HEADER ANTIMICROBIAL PROTEIN 04-JUL-03 1PXQ TITLE STRUCTURE OF SUBTILISIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANTILISTERIAL BACTERIOCIN SUBTILISIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: JH642 KEYWDS THIOETHER BRIDGE, CYCLIC PEPTIDE, BACTERIOCIN, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR K.E.KAWULKA,T.SPRULES,R.T.MCKAY,P.MERCIER,C.M.DIAPER,P.ZUBER, AUTHOR 2 J.C.VEDERAS REVDAT 3 05-OCT-11 1PXQ 1 CAVEAT HET HETATM LINK REVDAT 3 2 1 REMARK SEQRES VERSN REVDAT 2 24-FEB-09 1PXQ 1 VERSN REVDAT 1 22-JUN-04 1PXQ 0 JRNL AUTH K.E.KAWULKA,T.SPRULES,C.M.DIAPER,R.M.WHITTAL,R.T.MCKAY, JRNL AUTH 2 P.MERCIER,P.ZUBER,J.C.VEDERAS JRNL TITL STRUCTURE OF SUBTILISIN A, A CYCLIC ANTIMICROBIAL PEPTIDE JRNL TITL 2 FROM BACILLUS SUBTILIS WITH UNUSUAL SULFUR TO ALPHA-CARBON JRNL TITL 3 CROSS-LINKS: FORMATION AND REDUCTION OF JRNL TITL 4 ALPHA-THIO-ALPHA-AMINO ACID DERIVATIVES JRNL REF BIOCHEMISTRY V. 43 3385 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15035610 JRNL DOI 10.1021/BI0359527 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.KAWULKA,T.SPRULES,R.T.MCKAY,P.MERCIER,C.M.DIAPER,P.ZUBER, REMARK 1 AUTH 2 J.C.VEDERAS REMARK 1 TITL STRUCTURE OF SUBTILISIN A, AN ANTIMICROBIAL PEPTIDE FROM REMARK 1 TITL 2 BACILLUS SUBTILIS WITH UNUSUAL POSTTRANSLATIONAL REMARK 1 TITL 3 MODIFICATIONS LINKING CYSTEINE SULFURS TO ALPHA-CARBONS OF REMARK 1 TITL 4 PHENYLALANINE AND THREONINE REMARK 1 REF J.AM.CHEM.SOC. V. 125 4726 2003 REMARK 1 REFN ISSN 0002-7863 REMARK 1 DOI 10.1021/JA029654T REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T., ADAMS, P.D., CLORE, G.M., DELANO, REMARK 3 W.L., GROS, P., GROSSE-KUNSTLEVE, R.W., JIANG, REMARK 3 J.S., KUSZEWSKI, J., NILGES, M., PANNU, N.S., READ, REMARK 3 R.J., RICE, L.M., SIMONSON, T., WARREN, G.L. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 301 NOE-DERIVED DISTANCE CONSTRAINTS REMARK 3 AND 20 DIHEDRAL ANGLE RESTRAINTS WERE USED TO CALCULATE THE REMARK 3 STRUCTURES. REMARK 4 REMARK 4 1PXQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019677. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : SUBA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE 2.2, NMRVIEW 5.0, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : DYNAMIC ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 1 O GLY A 35 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 4 49.90 -76.59 REMARK 500 1 CYS A 7 46.13 -154.78 REMARK 500 1 ILE A 9 -71.57 -44.57 REMARK 500 1 ALA A 12 89.87 -164.24 REMARK 500 1 ILE A 19 32.12 85.98 