HEADER HELICASE 11-OCT-96 1PJR TITLE STRUCTURE OF DNA HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCRA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: NCA1503; SOURCE 5 GENE: PCRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 10 EXPRESSION_SYSTEM_GENE: PCRA KEYWDS DNA REPAIR, DNA REPLICATION, SOS RESPONSE, HELICASE, ATP-BINDING, KEYWDS 2 DNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.S.SUBRAMANYA,L.E.BIRD,J.A.BRANNIGAN,D.B.WIGLEY REVDAT 3 14-FEB-24 1PJR 1 REMARK REVDAT 2 24-FEB-09 1PJR 1 VERSN REVDAT 1 03-DEC-97 1PJR 0 JRNL AUTH H.S.SUBRAMANYA,L.E.BIRD,J.A.BRANNIGAN,D.B.WIGLEY JRNL TITL CRYSTAL STRUCTURE OF A DEXX BOX DNA HELICASE. JRNL REF NATURE V. 384 379 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8934527 JRNL DOI 10.1038/384379A0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.940 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-96 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40415 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.360 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.49333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.24667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.87000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.62333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.11667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 165 REMARK 465 SER A 166 REMARK 465 THR A 167 REMARK 465 LYS A 429 REMARK 465 LEU A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 TYR A 433 REMARK 465 ALA A 434 REMARK 465 ALA A 435 REMARK 465 ASP A 436 REMARK 465 HIS A 437 REMARK 465 GLU A 438 REMARK 465 LEU A 439 REMARK 465 SER A 440 REMARK 465 ASP A 543 REMARK 465 LEU A 544 REMARK 465 ASP A 545 REMARK 465 GLU A 546 REMARK 465 LEU A 547 REMARK 465 ASP A 548 REMARK 465 GLY A 549 REMARK 465 THR A 550 REMARK 465 GLU A 551 REMARK 465 GLN A 552 REMARK 465 ALA A 553 REMARK 465 ALA A 554 REMARK 465 GLU A 555 REMARK 465 ARG A 652 REMARK 465 GLN A 653 REMARK 465 ALA A 654 REMARK 465 GLY A 655 REMARK 465 ALA A 656 REMARK 465 SER A 657 REMARK 465 ARG A 658 REMARK 465 PRO A 659 REMARK 465 ALA A 660 REMARK 465 VAL A 661 REMARK 465 SER A 662 REMARK 465 ARG A 663 REMARK 465 PRO A 664 REMARK 465 GLN A 665 REMARK 465 ALA A 666 REMARK 465 SER A 667 REMARK 465 GLY A 668 REMARK 465 ALA A 669 REMARK 465 VAL A 670 REMARK 465 GLY A 671 REMARK 465 SER A 672 REMARK 465 TRP A 673 REMARK 465 LYS A 674 REMARK 465 VAL A 675 REMARK 465 GLY A 676 REMARK 465 ASP A 677 REMARK 465 ARG A 678 REMARK 465 ALA A 679 REMARK 465 ASN A 680 REMARK 465 HIS A 681 REMARK 465 ARG A 682 REMARK 465 LYS A 683 REMARK 465 TRP A 684 REMARK 465 GLY A 685 REMARK 465 ILE A 686 REMARK 465 GLY A 687 REMARK 465 THR A 688 REMARK 465 VAL A 689 REMARK 465 VAL A 690 REMARK 465 SER A 691 REMARK 465 VAL A 692 REMARK 465 ARG A 693 REMARK 465 GLY A 694 REMARK 465 GLY A 695 REMARK 465 GLY A 696 REMARK 465 ASP A 697 REMARK 465 ASP A 698 REMARK 465 GLN A 699 REMARK 465 GLU A 700 REMARK 465 LEU A 701 REMARK 465 ASP A 702 REMARK 465 ILE A 703 REMARK 465 ALA A 704 REMARK 465 PHE A 705 REMARK 465 PRO A 706 REMARK 465 SER A 707 REMARK 465 PRO A 708 REMARK 465 