HEADER TRANSFERASE 11-JUL-03 1PZM TITLE CRYSTAL STRUCTURE OF HGPRT-ASE FROM LEISHMANIA TARENTOLAE IN COMPLEX TITLE 2 WITH GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HGPRT; COMPND 5 EC: 2.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA TARENTOLAE; SOURCE 3 ORGANISM_TAXID: 5689; SOURCE 4 GENE: HGPRT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A(+) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.MONZANI,S.TRAPANI,G.OLIVA,O.H.THIEMANN REVDAT 5 16-AUG-23 1PZM 1 REMARK SEQADV REVDAT 4 13-JUL-11 1PZM 1 VERSN REVDAT 3 24-FEB-09 1PZM 1 VERSN REVDAT 2 04-DEC-07 1PZM 1 JRNL REVDAT 1 27-JUL-04 1PZM 0 JRNL AUTH P.S.MONZANI,S.TRAPANI,O.H.THIEMANN,G.OLIVA JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA TARENTOLAE JRNL TITL 2 HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE. JRNL REF BMC STRUCT.BIOL. V. 7 59 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17894860 JRNL DOI 10.1186/1472-6807-7-59 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.S.MONZANI,J.D.ALFONZO,L.SIMPSON,G.OLIVA,O.H.THIEMANN REMARK 1 TITL CLONING, CHARACTERIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF LEISHMANIA HYPOXANTHINE-GUANINE REMARK 1 TITL 3 PHOSPHORIBOSYLTRANSFERASE REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1598 3 2002 REMARK 1 REFN ISSN 0006-3002 REMARK 1 DOI 10.1016/S0167-4838(02)00334-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.09 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 24231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.84000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3750 ; 2.028 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;13.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1987 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1228 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1695 ; 1.200 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2739 ; 2.012 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 3.035 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 4.491 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 202 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5410 48.7630 29.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.4934 T22: 0.0065 REMARK 3 T33: 0.0546 T12: -0.0397 REMARK 3 T13: -0.0104 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6888 L22: 2.7784 REMARK 3 L33: 1.2448 L12: -0.2400 REMARK 3 L13: -0.0781 L23: -0.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.1159 S13: 0.1187 REMARK 3 S21: 0.1973 S22: -0.0621 S23: -0.2914 REMARK 3 S31: -0.2053 S32: 0.0905 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 201 REMARK 3 RESIDUE RANGE : B 302 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1370 25.7170 32.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.4402 T22: 0.0059 REMARK 3 T33: 0.0332 T12: -0.0164 REMARK 3 T13: -0.0057 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.7328 L22: 1.3119 REMARK 3 L33: 0.6084 L12: -0.3069 REMARK 3 L13: 0.0609 L23: -0.