HEADER SIGNALING PROTEIN 01-JUL-03 1PW9 TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF AN ACTIVE RECOMBINANT FRAGMENT OF TITLE 2 HUMAN LUNG SURFACTANT PROTEIN D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN D; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 179-355; COMPND 5 SYNONYM: SP-D, PSP-D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFTPD, SFTP4, PSPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COLLECTIN, C-TYPE LECTIN, ALPHA-HELICAL COILED-COIL, CARBOHYDRATE KEYWDS 2 RECOGNITION DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SHRIVE,H.A.THARIA,P.STRONG,U.KISHORE,I.BURNS,P.J.RIZKALLAH, AUTHOR 2 K.B.REID,T.J.GREENHOUGH REVDAT 5 16-AUG-23 1PW9 1 REMARK REVDAT 4 27-OCT-21 1PW9 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1PW9 1 VERSN REVDAT 2 12-AUG-03 1PW9 1 SEQADV REVDAT 1 05-AUG-03 1PW9 0 JRNL AUTH A.K.SHRIVE,H.A.THARIA,P.STRONG,U.KISHORE,I.BURNS, JRNL AUTH 2 P.J.RIZKALLAH,K.B.REID,T.J.GREENHOUGH JRNL TITL HIGH RESOLUTION STRUCTURAL INSIGHTS INTO LIGAND BINDING AND JRNL TITL 2 IMMUNE CELL RECOGNITION BY HUMAN LUNG SURFACTANT PROTEIN D JRNL REF J.MOL.BIOL. V. 331 509 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12888356 JRNL DOI 10.1016/S0022-2836(03)00761-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.HAKANSSON,N.K.LIM,H.J.HOPPE,K.B.REID REMARK 1 TITL CRYSTAL STRUCTURE OF THE TRIMERIC ALPHA-HELICAL COILED-COIL REMARK 1 TITL 2 AND THE THREE LECTIN DOMAINS OF HUMAN LUNG SURFACTANT REMARK 1 TITL 3 PROTEIN D REMARK 1 REF STRUCTURE V. 7 255 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(99)80036-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 84773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4257 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 506 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1PWB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.26000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 GLY A 182 REMARK 465 LEU A 183 REMARK 465 LYS A 184 REMARK 465 GLY A 185 REMARK 465 ASP A 186 REMARK 465 LYS A 187 REMARK 465 GLY A 188 REMARK 465 ILE A 189 REMARK 465 PRO A 190 REMARK 465 GLY A 191 REMARK 465 ASP A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 ALA A 195 REMARK 465 LYS A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 LEU A 201 REMARK 465 PRO A 202 REMARK 465 ASP A 203 REMARK 465 VAL A 204 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 PRO B 181 REMARK 465 GLY B 182 REMARK 465 LEU B 183 REMARK 465 LYS B 184 REMARK 465 GLY B 185 REMARK 465 ASP B 186 REMARK 465 LYS B 187 REMARK 465 GLY B 188 REMARK 465 ILE B 189 REMARK 465 PRO B 190 REMARK 465 GLY B 191 REMARK 465 ASP B 192 REMARK 465 LYS B 193 REMARK 465 GLY B 194 REMARK 465 ALA B 195 REMARK 465 LYS B 196 REMARK 465 GLY B 197 REMARK 465 GLU B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 LEU B 201 REMARK 465 PRO B 202 