HEADER STRUCTURAL PROTEIN 10-JUL-03 1PZ7 TITLE MODULATION OF AGRIN FUNCTION BY ALTERNATIVE SPLICING AND TITLE 2 CA2+ BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGRIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BASAL LAMINA DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: AGRN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AGRIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.STETEFELD,A.T.ALEXANDRESCU,M.W.MACIEJEWSKI,M.JENNY, AUTHOR 2 K.RATHGEB-SZABO,T.SCHULTHESS,R.LANDWEHR,S.FRANK,M.A.RUEGG, AUTHOR 3 R.A.KAMMERER REVDAT 2 24-FEB-09 1PZ7 1 VERSN REVDAT 1 13-APR-04 1PZ7 0 JRNL AUTH J.STETEFELD,A.T.ALEXANDRESCU,M.W.MACIEJEWSKI, JRNL AUTH 2 M.JENNY,K.RATHGEB-SZABO,T.SCHULTHESS,R.LANDWEHR, JRNL AUTH 3 S.FRANK,M.A.RUEGG,R.A.KAMMERER JRNL TITL MODULATION OF AGRIN FUNCTION BY ALTERNATIVE JRNL TITL 2 SPLICING AND CA2+ BINDING. JRNL REF STRUCTURE V. 12 503 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15016366 JRNL DOI 10.1016/J.STR.2004.02.001 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2947 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2664 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.326 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6202 ; 0.672 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 5.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;14.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3283 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 567 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 610 ; 0.233 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2744 ; 0.231 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 371 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.084 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.077 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.261 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 104 ; 0.235 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.185 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 0.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2976 ; 0.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1091 ; 1.133 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1020 ; 1.871 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 25 REMARK 3 RESIDUE RANGE : A 46 A 156 REMARK 3 RESIDUE RANGE : A 157 A 164 REMARK 3 RESIDUE RANGE : A 165 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8140 8.1510 2.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.0052 REMARK 3 T33: 0.0240 T12: -0.0084 REMARK 3 T13: 0.0318 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.1504 L22: 0.5069 REMARK 3 L33: 1.3723 L12: -0.0786 REMARK 3 L13: 0.4035 L23: -0.2381 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0602 S13: -0.0085 REMARK 3 S21: -0.0686 S22: -0.0071 S23: -0.0289 REMARK 3 S31: 0.0707 S32: 0.1133 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 25 REMARK 3 RESIDUE RANGE : B 46 B 156 REMARK 3 RESIDUE RANGE : B 157 B 164 REMARK 3 RESIDUE RANGE : B 165 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4380 17.8890 37.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0129 REMARK 3 T33: 0.0343 T12: -0.0080 REMARK 3 T13: 0.0174 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.8297 L22: 0.8405 REMARK 3 L33: 0.9806 L12: -0.6640 REMARK 3 L13: -0.0655 L23: 0.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: 0.0255 S13: -0.0940 REMARK 3 S21: 0.0221 S22: -0.0371 S23: -0.0618 REMARK 3 S31: 0.0398 S32: -0.0189 S33: -0.0168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1PZ7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97834 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 24.