REMARK 500 1 ASP A 21 119.02 77.52 REMARK 500 1 PHE A 22 56.87 15.52 REMARK 500 1 2TL A 28 -28.85 -45.12 REMARK 500 2 LYS A 2 -81.37 -82.70 REMARK 500 2 CYS A 7 65.92 -155.02 REMARK 500 2 ILE A 9 102.03 -59.82 REMARK 500 2 ALA A 12 88.15 -158.83 REMARK 500 2 ILE A 19 35.02 86.01 REMARK 500 2 ASP A 21 109.58 78.61 REMARK 500 2 PHE A 22 55.29 32.20 REMARK 500 2 2TL A 28 -165.59 -54.55 REMARK 500 2 DPN A 31 -19.93 -59.42 REMARK 500 3 CYS A 4 26.29 -156.97 REMARK 500 3 THR A 6 41.93 -78.23 REMARK 500 3 CYS A 7 39.62 174.83 REMARK 500 3 ILE A 9 104.52 -52.25 REMARK 500 3 ALA A 12 80.08 -160.01 REMARK 500 3 ILE A 19 37.71 86.05 REMARK 500 3 ASP A 21 109.31 76.13 REMARK 500 3 PHE A 22 58.00 31.24 REMARK 500 3 GLU A 23 41.08 -93.64 REMARK 500 3 2TL A 28 19.45 -149.15 REMARK 500 4 CYS A 7 65.83 -154.89 REMARK 500 4 ALA A 11 106.46 -50.84 REMARK 500 4 ALA A 12 28.70 -167.13 REMARK 500 4 ASP A 16 31.66 -99.17 REMARK 500 4 ILE A 19 59.82 86.21 REMARK 500 4 ASP A 21 117.01 63.27 REMARK 500 4 PHE A 22 80.06 -24.78 REMARK 500 4 ILE A 24 -70.76 -88.89 REMARK 500 5 LYS A 2 41.51 -83.15 REMARK 500 5 CYS A 4 26.70 45.75 REMARK 500 5 CYS A 7 49.78 -155.27 REMARK 500 5 ALA A 12 57.15 -159.73 REMARK 500 5 ASP A 16 30.32 -97.60 REMARK 500 5 ILE A 19 58.83 86.03 REMARK 500 5 PRO A 20 38.82 -94.19 REMARK 500 5 ASP A 21 109.19 48.32 REMARK 500 5 PHE A 22 83.09 -14.67 REMARK 500 5 2TL A 28 -41.24 -36.56 REMARK 500 5 TRP A 34 -76.93 -131.09 REMARK 500 6 THR A 6 49.70 -78.21 REMARK 500 6 CYS A 7 44.38 -178.26 REMARK 500 6 ILE A 9 -74.86 -58.37 REMARK 500 6 ALA A 11 107.33 -54.63 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPN A 31 DBREF 1PXQ A 1 35 UNP O07623 SBOA_BACSU 9 43 SEQRES 1 A 35 ASN LYS GLY CYS ALA THR CYS SER ILE GLY ALA ALA CYS SEQRES 2 A 35 LEU VAL ASP GLY PRO ILE PRO ASP PHE GLU ILE ALA GLY SEQRES 3 A 35 ALA 2TL GLY LEU DPN GLY LEU TRP GLY HET 2TL A 28 13 HET DPN A 31 19 HETNAM 2TL D-ALLOTHREONINE HETNAM DPN D-PHENYLALANINE FORMUL 1 2TL C4 H9 N O3 FORMUL 1 DPN C9 H11 N O2 HELIX 1 1 2TL A 28 GLY A 35 1 8 LINK C ALA A 27 N 2TL A 28 1555 1555 1.33 LINK C 2TL A 28 N GLY A 29 1555 1555 1.33 LINK C LEU A 30 N DPN A 31 1555 1555 1.33 LINK C DPN A 31 N GLY A 32 1555 1555 1.33 LINK N ASN A 1 C GLY A 35 1555 1555 1.33 LINK SG CYS A 7 CA 2TL A 28 1555 1555 1.77 LINK SG CYS A 13 CA PHE A 22 1555 1555 1.78 LINK SG CYS A 4 CA DPN A 31 1555 1555 1.78 SITE 1 AC1 8 ASN A 1 CYS A 4 2TL A 28 GLY A 29 SITE 2 AC1 8 LEU A 30 GLY A 32 LEU A 33 GLY A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1