REMARK 465 ASP B 203 REMARK 465 VAL B 204 REMARK 465 GLY C 179 REMARK 465 SER C 180 REMARK 465 PRO C 181 REMARK 465 GLY C 182 REMARK 465 LEU C 183 REMARK 465 LYS C 184 REMARK 465 GLY C 185 REMARK 465 ASP C 186 REMARK 465 LYS C 187 REMARK 465 GLY C 188 REMARK 465 ILE C 189 REMARK 465 PRO C 190 REMARK 465 GLY C 191 REMARK 465 ASP C 192 REMARK 465 LYS C 193 REMARK 465 GLY C 194 REMARK 465 ALA C 195 REMARK 465 LYS C 196 REMARK 465 GLY C 197 REMARK 465 GLU C 198 REMARK 465 SER C 199 REMARK 465 GLY C 200 REMARK 465 LEU C 201 REMARK 465 PRO C 202 REMARK 465 ASP C 203 REMARK 465 VAL C 204 REMARK 465 ALA C 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 316 49.47 -142.93 REMARK 500 SER A 328 45.22 -155.18 REMARK 500 PRO B 307 -9.82 -57.03 REMARK 500 SER B 328 39.04 -141.55 REMARK 500 ASN C 316 46.73 -140.60 REMARK 500 SER C 328 35.74 -143.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 232 OE1 REMARK 620 2 GLU A 232 OE2 43.3 REMARK 620 3 HOH A 449 O 102.9 68.6 REMARK 620 4 HOH A 455 O 107.4 76.3 80.7 REMARK 620 5 GLU B 232 OE1 76.3 108.5 101.9 175.0 REMARK 620 6 HOH B 428 O 163.7 149.2 82.7 88.6 87.5 REMARK 620 7 GLU C 232 OE1 70.8 101.4 168.8 92.3 85.9 106.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 297 OD2 REMARK 620 2 ASP A 297 OD1 48.8 REMARK 620 3 GLU A 301 OE2 72.8 119.7 REMARK 620 4 GLU A 301 OE1 74.4 95.7 49.1 REMARK 620 5 ASP A 324 OD1 149.7 158.0 76.9 84.8 REMARK 620 6 GLU A 329 O 129.1 91.5 144.6 151.2 78.4 REMARK 620 7 ASP A 330 OD1 106.8 70.4 123.5 75.7 88.6 80.6 REMARK 620 8 HOH A 425 O 84.6 104.7 80.2 128.6 91.8 75.6 155.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 301 OE1 REMARK 620 2 ASP A 330 OD1 74.7 REMARK 620 3 ASP A 330 OD2 118.7 51.2 REMARK 620 4 HOH A 421 O 85.5 103.8 82.2 REMARK 620 5 HOH A 437 O 74.1 97.0 131.6 145.9 REMARK 620 6 HOH A 469 O 95.5 168.8 140.0 80.4 74.8 REMARK 620 7 HOH A 524 O 140.4 89.9 72.7 134.0 71.8 94.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 ASN A 323 OD1 78.9 REMARK 620 3 GLU A 329 OE1 150.6 76.3 REMARK 620 4 ASN A 341 OD1 66.6 144.9 138.6 REMARK 620 5 ASP A 342 OD1 75.3 85.2 86.8 92.0 REMARK 620 6 ASP A 342 O 125.0 131.7 64.7 77.1 66.0 REMARK 620 7 HOH A 416 O 131.1 122.3 76.6 79.3 142.0 76.1 REMARK 620 8 HOH A 447 O 74.2 83.5 118.1 81.1 149.1 139.4 66.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD1 REMARK 620 2 ASP B 297 OD2 51.6 REMARK 620 3 GLU B 301 OE2 121.5 72.8 REMARK 620 4 GLU B 301 OE1 97.5 78.6 50.1 REMARK 620 5 ASP B 324 OD1 156.3 147.6 74.9 80.0 REMARK 620 6 GLU B 329 O 92.9 132.5 143.4 144.2 77.0 REMARK 620 7 ASP B 330 OD1 67.7 107.1 122.4 72.9 89.2 79.7 REMARK 620 8 HOH B 422 O 105.2 83.9 82.9 132.8 93.3 75.9 154.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 301 OE1 REMARK 620 2 ASP B 330 OD1 77.9 REMARK 620 3 ASP B 330 OD2 121.0 52.7 REMARK 620 4 HOH B 417 O 84.1 153.9 152.2 REMARK 620 5 HOH B 439 O 83.9 80.1 112.6 79.3 REMARK 620 6 HOH B 445 O 89.0 103.8 75.8 94.5 171.0 REMARK 620 7 HOH B 470 O 163.4 116.9 75.5 79.5 91.2 94.