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 276K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.66450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.66450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 33 REMARK 465 ASP A 34 REMARK 465 ALA A 35 REMARK 465 LEU A 36 REMARK 465 ASP A 37 REMARK 465 TYR A 38 REMARK 465 PRO A 39 REMARK 465 SER A 202 REMARK 465 ALA A 203 REMARK 465 LYS A 204 REMARK 465 GLU B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 33 REMARK 465 ASP B 34 REMARK 465 ALA B 35 REMARK 465 LEU B 36 REMARK 465 ASP B 37 REMARK 465 TYR B 38 REMARK 465 PRO B 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 30 N SER A 32 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 31 O HOH A 1069 2555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 66.89 -61.40 REMARK 500 ALA A 9 21.25 -163.50 REMARK 500 ASP A 11 -98.91 75.13 REMARK 500 ASN A 27 77.64 -52.63 REMARK 500 LYS A 31 14.99 21.74 REMARK 500 GLU A 41 -81.33 98.99 REMARK 500 PRO A 42 -118.74 -121.43 REMARK 500 SER A 43 -122.48 52.77 REMARK 500 LYS A 96 149.80 86.64 REMARK 500 ASN A 107 41.58 -84.83 REMARK 500 GLN A 120 -123.55 56.74 REMARK 500 ALA A 161 -1.94 -165.78 REMARK 500 ALA B 12 97.01 -29.47 REMARK 500 ASN B 27 88.72 -40.59 REMARK 500 VAL B 29 -70.35 128.98 REMARK 500 THR B 30 78.73 134.83 REMARK 500 GLU B 41 -162.27 -163.92 REMARK 500 PRO B 42 -149.98 -84.27 REMARK 500 SER B 43 -153.41 81.59 REMARK 500 LYS B 96 152.10 88.42 REMARK 500 ASN B 107 49.45 -79.74 REMARK 500 GLN B 120 -121.89 57.30 REMARK 500 ARG B 157 77.66 -64.01 REMARK 500 SER B 159 31.32 -168.69 REMARK 500 ARG B 183 -1.57 76.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 30 LYS B 31 123.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 893 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1029 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 11.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 842 O REMARK 620 2 ASP A 76 OD1 75.2 REMARK 620 3 LEU A 93 O 73.1 90.0 REMARK 620 4 GLN A 143 O 166.3 93.1 100.2 REMARK 620 5 ASP A 145 OD2 75.5 87.3 148.2 111.6 REMARK 620 6 HOH A 809 O 95.8 165.9 97.8 96.9 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 76 OD2 REMARK 620 2 GLN B 143 O 93.2 REMARK 620 3 ASP B 145 OD1 83.6 115.3 REMARK 620 4 HOH B 731 O 71.0 163.9 67.2 REMARK 620 5 LEU B 93 O 89.8 98.6 145.7 78.9 REMARK 620 6 HOH B 904 O 160.4 99.4 77.4 96.7 103.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q56 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE B0 ISOFORM OF THE AGRIN G3 DOMAIN IN REMARK 900 ITS CA2+ BOUND STATE DBREF 1PZ7 A 1 204 UNP P31696 AGRN_CHICK 1752 1955 DBREF 1PZ7 B 1 204 UNP P31696 AGRN_CHICK 1752 1955 SEQRES 1 A 204 GLU LYS VAL ILE ILE GLU LYS ALA ALA GLY ASP ALA GLU SEQRES 2 A 204 ALA ILE ALA PHE ASP GLY ARG THR TYR MET GLU TYR HIS SEQRES 3 A 204 ASN ALA VAL THR LYS SER PRO ASP ALA LEU ASP TYR PRO SEQRES 4 A 204 ALA GLU PRO SER GLU LYS ALA LEU GLN SER ASN HIS PHE SEQRES 5 A 204 GLU LEU SER ILE LYS THR GLU ALA THR GLN GLY LEU ILE SEQRES 6 A 204 LEU TRP SER GLY LYS GLY LEU GLU ARG SER ASP TYR ILE SEQRES 7 A 204 ALA LEU ALA ILE VAL ASP GLY PHE VAL GLN MET MET TYR SEQRES 8 A 204 ASP LEU GLY SER LYS PRO VAL VAL LEU ARG SER THR VAL SEQRES 9 A 204 PRO ILE ASN THR ASN HIS TRP THR HIS ILE LYS ALA TYR SEQRES 10 A 204 ARG VAL GLN ARG GLU GLY SER LEU GLN VAL GLY ASN GLU SEQRES 11 A 204 ALA PRO ILE THR GLY SER SER PRO LEU GLY ALA THR GLN SEQRES 12 A 204 LEU ASP THR ASP GLY ALA LEU TRP LEU GLY GLY MET GLU SEQRES 13 A 204 ARG LEU SER VAL ALA HIS LYS LEU PRO LYS ALA TYR SER SEQRES 14 A 204 THR GLY PHE ILE GLY CYS ILE ARG ASP VAL ILE VAL ASP SEQRES 15 A 204 ARG GLN GLU LEU HIS LEU VAL GLU ASP ALA LEU ASN ASN SEQRES 16 A 204 PRO THR ILE LEU HIS CYS SER ALA LYS SEQRES 1 B 204 GLU LYS VAL ILE ILE GLU LYS ALA ALA GLY ASP ALA GLU SEQRES 2 B 204 ALA ILE ALA PHE ASP GLY ARG THR TYR MET GLU TYR HIS SEQRES 3 B 204 ASN ALA VAL THR LYS SER PRO ASP ALA