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0387 S13: -0.0186 REMARK 3 S21: -0.0373 S22: -0.0202 S23: -0.0608 REMARK 3 S31: 0.0500 S32: 0.0153 S33: -0.0185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.53700 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1TC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, I-PROPANOL, GLYCEROL, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.05200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.79900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.79900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.05200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTENT REPRESENTS THE BIOLOGICAL REMARK 300 ASSEMBLY, WHICH IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 HIS A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 ARG A 18 REMARK 465 ASN A 19 REMARK 465 SER A 95 REMARK 465 TYR A 96 REMARK 465 GLY A 97 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 VAL A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 GLN A 105 REMARK 465 VAL A 106 REMARK 465 ARG A 107 REMARK 465 TYR A 203 REMARK 465 TYR A 204 REMARK 465 GLU A 205 REMARK 465 LYS A 206 REMARK 465 ALA A 207 REMARK 465 GLU A 208 REMARK 465 SER A 209 REMARK 465 LYS A 210 REMARK 465 LEU A 211 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 ASP B 10 REMARK 465 HIS B 11 REMARK 465 VAL B 12 REMARK 465 GLY B 13 REMARK 465 ASP B 14 REMARK 465 VAL B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 ARG B 18 REMARK 465 ASN B 19 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 TYR B 96 REMARK 465 GLY B 97 REMARK 465 SER B 98 REMARK 465 GLY B 99 REMARK 465 VAL B 100 REMARK 465 GLU B 101 REMARK 465 THR B 102 REMARK 465 SER B 103 REMARK 465 GLY B 104 REMARK 465 GLN B 105 REMARK 465 GLU B 202 REMARK 465 TYR B 203 REMARK 465 TYR B 204 REMARK 465 GLU B 205 REMARK 465 LYS B 206 REMARK 465 ALA B 207 REMARK 465 GLU B 208 REMARK 465 SER B 209 REMARK 465 LYS B 210 REMARK 465 LEU B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CE NZ REMARK 470 SER A 94 CB OG REMARK 470 LEU A 109 CB CG CD1 CD2 REMARK 470 ARG A 113 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 118 CB CG OD1 ND2 REMARK 470 LYS A 145 CB CG CD CE NZ REMARK 470 LYS A 201 CB CG CD CE NZ REMARK 470 GLU A 202 CB CG CD OE1 OE2 REMARK 470 MET B 22 CG SD CE REMARK 470 SER B 23 CB OG REMARK 470 LYS B 49 CE NZ REMARK 470 ARG B 113 NE CZ NH1 NH2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 317 O HOH B 400 2.07 REMARK 500 O3' 5GP A 301 O HOH A 378 2.09 REMARK 500 O HOH A 409 O HOH A 410 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 20 CZ TYR B 20 CE2 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 185 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 148.30 -170.63 REMARK 500 LEU A 109 -32.86 -143.02 REMARK 500 ASP A 129 -85.32 -116.19 REMARK 500 LYS A 157 75.67 -112.14 REMARK 500 GLU A 188 -12.21 83.19 REMARK 500 TYR A 190 0.47 80.51 REMARK 500 LYS A 201 -14.26 -21.34 REMARK 500 ASP B 129 -90.55 -119.37 REMARK 500 LYS B 157 69.13 -118.43 REMARK 500 GLU B 188 -3.50 69.