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 321 OE1 REMARK 620 2 ASN B 323 OD1 75.3 REMARK 620 3 GLU B 329 OE1 143.7 72.1 REMARK 620 4 ASN B 341 OD1 67.8 141.4 146.5 REMARK 620 5 ASP B 342 OD1 73.9 84.5 87.5 95.7 REMARK 620 6 ASP B 342 O 126.5 139.0 73.6 75.7 72.2 REMARK 620 7 HOH B 406 O 133.8 115.5 76.0 84.1 147.6 76.4 REMARK 620 8 HOH B 418 O 73.1 77.2 113.7 81.6 145.4 138.3 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 297 OD2 REMARK 620 2 ASP C 297 OD1 49.5 REMARK 620 3 GLU C 301 OE1 78.6 96.6 REMARK 620 4 GLU C 301 OE2 76.1 122.8 50.5 REMARK 620 5 ASP C 324 OD1 152.3 155.6 83.9 76.2 REMARK 620 6 GLU C 329 O 128.5 89.9 145.5 145.3 76.7 REMARK 620 7 ASP C 330 OD1 109.4 71.2 73.3 122.0 85.7 76.8 REMARK 620 8 HOH C 409 O 83.4 102.9 134.2 84.4 93.8 76.1 152.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 301 OE1 REMARK 620 2 ASP C 330 OD1 77.2 REMARK 620 3 ASP C 330 OD2 120.5 50.5 REMARK 620 4 HOH C 421 O 84.6 72.9 101.9 REMARK 620 5 HOH C 450 O 88.1 106.5 82.8 172.7 REMARK 620 6 HOH C 454 O 85.9 154.1 152.7 86.2 92.2 REMARK 620 7 HOH C 500 O 162.9 111.5 74.5 84.0 102.7 80.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 321 OE1 REMARK 620 2 ASN C 323 OD1 71.7 REMARK 620 3 GLU C 329 OE1 144.6 77.7 REMARK 620 4 ASN C 341 OD1 67.2 137.3 144.9 REMARK 620 5 ASP C 342 O 124.4 139.9 71.4 76.2 REMARK 620 6 ASP C 342 OD1 72.6 86.0 88.3 92.2 68.4 REMARK 620 7 HOH C 411 O 133.8 118.9 77.0 83.7 78.4 146.6 REMARK 620 8 HOH C 422 O 73.8 76.1 115.7 81.9 140.7 145.4 67.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B08 RELATED DB: PDB REMARK 900 YEAST EXPRESSED RECOMBINANT FRAGMENT OF HSP-D TO 2.3 A REMARK 900 RELATED ID: 1PWB RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH MALTOSE DBREF 1PW9 A 179 355 UNP P35247 SFTPD_HUMAN 199 375 DBREF 1PW9 B 179 355 UNP P35247 SFTPD_HUMAN 199 375 DBREF 1PW9 C 179 355 UNP P35247 SFTPD_HUMAN 199 375 SEQADV 1PW9 SER A 180 UNP P35247 PRO 200 ENGINEERED MUTATION SEQADV 1PW9 SER B 180 UNP P35247 PRO 200 ENGINEERED MUTATION SEQADV 1PW9 SER C 180 UNP P35247 PRO 200 ENGINEERED MUTATION SEQRES 1 A 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 A 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 A 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 A 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 A 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 A 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 A 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 A 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 A 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 A 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 A 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 A 