 0.008 N 8 1 C5 B DT 13 ? ? C6 B DT 13 ? ? 1.280 1.339 -0.059 0.007 N 9 1 "C2'" B DT 18 ? ? "C1'" B DT 18 ? ? 1.456 1.518 -0.062 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A C 1 ? ? "C1'" A C 1 ? ? "C2'" A C 1 ? ? 129.43 114.00 15.43 1.30 N 2 1 "O4'" A C 1 ? ? "C1'" A C 1 ? ? N1 A C 1 ? ? 101.92 108.20 -6.28 0.80 N 3 1 C6 A C 1 ? ? N1 A C 1 ? ? C2 A C 1 ? ? 122.83 120.30 2.53 0.40 N 4 1 "O4'" A A 2 ? A "C1'" A A 2 ? A N9 A A 2 ? ? 113.15 108.50 4.65 0.70 N 5 1 "O4'" A A 2 ? B "C1'" A A 2 ? B N9 A A 2 ? ? 115.62 108.50 7.12 0.70 N 6 1 C8 A A 2 ? ? N9 A A 2 ? ? C4 A A 2 ? ? 108.38 105.80 2.58 0.40 N 7 1 N9 A A 2 ? ? C4 A A 2 ? ? C5 A A 2 ? ? 102.32 105.80 -3.48 0.40 N 8 1 "C3'" A A 2 ? A "O3'" A A 2 ? A P A A 3 ? A 130.17 119.70 10.47 1.20 Y 9 1 "C3'" A A 3 ? B "C2'" A A 3 ? B "C1'" A A 3 ? B 96.89 101.30 -4.41 0.70 N 10 1 "O4'" A A 3 ? B "C1'" A A 3 ? B N9 A A 3 ? ? 100.73 108.20 -7.47 0.80 N 11 1 OP1 A A 8 ? ? P A A 8 ? ? OP2 A A 8 ? ? 131.60 119.60 12.00 1.50 N 12 1 "O5'" A A 8 ? ? P A A 8 ? ? OP2 A A 8 ? ? 96.75 105.70 -8.95 0.90 N 13 1 N9 A G 10 ? ? "C1'" A G 10 ? ? "C2'" A G 10 ? ? 104.49 112.00 -7.51 1.10 N 14 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 118.12 121.90 -3.78 0.40 N 15 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 121.31 117.40 3.91 0.50 N 16 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? "C2'" B DT 12 ? ? 110.36 106.80 3.56 0.50 N 17 1 N1 B DT 12 ? ? C2 B DT 12 ? ? N3 B DT 12 ? ? 118.77 114.60 4.17 0.60 N 18 1 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 117.91 122.30 -4.39 0.60 N 19 1 C4 B DT 13 ? ? C5 B DT 13 ? ? C6 B DT 13 ? ? 113.84 118.00 -4.16 0.60 N 20 1 C5 B DT 13 ? ? C6 B DT 13 ? ? N1 B DT 13 ? ? 128.85 123.70 5.15 0.60 N 21 1 N3 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 126.06 122.30 3.76 0.60 N 22 1 N3 B DC 16 ? ? C4 B DC 16 ? ? C5 B DC 16 ? ? 119.04 121.90 -2.86 0.40 N 23 1 C4 B DC 16 ? ? C5 B DC 16 ? ? C6 B DC 16 ? ? 121.17 117.40 3.77 0.50 N 24 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.36 108.30 2.06 0.30 N 25 1 "O4'" B DT 19 ? B "C4'" B DT 19 ? B "C3'" B DT 19 ? B 96.78 104.50 -7.72 0.40 N 26 1 N1 B DT 19 ? ? "C1'" B DT 19 ? B "C2'" B DT 19 ? B 126.31 114.30 12.01 1.40 N 27 1 "O4'" B DT 19 ? B "C1'" B DT 19 ? B N1 B DT 19 ? ? 98.77 108.00 -9.23 0.70 N 28 1 "C3'" B DT 19 ? A "O3'" B DT 19 ? A P B DG 20 ? A 130.47 119.70 10.77 1.20 Y 29 1 P B DG 20 ? A "O5'" B DG 20 ? A "C5'" B DG 20 ? A 110.74 120.90 -10.16 1.60 N 30 1 "O4'" B DG 20 ? B "C1'" B DG 20 ? B N9 B DG 20 ? ? 114.97 108.30 6.67 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 G OP3 O N N 180 G P P N N 181 G OP1 O N N 182 G OP2 O N N 183 G "O5'" O N N 184 G "C5'" C N N 185 G "C4'" C N R 186 G "O4'" O N N 187 G "C3'" C N S 188 G "O3'" O N N 189 G "C2'" C N R 190 G "O2'" O N N 191 G "C1'" C N R 192 G N9 N Y N 193 G C8 C Y N 194 G N7 N Y N 195 G C5 C Y N 196 G C6 C N N 197 G O6 O N N 198 G N1 N N N 199 G C2 C N N 200 G N2 N N N 201 G N3 N N N 202 G C4 C Y N 203 G HOP3 H N N 204 G HOP2 H N N 205 G "H5'" H N N 206 G "H5''" H N N 207 G "H4'" H N N 208 G "H3'" H N N 209 G "HO3'" H N N 210 G "H2'" H N N 211 G "HO2'" H N N 212 G "H1'" H N N 213 G H8 H N N 214 G H1 H N N 215 G H21 H N N 216 G H22 H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 MG MG MG N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 G OP3 P sing N N 187 G OP3 HOP3 sing N N 188 G P OP1 doub N N 189 G P OP2 sing N N 190 G P "O5'" sing N N 191 G OP2 HOP2 sing N N 192 G "O5'" "C5'" sing N N 193 G "C5'" "C4'" sing N N 194 G "C5'" "H5'" sing N N 195 G "C5'" "H5''" sing N N 196 G "C4'" "O4'" sing N N 197 G "C4'" "C3'" sing N N 198 G "C4'" "H4'" sing N N 199 G "O4'" "C1'" sing N N 200 G "C3'" "O3'" sing N N 201 G "C3'" "C2'" sing N N 202 G "C3'" "H3'" sing N N 203 G "O3'" "HO3'" sing N N 204 G "C2'" "O2'" sing