ILE A 709 REMARK 465 GLY A 710 REMARK 465 ILE A 711 REMARK 465 LYS A 712 REMARK 465 ARG A 713 REMARK 465 LEU A 714 REMARK 465 LEU A 715 REMARK 465 ALA A 716 REMARK 465 LYS A 717 REMARK 465 PHE A 718 REMARK 465 ALA A 719 REMARK 465 PRO A 720 REMARK 465 ILE A 721 REMARK 465 GLU A 722 REMARK 465 LYS A 723 REMARK 465 VAL A 724 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 11 NE2 HIS A 11 CD2 -0.071 REMARK 500 HIS A 43 NE2 HIS A 43 CD2 -0.070 REMARK 500 HIS A 53 NE2 HIS A 53 CD2 -0.066 REMARK 500 HIS A 93 NE2 HIS A 93 CD2 -0.067 REMARK 500 HIS A 188 NE2 HIS A 188 CD2 -0.070 REMARK 500 HIS A 302 NE2 HIS A 302 CD2 -0.069 REMARK 500 HIS A 521 NE2 HIS A 521 CD2 -0.080 REMARK 500 HIS A 587 NE2 HIS A 587 CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 57 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 57 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 88 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 88 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS A 137 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS A 137 CA - C - N ANGL. DEV. = -23.9 DEGREES REMARK 500 LYS A 137 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 233 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP A 259 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 259 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 289 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TRP A 312 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 312 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 350 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 359 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 SER A 425 N - CA - C ANGL. DEV. = 21.4 DEGREES REMARK 500 THR A 426 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 465 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP A 471 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 471 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 MET A 597 CG - SD - CE ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 623 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 623 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 -14.64 -169.18 REMARK 500 ARG A 101 0.90 -61.25 REMARK 500 GLU A 131 11.94 -66.97 REMARK 500 LYS A 132 -79.53 -145.58 REMARK 500 ILE A 134 87.08 -62.39 REMARK 500 ASP A 135 -91.32 -45.47 REMARK 500 LYS A 138 -22.24 103.25 REMARK 500 PHE A 139 55.81 -109.53 REMARK 500 ALA A 162 1.71 -66.10 REMARK 500 TYR A 169 -56.14 -25.91 REMARK 500 GLU A 241 -32.67 -39.24 REMARK 500 ARG A 346 -11.34 -177.33 REMARK 500 ARG A 352 2.30 -66.99 REMARK 500 ALA A 374 1.28 -69.83 REMARK 500 ARG A 420 109.96 -42.42 REMARK 500 ALA A 424 -65.41 172.98 REMARK 500 GLU A 447 48.76 -82.47 REMARK 500 MET A 450 -60.00 -158.24 REMARK 500 LEU A 453 126.50 -4.02 REMARK 500 ALA A 455 -53.78 9.85 REMARK 500 ALA A 458 30.01 -82.35 REMARK 500 ALA A 460 20.95 -68.61 REMARK 500 LEU A 461 -44.26 -133.24 REMARK 500 TYR A 477 10.95 -141.51 REMARK 500 ALA A 539 53.40 -95.93 REMARK 500 LEU A 540 -41.95 -163.44 REMARK 500 ILE A 541 46.65 -93.64 REMARK 500 ALA A 649 -175.09 45.60 REMARK 500 SER A 650 89.73 -170.