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 A 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 A 177 LYS ARG LEU VAL VAL CYS GLU PHE SEQRES 1 B 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 B 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 B 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 B 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 B 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 B 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 B 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 B 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 B 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 B 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 B 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 B 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 B 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 B 177 LYS ARG LEU VAL VAL CYS GLU PHE SEQRES 1 C 177 GLY SER PRO GLY LEU LYS GLY ASP LYS GLY ILE PRO GLY SEQRES 2 C 177 ASP LYS GLY ALA LYS GLY GLU SER GLY LEU PRO ASP VAL SEQRES 3 C 177 ALA SER LEU ARG GLN GLN VAL GLU ALA LEU GLN GLY GLN SEQRES 4 C 177 VAL GLN HIS LEU GLN ALA ALA PHE SER GLN TYR LYS LYS SEQRES 5 C 177 VAL GLU LEU PHE PRO ASN GLY GLN SER VAL GLY GLU LYS SEQRES 6 C 177 ILE PHE LYS THR ALA GLY PHE VAL LYS PRO PHE THR GLU SEQRES 7 C 177 ALA GLN LEU LEU CYS THR GLN ALA GLY GLY GLN LEU ALA SEQRES 8 C 177 SER PRO ARG SER ALA ALA GLU ASN ALA ALA LEU GLN GLN SEQRES 9 C 177 LEU VAL VAL ALA LYS ASN GLU ALA ALA PHE LEU SER MET SEQRES 10 C 177 THR ASP SER LYS THR GLU GLY LYS PHE THR TYR PRO THR SEQRES 11 C 177 GLY GLU SER LEU VAL TYR SER ASN TRP ALA PRO GLY GLU SEQRES 12 C 177 PRO ASN ASP ASP GLY GLY SER GLU ASP CYS VAL GLU ILE SEQRES 13 C 177 PHE THR ASN GLY LYS TRP ASN ASP ARG ALA CYS GLY GLU SEQRES 14 C 177 LYS ARG LEU VAL VAL CYS GLU PHE HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HET CA C 401 1 HET CA C 402 1 HET CA C 403 1 HETNAM CA CALCIUM ION FORMUL 4 CA 10(CA 2+) FORMUL 14 HOH *419(H2 O) HELIX 1 1 ALA A 205 PHE A 234 1 30 HELIX 2 2 PHE A 254 ALA A 264 1 11 HELIX 3 3 SER A 273 ASN A 288 1 16 HELIX 4 4 ASP A 324 SER A 328 5 5 HELIX 5 5 ALA B 205 PHE B 234 1 30 HELIX 6 6 PHE B 254 ALA B 264 1 11 HELIX 7 7 SER B 273 ASN B 288 1 16 HELIX 8 8 ASP B 324 SER B 328 5 5 HELIX 9 9 SER C 206 PHE C 234 1 29 HELIX 10 10 PHE C 254 ALA C 264 1 11 HELIX 11 11 SER C 273 ASN C 288 1 16 HELIX 12 12 ASP C 324 SER C 328 5 5 SHEET 1 A 4 GLY A 237 VAL A 240 0 SHEET 2 A 4 LYS A 243 PRO A 253 -1 O PHE A 245 N GLN A 238 SHEET 3 A 4 LYS A 348 PHE A 355 -1 O PHE A 355 N ILE A 244 SHEET 4 A 4 GLN A 267 LEU A 268 -1 N GLN A 267 O GLU A 354 SHEET 1 B 3 ALA A 291 PHE A 292 0 SHEET 2 B 3 CYS A 331 ILE A 334 -1 O ILE A 334 N ALA A 291 SHEET 3 B 3 TRP A 340 ARG A 343 -1 O ARG A 343 N CYS A 331 SHEET 1 C 4 GLY B 237 VAL B 240 0 SHEET 2 C 4 LYS B 243 PRO B 253 -1 O PHE B 245 N GLN B 