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 302 DBREF 1PZM A 1 211 UNP Q9NJI5 Q9NJI5_LEITA 1 210 DBREF 1PZM B 1 211 UNP Q9NJI5 Q9NJI5_LEITA 1 210 SEQADV 1PZM ARG A 176 UNP Q9NJI5 HIS 176 CONFLICT SEQADV 1PZM GLY A 183 UNP Q9NJI5 VAL 183 CONFLICT SEQADV 1PZM MET A 184 UNP Q9NJI5 TRP 184 CONFLICT SEQADV 1PZM ASP A 185 UNP Q9NJI5 THR 185 CONFLICT SEQADV 1PZM GLU A 188 UNP Q9NJI5 ASP 188 CONFLICT SEQADV 1PZM SER A 189 UNP Q9NJI5 INSERTION SEQADV 1PZM TYR A 190 UNP Q9NJI5 LEU 189 CONFLICT SEQADV 1PZM GLU A 192 UNP Q9NJI5 GLY 191 CONFLICT SEQADV 1PZM LEU A 193 UNP Q9NJI5 VAL 192 CONFLICT SEQADV 1PZM ARG A 194 UNP Q9NJI5 PRO 193 CONFLICT SEQADV 1PZM ARG B 176 UNP Q9NJI5 HIS 176 CONFLICT SEQADV 1PZM GLY B 183 UNP Q9NJI5 VAL 183 CONFLICT SEQADV 1PZM MET B 184 UNP Q9NJI5 TRP 184 CONFLICT SEQADV 1PZM ASP B 185 UNP Q9NJI5 THR 185 CONFLICT SEQADV 1PZM GLU B 188 UNP Q9NJI5 ASP 188 CONFLICT SEQADV 1PZM SER B 189 UNP Q9NJI5 INSERTION SEQADV 1PZM TYR B 190 UNP Q9NJI5 LEU 189 CONFLICT SEQADV 1PZM GLU B 192 UNP Q9NJI5 GLY 191 CONFLICT SEQADV 1PZM LEU B 193 UNP Q9NJI5 VAL 192 CONFLICT SEQADV 1PZM ARG B 194 UNP Q9NJI5 PRO 193 CONFLICT SEQRES 1 A 211 MET SER ASN SER VAL LYS SER PRO SER ASP HIS VAL GLY SEQRES 2 A 211 ASP VAL GLY ARG ARG ASN TYR PRO MET SER ALA ARG THR SEQRES 3 A 211 LEU VAL THR GLN GLU GLN VAL TRP ALA ALA THR ALA LYS SEQRES 4 A 211 CYS ALA LYS LYS ILE ALA ALA ASP TYR LYS ASP PHE HIS SEQRES 5 A 211 LEU THR ALA ASP ASN PRO LEU TYR LEU LEU CYS VAL LEU SEQRES 6 A 211 LYS GLY SER PHE ILE PHE THR ALA ASP LEU ALA ARG PHE SEQRES 7 A 211 LEU ALA ASP GLU GLY VAL PRO VAL LYS VAL GLU PHE ILE SEQRES 8 A 211 CYS ALA SER SER TYR GLY SER GLY VAL GLU THR SER GLY SEQRES 9 A 211 GLN VAL ARG MET LEU LEU ASP VAL ARG ASP SER VAL GLU SEQRES 10 A 211 ASN ARG HIS ILE MET LEU VAL GLU ASP ILE VAL ASP SER SEQRES 11 A 211 ALA ILE THR LEU GLN TYR LEU MET ARG PHE MET LEU ALA SEQRES 12 A 211 LYS LYS PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP SEQRES 13 A 211 LYS PRO SER GLY ARG LYS VAL ASP VAL LEU VAL ASP TYR SEQRES 14 A 211 PRO VAL ILE THR ILE PRO ARG ALA PHE VAL ILE GLY TYR SEQRES 15 A 211 GLY MET ASP PHE ALA GLU SER TYR ARG GLU LEU ARG ASP SEQRES 16 A 211 ILE CYS VAL LEU LYS LYS GLU TYR TYR GLU LYS ALA GLU SEQRES 17 A 211 SER LYS LEU SEQRES 1 B 211 MET SER ASN SER VAL LYS SER PRO SER ASP HIS VAL GLY SEQRES 2 B 211 ASP VAL GLY ARG ARG ASN TYR PRO MET SER ALA ARG THR SEQRES 3 B 211 LEU VAL THR GLN GLU GLN VAL TRP ALA ALA THR ALA LYS SEQRES 4 B 211 CYS ALA LYS LYS ILE ALA ALA ASP TYR LYS ASP PHE