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 135 PRO A 136 -145.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 1PJR A 1 724 UNP P56255 PCRA_BACST 1 724 SEQRES 1 A 724 MET ASN PHE LEU SER GLU GLN LEU LEU ALA HIS LEU ASN SEQRES 2 A 724 LYS GLU GLN GLN GLU ALA VAL ARG THR THR GLU GLY PRO SEQRES 3 A 724 LEU LEU ILE MET ALA GLY ALA GLY SER GLY LYS THR ARG SEQRES 4 A 724 VAL LEU THR HIS ARG ILE ALA TYR LEU MET ALA GLU LYS SEQRES 5 A 724 HIS VAL ALA PRO TRP ASN ILE LEU ALA ILE THR PHE THR SEQRES 6 A 724 ASN LYS ALA ALA ARG GLU MET ARG GLU ARG VAL GLN SER SEQRES 7 A 724 LEU LEU GLY GLY ALA ALA GLU ASP VAL TRP ILE SER THR SEQRES 8 A 724 PHE HIS SER MET CYS VAL ARG ILE LEU ARG ARG ASP ILE SEQRES 9 A 724 ASP ARG ILE GLY ILE ASN ARG ASN PHE SER ILE LEU ASP SEQRES 10 A 724 PRO THR ASP GLN LEU SER VAL MET LYS THR ILE LEU LYS SEQRES 11 A 724 GLU LYS ASN ILE ASP PRO LYS LYS PHE GLU PRO ARG THR SEQRES 12 A 724 ILE LEU GLY THR ILE SER ALA ALA LYS ASN GLU LEU LEU SEQRES 13 A 724 PRO PRO GLU GLN PHE ALA LYS ARG ALA SER THR TYR TYR SEQRES 14 A 724 GLU LYS VAL VAL SER ASP VAL TYR GLN GLU TYR GLN GLN SEQRES 15 A 724 ARG LEU LEU ARG ASN HIS SER LEU ASP PHE ASP ASP LEU SEQRES 16 A 724 ILE MET THR THR ILE GLN LEU PHE ASP ARG VAL PRO ASP SEQRES 17 A 724 VAL LEU HIS TYR TYR GLN TYR LYS PHE GLN TYR ILE HIS SEQRES 18 A 724 ILE ASP GLU TYR GLN ASP THR ASN ARG ALA GLN TYR THR SEQRES 19 A 724 LEU VAL LYS LYS LEU ALA GLU ARG PHE GLN ASN ILE CYS SEQRES 20 A 724 ALA VAL GLY ASP ALA ASP GLN SER ILE TYR ARG TRP ARG SEQRES 21 A 724 GLY ALA ASP ILE GLN ASN ILE LEU SER PHE GLU ARG ASP SEQRES 22 A 724 TYR PRO ASN ALA LYS VAL ILE LEU LEU GLU GLN ASN TYR SEQRES 23 A 724 ARG SER THR LYS ARG ILE LEU GLN ALA ALA ASN GLU VAL SEQRES 24 A 724 ILE GLU HIS ASN VAL ASN ARG LYS PRO LYS ARG ILE TRP SEQRES 25 A 724 THR GLU ASN PRO GLU GLY LYS PRO ILE LEU TYR TYR GLU SEQRES 26 A 724 ALA MET ASN GLU ALA ASP GLU ALA GLN PHE VAL ALA GLY SEQRES 27 A 724 ARG ILE ARG GLU ALA VAL GLU ARG GLY GLU ARG ARG TYR SEQRES 28 A 724 ARG ASP PHE ALA VAL LEU TYR ARG THR ASN ALA GLN SER SEQRES 29 A 724 ARG VAL MET GLU GLU MET LEU LEU LYS ALA ASN ILE PRO SEQRES 30 A 724 TYR GLN ILE VAL GLY GLY LEU LYS PHE TYR ASP ARG LYS SEQRES 31 A 724 GLU ILE LYS ASP ILE LEU ALA TYR LEU ARG VAL ILE ALA SEQRES 32 A 724 ASN PRO ASP ASP ASP LEU SER LEU LEU ARG ILE ILE ASN SEQRES 33 A 724 VAL PRO LYS ARG GLY ILE GLY ALA SER THR ILE ASP LYS SEQRES 34 A 724 LEU VAL ARG TYR ALA ALA ASP HIS GLU LEU SER LEU PHE SEQRES 35 A 724 GLU ALA LEU GLY GLU LEU GLU MET ILE GLY LEU GLY ALA SEQRES 36 A 724 LYS ALA ALA GLY ALA LEU ALA ALA PHE ARG SER GLN LEU SEQRES 37 A 724 GLU GLN TRP THR GLN LEU GLN GLU TYR VAL SER VAL THR SEQRES 38 A 724 GLU LEU VAL GLU GLU VAL LEU ASP LYS SER GLY TYR ARG SEQRES 39 A 724 GLU MET LEU LYS ALA GLU ARG THR ILE GLU ALA GLN SER SEQRES 40 A 724 ARG LEU GLU ASN LEU ASP GLU PHE LEU SER VAL THR LYS SEQRES 41 A 724 HIS PHE GLU ASN VAL SER ASP ASP LYS SER LEU ILE ALA SEQRES 42 A 724 PHE LEU THR ASP LEU ALA LEU ILE SER ASP LEU ASP GLU SEQRES 43 A 724 LEU ASP GLY THR GLU GLN ALA ALA GLU GLY ASP ALA VAL SEQRES 44 A 724 MET LEU MET THR LEU HIS ALA ALA LYS GLY LEU GLU PHE SEQRES 