238 SHEET 3 C 4 LYS B 348 PHE B 355 -1 O CYS B 353 N LYS B 246 SHEET 4 C 4 GLN B 267 LEU B 268 -1 N GLN B 267 O GLU B 354 SHEET 1 D 3 ALA B 291 THR B 296 0 SHEET 2 D 3 CYS B 331 ILE B 334 -1 O ILE B 334 N ALA B 291 SHEET 3 D 3 TRP B 340 ARG B 343 -1 O ARG B 343 N CYS B 331 SHEET 1 E 4 GLY C 237 VAL C 240 0 SHEET 2 E 4 LYS C 243 PRO C 253 -1 O LYS C 243 N VAL C 240 SHEET 3 E 4 LYS C 348 PHE C 355 -1 O CYS C 353 N LYS C 246 SHEET 4 E 4 GLN C 267 LEU C 268 -1 N GLN C 267 O GLU C 354 SHEET 1 F 4 LYS C 303 THR C 305 0 SHEET 2 F 4 ALA C 291 THR C 300 -1 N THR C 296 O THR C 305 SHEET 3 F 4 CYS C 331 ILE C 334 -1 O ILE C 334 N ALA C 291 SHEET 4 F 4 TRP C 340 ARG C 343 -1 O ARG C 343 N CYS C 331 SSBOND 1 CYS A 261 CYS A 353 1555 1555 2.04 SSBOND 2 CYS A 331 CYS A 345 1555 1555 2.04 SSBOND 3 CYS B 261 CYS B 353 1555 1555 2.04 SSBOND 4 CYS B 331 CYS B 345 1555 1555 2.05 SSBOND 5 CYS C 261 CYS C 353 1555 1555 2.04 SSBOND 6 CYS C 331 CYS C 345 1555 1555 2.05 LINK OE1 GLU A 232 CA CA A 404 1555 1555 2.38 LINK OE2 GLU A 232 CA CA A 404 1555 1555 3.21 LINK OD2 ASP A 297 CA CA A 402 1555 1555 2.52 LINK OD1 ASP A 297 CA CA A 402 1555 1555 2.76 LINK OE2 GLU A 301 CA CA A 402 1555 1555 2.68 LINK OE1 GLU A 301 CA CA A 402 1555 1555 2.57 LINK OE1 GLU A 301 CA CA A 403 1555 1555 2.58 LINK OE1 GLU A 321 CA CA A 401 1555 1555 2.53 LINK OD1 ASN A 323 CA CA A 401 1555 1555 2.37 LINK OD1 ASP A 324 CA CA A 402 1555 1555 2.47 LINK OE1 GLU A 329 CA CA A 401 1555 1555 2.40 LINK O GLU A 329 CA CA A 402 1555 1555 2.49 LINK OD1 ASP A 330 CA CA A 402 1555 1555 2.49 LINK OD1 ASP A 330 CA CA A 403 1555 1555 2.54 LINK OD2 ASP A 330 CA CA A 403 1555 1555 2.52 LINK OD1 ASN A 341 CA CA A 401 1555 1555 2.36 LINK OD1 ASP A 342 CA CA A 401 1555 1555 2.27 LINK O ASP A 342 CA CA A 401 1555 1555 2.76 LINK CA CA A 401 O HOH A 416 1555 1555 2.64 LINK CA CA A 401 O HOH A 447 1555 1555 2.56 LINK CA CA A 402 O HOH A 425 1555 1555 2.29 LINK CA CA A 403 O HOH A 421 1555 1555 2.22 LINK CA CA A 403 O HOH A 437 1555 1555 2.45 LINK CA CA A 403 O HOH A 469 1555 1555 2.25 LINK CA CA A 403 O HOH A 524 1555 1555 2.56 LINK CA CA A 404 O HOH A 449 1555 1555 2.45 LINK CA CA A 404 O HOH A 455 1555 1555 2.26 LINK CA CA A 404 OE1 GLU B 232 1555 1555 2.26 LINK CA CA A 404 O HOH B 428 1555 1555 2.22 LINK CA CA A 404 OE1 GLU C 232 1555 1555 2.21 LINK OD1 ASP B 297 CA CA B 402 1555 1555 2.60 LINK OD2 ASP B 297 CA CA B 402 1555 1555 2.42 LINK OE2 GLU B 301 CA CA B 402 1555 1555 2.60 LINK OE1 GLU B 301 CA CA B 402 1555 1555 2.60 LINK OE1 GLU B 301 CA CA B 403 1555 1555 2.36 LINK OE1 GLU B 321 CA CA B 401 1555 1555 2.61 LINK OD1 ASN B 323 CA CA B 401 1555 1555 2.53 LINK OD1 ASP B 324 CA CA B 402 1555 1555 2.55 LINK OE1 GLU B 329 CA CA B 401 1555 1555 2.41 LINK O GLU B 329 CA CA B 402 1555 1555 2.38 LINK OD1 ASP B 330 CA CA B 402 1555 1555 2.49 LINK OD1 ASP B 330 CA CA B 403 1555 1555 