HIS SEQRES 5 B 211 LEU THR ALA ASP ASN PRO LEU TYR LEU LEU CYS VAL LEU SEQRES 6 B 211 LYS GLY SER PHE ILE PHE THR ALA ASP LEU ALA ARG PHE SEQRES 7 B 211 LEU ALA ASP GLU GLY VAL PRO VAL LYS VAL GLU PHE ILE SEQRES 8 B 211 CYS ALA SER SER TYR GLY SER GLY VAL GLU THR SER GLY SEQRES 9 B 211 GLN VAL ARG MET LEU LEU ASP VAL ARG ASP SER VAL GLU SEQRES 10 B 211 ASN ARG HIS ILE MET LEU VAL GLU ASP ILE VAL ASP SER SEQRES 11 B 211 ALA ILE THR LEU GLN TYR LEU MET ARG PHE MET LEU ALA SEQRES 12 B 211 LYS LYS PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP SEQRES 13 B 211 LYS PRO SER GLY ARG LYS VAL ASP VAL LEU VAL ASP TYR SEQRES 14 B 211 PRO VAL ILE THR ILE PRO ARG ALA PHE VAL ILE GLY TYR SEQRES 15 B 211 GLY MET ASP PHE ALA GLU SER TYR ARG GLU LEU ARG ASP SEQRES 16 B 211 ILE CYS VAL LEU LYS LYS GLU TYR TYR GLU LYS ALA GLU SEQRES 17 B 211 SER LYS LEU HET 5GP A 301 37 HET 5GP B 302 24 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 5GP 2(C10 H14 N5 O8 P) FORMUL 5 HOH *243(H2 O) HELIX 1 1 THR A 29 LYS A 49 1 21 HELIX 2 2 ASP A 50 HIS A 52 5 3 HELIX 3 3 SER A 68 GLU A 82 1 15 HELIX 4 4 ALA A 131 ALA A 143 1 13 HELIX 5 5 PRO A 158 ARG A 161 5 4 HELIX 6 6 THR B 29 TYR B 48 1 20 HELIX 7 7 LYS B 49 HIS B 52 5 4 HELIX 8 8 SER B 68 GLU B 82 1 15 HELIX 9 9 VAL B 106 ASP B 114 1 9 HELIX 10 10 ALA B 131 ALA B 143 1 13 HELIX 11 11 PRO B 158 ARG B 161 5 4 SHEET 1 A 3 SER A 23 VAL A 28 0 SHEET 2 A 3 ILE A 196 LEU A 199 -1 O ILE A 196 N VAL A 28 SHEET 3 A 3 VAL A 179 ILE A 180 -1 N ILE A 180 O CYS A 197 SHEET 1 B 5 VAL A 86 ILE A 91 0 SHEET 2 B 5 LEU A 59 VAL A 64 1 N CYS A 63 O GLU A 89 SHEET 3 B 5 HIS A 120 VAL A 128 1 O MET A 122 N LEU A 62 SHEET 4 B 5 SER A 148 ASP A 156 1 O VAL A 152 N LEU A 123 SHEET 5 B 5 TYR A 169 THR A 173 1 O VAL A 171 N VAL A 153 SHEET 1 C 3 ALA B 24 VAL B 28 0 SHEET 2 C 3 ILE B 196 LEU B 199 -1 O VAL B 198 N ARG B 25 SHEET 3 C 3 PHE B 178 ILE B 180 -1 N PHE B 178 O LEU B 199 SHEET 1 D 5 VAL B 86 ILE B 91 0 SHEET 2 D 5 LEU B 59 VAL B 64 1 N CYS B 63 O ILE B 91 SHEET 3 D 5 HIS B 120 VAL B 128 1 O MET B 122 N TYR B 60 SHEET 4 D 5 SER B 148 ASP B 156 1 O SER B 148 N ILE B 121 SHEET 5 D 5 TYR B 169 THR B 173 1 O ILE B 172 N ASP B 156 CISPEP 1 LEU A 65 LYS A 66 0 5.49 CISPEP 2 LEU B 65 LYS B 66 0 0.55 SITE 1 AC1 17 ASP A 126 ILE A 127 ASP A 129 SER A 130 SITE 2 AC1 17 ALA A 131 ILE A 132 THR A 133 LYS A 157 SITE 3 AC1 17 ALA A 177 PHE A 178 VAL A 179 MET A 184 SITE 4 AC1 17 ASP A 185 HOH A 321 HOH A 378 HOH A 403 SITE 5 AC1 17 HOH A 408 SITE 1 AC2 20 ASN B 118 ASP B 126 ILE B 127 ASP B 129 SITE 2 AC2 20 SER B 130 ALA B 131 ILE B 132 THR B 133 SITE 3 AC2 20 LYS B 157 ALA B 177 PHE B 178 VAL B 179 SITE 4 AC2 20 ASP B 185 HOH B 303 HOH B 337 HOH B 352 SITE 5 AC2 20 HOH B 354 HOH B 376 HOH B 429 HOH B 436 CRYST1 58.104 85.443 87.598 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011416 0.00000