N N 205 G "C2'" "C1'" sing N N 206 G "C2'" "H2'" sing N N 207 G "O2'" "HO2'" sing N N 208 G "C1'" N9 sing N N 209 G "C1'" "H1'" sing N N 210 G N9 C8 sing Y N 211 G N9 C4 sing Y N 212 G C8 N7 doub Y N 213 G C8 H8 sing N N 214 G N7 C5 sing Y N 215 G C5 C6 sing N N 216 G C5 C4 doub Y N 217 G C6 O6 doub N N 218 G C6 N1 sing N N 219 G N1 C2 sing N N 220 G N1 H1 sing N N 221 G C2 N2 sing N N 222 G C2 N3 doub N N 223 G N2 H21 sing N N 224 G N2 H22 sing N N 225 G N3 C4 sing N N 226 HOH O H1 sing N N 227 HOH O H2 sing N N 228 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1PJO 'double helix' 1PJO 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B DG 10 1_555 0.119 -0.021 0.491 -27.194 -10.662 -0.177 1 A_C1:DG20_B A 1 ? B 20 ? 19 1 1 A A 2 1_555 B DT 9 1_555 0.022 -0.080 -0.104 1.404 -6.551 -3.717 2 A_A2:DT19_B A 2 ? B 19 ? 20 1 1 A A 3 1_555 B DT 8 1_555 -0.026 -0.153 0.172 6.447 -20.798 -0.138 3 A_A3:DT18_B A 3 ? B 18 ? 20 1 1 A A 4 1_555 B DT 7 1_555 0.032 -0.091 -0.007 2.831 -22.893 9.128 4 A_A4:DT17_B A 4 ? B 17 ? 20 1 1 A G 5 1_555 B DC 6 1_555 -0.261 -0.147 -0.212 -18.818 -2.124 -1.928 5 A_G5:DC16_B A 5 ? B 16 ? 19 1 1 A A 6 1_555 B DT 5 1_555 0.041 -0.113 -0.321 -16.761 -5.069 -2.448 6 A_A6:DT15_B A 6 ? B 15 ? 20 1 1 A A 7 1_555 B DT 4 1_555 0.012 -0.066 -0.120 -3.992 -6.621 0.188 7 A_A7:DT14_B A 7 ? B 14 ? 20 1 1 A A 8 1_555 B DT 3 1_555 -0.042 -0.184 -0.099 -0.342 -14.352 3.655 8 A_A8:DT13_B A 8 ? B 13 ? 20 1 1 A A 9 1_555 B DT 2 1_555 -0.074 -0.175 -0.144 -7.417 -4.175 0.338 9 A_A9:DT12_B A 9 ? B 12 ? 20 1 1 A G 10 1_555 B DC 1 1_555 -0.063 -0.058 0.127 5.838 -7.597 2.664 10 A_G10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B DG 10 1_555 A A 2 1_555 B DT 9 1_555 -0.303 0.536 2.834 1.756 8.894 26.703 -0.751 0.988 2.836 18.589 -3.671 28.173 1 AA_C1A2:DT19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A A 2 1_555 B DT 9 1_555 A A 3 1_555 B DT 8 1_555 0.203 -0.867 3.175 -5.458 2.272 34.011 -1.798 -1.152 3.045 3.849 9.244 34.506 2 AA_A2A3:DT18DT19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A A 3 1_555 B DT 8 1_555 A A 4 1_555 B DT 7 1_555 0.525 -1.154 3.455 -0.956 6.328 30.815 -3.336 -1.150 3.144 11.750 1.776 31.457 3 AA_A3A4:DT17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A A 4 1_555 B DT 7 1_555 A G 5 1_555 B DC 6 1_555 -1.774 -1.270 3.607 -9.135 20.005 38.890 -3.679 1.431 2.974 27.537 12.574 44.467 4 AA_A4G5:DC16DT17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A G 5 1_555 B DC 6 1_555 A A 6 1_555 B DT 5 1_555 0.094 -1.599 3.402 3.798 10.323 32.236 -4.331 0.428 2.767 17.951 -6.605 34.013 5 AA_G5A6:DT15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A A 6 1_555 B DT 5 1_555 A A 7 1_555 B DT 4 1_555 0.786 -1.567 3.118 1.464 7.506 26.401 -4.954 -1.333 2.619 16.011 -3.123 27.467 6 AA_A6A7:DT14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A A 7 1_555 B DT 4 1_555 A A 8 1_555 B DT 3 1_555 1.038 -2.062 3.215 1.315 6.169 25.757 -5.995 -1.945 2.705 13.582 -2.895 26.506 7 AA_A7A8:DT13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A A 8 1_555 B DT 3 1_555 A A 9 1_555 B DT 2 1_555 -1.340 -1.628 3.338 -4.106 6.225 37.689 -3.254 1.524 3.163 9.521 6.280 38.394 8 AA_A8A9:DT12DT13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A A 9 1_555 B DT 2 1_555 A G 10 1_555 B DC 1 1_555 0.755 -1.688 2.963 0.580 3.434 28.611 -4.064 -1.404 2.760 6.916 -1.168 28.818 9 AA_A9G10:DC11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_initial_refinement_model.accession_code 404D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ID AH0001' # _atom_sites.entry_id 1PJO _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.039070 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024537 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021863 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_