2.46 LINK OD2 ASP B 330 CA CA B 403 1555 1555 2.50 LINK OD1 ASN B 341 CA CA B 401 1555 1555 2.37 LINK OD1 ASP B 342 CA CA B 401 1555 1555 2.34 LINK O ASP B 342 CA CA B 401 1555 1555 2.70 LINK CA CA B 401 O HOH B 406 1555 1555 2.60 LINK CA CA B 401 O HOH B 418 1555 1555 2.53 LINK CA CA B 402 O HOH B 422 1555 1555 2.23 LINK CA CA B 403 O HOH B 417 1555 1555 2.49 LINK CA CA B 403 O HOH B 439 1555 1555 2.43 LINK CA CA B 403 O HOH B 445 1555 1555 2.24 LINK CA CA B 403 O HOH B 470 1555 1555 2.30 LINK OD2 ASP C 297 CA CA C 402 1555 1555 2.49 LINK OD1 ASP C 297 CA CA C 402 1555 1555 2.73 LINK OE1 GLU C 301 CA CA C 402 1555 1555 2.60 LINK OE2 GLU C 301 CA CA C 402 1555 1555 2.50 LINK OE1 GLU C 301 CA CA C 403 1555 1555 2.38 LINK OE1 GLU C 321 CA CA C 401 1555 1555 2.73 LINK OD1 ASN C 323 CA CA C 401 1555 1555 2.45 LINK OD1 ASP C 324 CA CA C 402 1555 1555 2.58 LINK OE1 GLU C 329 CA CA C 401 1555 1555 2.30 LINK O GLU C 329 CA CA C 402 1555 1555 2.43 LINK OD1 ASP C 330 CA CA C 402 1555 1555 2.59 LINK OD1 ASP C 330 CA CA C 403 1555 1555 2.58 LINK OD2 ASP C 330 CA CA C 403 1555 1555 2.57 LINK OD1 ASN C 341 CA CA C 401 1555 1555 2.36 LINK O ASP C 342 CA CA C 401 1555 1555 2.68 LINK OD1 ASP C 342 CA CA C 401 1555 1555 2.23 LINK CA CA C 401 O HOH C 411 1555 1555 2.57 LINK CA CA C 401 O HOH C 422 1555 1555 2.68 LINK CA CA C 402 O HOH C 409 1555 1555 2.36 LINK CA CA C 403 O HOH C 421 1555 1555 2.25 LINK CA CA C 403 O HOH C 450 1555 1555 2.16 LINK CA CA C 403 O HOH C 454 1555 1555 2.41 LINK CA CA C 403 O HOH C 500 1555 1555 2.57 CISPEP 1 PHE A 234 PRO A 235 0 -0.76 CISPEP 2 GLU A 321 PRO A 322 0 -0.06 CISPEP 3 PHE B 234 PRO B 235 0 -0.55 CISPEP 4 GLU B 321 PRO B 322 0 0.01 CISPEP 5 PHE C 234 PRO C 235 0 0.27 CISPEP 6 GLU C 321 PRO C 322 0 -0.82 SITE 1 AC1 7 GLU A 321 ASN A 323 GLU A 329 ASN A 341 SITE 2 AC1 7 ASP A 342 HOH A 416 HOH A 447 SITE 1 AC2 6 ASP A 297 GLU A 301 ASP A 324 GLU A 329 SITE 2 AC2 6 ASP A 330 HOH A 425 SITE 1 AC3 6 GLU A 301 ASP A 330 HOH A 421 HOH A 437 SITE 2 AC3 6 HOH A 469 HOH A 524 SITE 1 AC4 6 GLU A 232 HOH A 449 HOH A 455 GLU B 232 SITE 2 AC4 6 HOH B 428 GLU C 232 SITE 1 AC5 7 GLU B 321 ASN B 323 GLU B 329 ASN B 341 SITE 2 AC5 7 ASP B 342 HOH B 406 HOH B 418 SITE 1 AC6 6 ASP B 297 GLU B 301 ASP B 324 GLU B 329 SITE 2 AC6 6 ASP B 330 HOH B 422 SITE 1 AC7 6 GLU B 301 ASP B 330 HOH B 417 HOH B 439 SITE 2 AC7 6 HOH B 445 HOH B 470 SITE 1 AC8 7 GLU C 321 ASN C 323 GLU C 329 ASN C 341 SITE 2 AC8 7 ASP C 342 HOH C 411 HOH C 422 SITE 1 AC9 6 ASP C 297 GLU C 301 ASP C 324 GLU C 329 SITE 2 AC9 6 ASP C 330 HOH C 409 SITE 1 BC1 6 GLU C 301 ASP C 330 HOH C 421 HOH C 450 SITE 2 BC1 6 HOH C 454 HOH C 500 CRYST1 55.550 108.520 55.690 90.00 91.20 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018002 0.000000 0.000377 0.00000 SCALE2 0.000000 0.009215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017960 0.00000