45 A 724 PRO VAL VAL PHE LEU ILE GLY MET GLU GLU GLY ILE PHE SEQRES 46 A 724 PRO HIS ASN ARG SER LEU GLU ASP ASP ASP GLU MET GLU SEQRES 47 A 724 GLU GLU ARG ARG LEU ALA TYR VAL GLY ILE THR ARG ALA SEQRES 48 A 724 GLU GLU GLU LEU VAL LEU THR SER ALA GLN MET ARG THR SEQRES 49 A 724 LEU PHE GLY ASN ILE GLN MET ASP PRO PRO SER ARG PHE SEQRES 50 A 724 LEU ASN GLU ILE PRO ALA HIS LEU LEU GLU THR ALA SER SEQRES 51 A 724 ARG ARG GLN ALA GLY ALA SER ARG PRO ALA VAL SER ARG SEQRES 52 A 724 PRO GLN ALA SER GLY ALA VAL GLY SER TRP LYS VAL GLY SEQRES 53 A 724 ASP ARG ALA ASN HIS ARG LYS TRP GLY ILE GLY THR VAL SEQRES 54 A 724 VAL SER VAL ARG GLY GLY GLY ASP ASP GLN GLU LEU ASP SEQRES 55 A 724 ILE ALA PHE PRO SER PRO ILE GLY ILE LYS ARG LEU LEU SEQRES 56 A 724 ALA LYS PHE ALA PRO ILE GLU LYS VAL FORMUL 2 HOH *225(H2 O) HELIX 1 1 PHE A 3 LEU A 9 1 7 HELIX 2 2 LYS A 14 ARG A 21 1 8 HELIX 3 3 LYS A 37 ALA A 50 1 14 HELIX 4 4 PRO A 56 ASN A 58 5 3 HELIX 5 5 ASN A 66 ALA A 84 1 19 HELIX 6 6 PHE A 92 ILE A 107 1 16 HELIX 7 7 PRO A 118 LYS A 130 1 13 HELIX 8 8 PRO A 141 GLU A 154 1 14 HELIX 9 9 PRO A 158 LYS A 163 1 6 HELIX 10 10 TYR A 169 ARG A 186 1 18 HELIX 11 11 ASP A 194 ARG A 205 1 12 HELIX 12 12 PRO A 207 LYS A 216 1 10 HELIX 13 13 TYR A 225 ASP A 227 5 3 HELIX 14 14 ARG A 230 ALA A 240 1 11 HELIX 15 15 ALA A 252 GLN A 254 5 3 HELIX 16 16 ARG A 258 ARG A 260 5 3 HELIX 17 17 GLN A 265 ASP A 273 1 9 HELIX 18 18 LYS A 290 HIS A 302 1 13 HELIX 19 19 GLU A 329 VAL A 344 1 16 HELIX 20 20 TYR A 351 ASP A 353 5 3 HELIX 21 21 ASN A 361 LYS A 373 5 13 HELIX 22 22 LYS A 390 ALA A 403 1 14 HELIX 23 23 ASP A 408 ILE A 415 1 8 HELIX 24 24 PHE A 442 GLY A 446 1 5 HELIX 25 25 LEU A 448 ILE A 451 1 4 HELIX 26 26 ALA A 462 GLU A 476 1 15 HELIX 27 27 VAL A 480 LYS A 490 1 11 HELIX 28 28 TYR A 493 GLU A 500 1 8 HELIX 29 29 ILE A 503 VAL A 525 1 23 HELIX 30 30 LEU A 531 ASP A 537 1 7 HELIX 31 31 LEU A 564 ALA A 567 5 4 HELIX 32 32 ASN A 588 LEU A 591 5 4 HELIX 33 33 ASP A 594 ARG A 610 1 17 HELIX 34 34 ARG A 636 GLU A 640 1 5 HELIX 35 35 ALA A 643 LEU A 645 5 3 SHEET 1 A 6 LYS A 278 LEU A 282 0 SHEET 2 A 6 LEU A 27 ALA A 31 1 N LEU A 28 O LYS A 278 SHEET 3 A 6 ILE A 246 GLY A 250 1 N ALA A 248 O LEU A 27 SHEET 4 A 6 TYR A 219 ILE A 222 1 N ILE A 220 O CYS A 247 SHEET 5 A 6 ILE A 59 THR A 63 1 N LEU A 60 O TYR A 219 SHEET 6 A 6 TRP A 88 THR A 91 1 N TRP A 88 O ALA A 61 SHEET 1 B 7 LEU A 646 THR A 648 0 SHEET 2 B 7 ILE A 321 ALA A 326 1 N ILE A 321 O GLU A 647 SHEET 3 B 7 GLU A 614 ALA A 620 1 N LEU A 617 O LEU A 322 SHEET 4 B 7 VAL A 574 LEU A 577 1 N VAL A 575 O GLU A 614 SHEET 5 B 7 PHE A 354 TYR A 358 1 N ALA A 355 O VAL A 574 SHEET 6 B 7 VAL A 559 THR A 563 1 N MET A 560 O VAL A 356 SHEET 7 B 7 TYR A 378 VAL A 381 1 N GLN A 379 O VAL A 559 SHEET 1 C 2 ARG A 623 LEU A 625 0 SHEET 2 C 2 ASN A 628 GLN A 630 -1 N GLN A 630 O ARG A 623 CISPEP 1 VAL A 417 PRO A 418 0 -15.45 CISPEP 2 PHE A 585 PRO A 586 0 11.18 CRYST1 139.060 139.060 111.740 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007191 0.004152 0.000000 0.00000 SCALE2 0.000000 0.008304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008949 0.00000