LEU ASP TYR PRO SEQRES 4 B 204 ALA GLU PRO SER GLU LYS ALA LEU GLN SER ASN HIS PHE SEQRES 5 B 204 GLU LEU SER ILE LYS THR GLU ALA THR GLN GLY LEU ILE SEQRES 6 B 204 LEU TRP SER GLY LYS GLY LEU GLU ARG SER ASP TYR ILE SEQRES 7 B 204 ALA LEU ALA ILE VAL ASP GLY PHE VAL GLN MET MET TYR SEQRES 8 B 204 ASP LEU GLY SER LYS PRO VAL VAL LEU ARG SER THR VAL SEQRES 9 B 204 PRO ILE ASN THR ASN HIS TRP THR HIS ILE LYS ALA TYR SEQRES 10 B 204 ARG VAL GLN ARG GLU GLY SER LEU GLN VAL GLY ASN GLU SEQRES 11 B 204 ALA PRO ILE THR GLY SER SER PRO LEU GLY ALA THR GLN SEQRES 12 B 204 LEU ASP THR ASP GLY ALA LEU TRP LEU GLY GLY MET GLU SEQRES 13 B 204 ARG LEU SER VAL ALA HIS LYS LEU PRO LYS ALA TYR SER SEQRES 14 B 204 THR GLY PHE ILE GLY CYS ILE ARG ASP VAL ILE VAL ASP SEQRES 15 B 204 ARG GLN GLU LEU HIS LEU VAL GLU ASP ALA LEU ASN ASN SEQRES 16 B 204 PRO THR ILE LEU HIS CYS SER ALA LYS HET CA A 701 1 HET CA B 702 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *485(H2 O) HELIX 1 1 PRO A 165 THR A 170 5 6 HELIX 2 2 PRO B 165 THR B 170 5 6 SHEET 1 A 6 ILE A 15 ASP A 18 0 SHEET 2 A 6 ILE A 173 VAL A 181 -1 O GLY A 174 N PHE A 17 SHEET 3 A 6 SER A 49 THR A 58 -1 N GLU A 53 O ILE A 180 SHEET 4 A 6 THR A 112 VAL A 119 -1 O ALA A 116 N PHE A 52 SHEET 5 A 6 GLU A 122 VAL A 127 -1 O GLU A 122 N VAL A 119 SHEET 6 A 6 ILE A 133 SER A 136 -1 O GLY A 135 N GLY A 123 SHEET 1 B 3 ILE A 15 ASP A 18 0 SHEET 2 B 3 ILE A 173 VAL A 181 -1 O GLY A 174 N PHE A 17 SHEET 3 B 3 GLN A 184 GLU A 185 -1 O GLN A 184 N VAL A 181 SHEET 1 C 6 MET A 23 HIS A 26 0 SHEET 2 C 6 ALA A 149 LEU A 152 -1 O LEU A 150 N TYR A 25 SHEET 3 C 6 GLY A 63 SER A 68 -1 N TRP A 67 O TRP A 151 SHEET 4 C 6 TYR A 77 VAL A 83 -1 O ILE A 82 N GLY A 63 SHEET 5 C 6 PHE A 86 ASP A 92 -1 O PHE A 86 N VAL A 83 SHEET 6 C 6 VAL A 98 PRO A 105 -1 O LEU A 100 N MET A 89 SHEET 1 D 2 LYS A 45 LEU A 47 0 SHEET 2 D 2 LEU A 144 THR A 146 -1 O LEU A 144 N LEU A 47 SHEET 1 E 6 ALA B 14 ASP B 18 0 SHEET 2 E 6 ILE B 173 VAL B 181 -1 O GLY B 174 N PHE B 17 SHEET 3 E 6 SER B 49 THR B 58 -1 N GLU B 53 O ILE B 180 SHEET 4 E 6 THR B 112 VAL B 119 -1 O THR B 112 N ILE B 56 SHEET 5 E 6 GLU B 122 VAL B 127 -1 O GLU B 122 N VAL B 119 SHEET 6 E 6 ILE B 133 SER B 136 -1 O ILE B 133 N LEU B 125 SHEET 1 F 3 ALA B 14 ASP B 18 0 SHEET 2 F 3 ILE B 173 VAL B 181 -1 O GLY B 174 N PHE B 17 SHEET 3 F 3 GLN B 184 GLU B 185 -1 O GLN B 184 N VAL B 181 SHEET 1 G 6 MET B 23 HIS B 26 0 SHEET 2 G 6 ALA B 149 LEU B 152 -1 O LEU B 150 N TYR B 25 SHEET 3 G 6 GLY B 63 SER B 68 -1 N TRP B 67 O TRP B 151 SHEET 4 G 6 TYR B 77 VAL B 83 -1 O ILE B 82 N GLY B 63 SHEET 5 G 6 PHE B 86 ASP B 92 -1 O PHE B 86 N VAL B 83 SHEET 6 G 6 VAL B 98 PRO B 105 -1 O LEU B 100 N MET B 89 SHEET 1 H 2 LYS B 45 LEU B 47 0 SHEET 2 H 2 LEU B 144 THR B 146 -1 O LEU B 144 N LEU B 47 SSBOND 1 CYS A 175 CYS A 201 1555 1555 2.03 SSBOND 2 CYS B 175 CYS B 201 1555 1555 2.03 LINK CA CA A 701 O HOH A 842 1555 1555 2.79 LINK CA CA A 701 OD1 ASP A 76 1555 1555 2.33 LINK CA CA A 701 O LEU A 93 1555 1555 2.31 LINK CA CA A 701 O GLN A 143 1555 1555 2.33 LINK CA CA A 701 OD2 ASP A 145 1555 1555 2.45 LINK CA CA A 701 O HOH A 809 1555 1555 2.40 LINK CA CA B 702 OD2 ASP B 76 1555 1555 2.36 LINK CA CA B 702 O GLN B 143 1555 1555 2.39 LINK CA CA B 702 OD1 ASP B 145 1555 1555 2.63 LINK CA CA B 702 O HOH B 731 1555 1555 2.89 LINK CA CA B 702 O LEU B 93 1555 1555 2.31 LINK CA CA B 702 O HOH B 904 1555 1555 2.40 SITE 1 AC1 6 ASP A 76 LEU A 93 GLN A 143 ASP A 145 SITE 2 AC1 6 HOH A 809 HOH A 842 SITE 1 AC2 6 ASP B 76 LEU B 93 GLN B 143 ASP B 145 SITE 2 AC2 6 HOH B 731 HOH B 904 CRYST1 101.329 57.540 74.621 90.00 127.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009869 0.000000 0.007464 0.00000 SCALE2 0.000000 0.017379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016802 0.00000