HEADER OXIDOREDUCTASE, METAL BINDING PROTEIN 14-JUL-03 1PZS TITLE CRYSTAL STRUCTURE OF A CU-ZN SUPEROXIDE DISMUTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS AT 1.63 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 33-240; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: SODC OR RV0432 OR MT0447 OR MTCY22G10.29; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: QC871; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC19 KEYWDS CU-PROTEIN, BETA CORE, ANTIOXIDANT, METAL BINDING, GREEK KEY BETA KEYWDS 2 BARREL, OXIDOREDUCTASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.DJINOVIC-CARUGO,L.SPAGNOLO,I.TORO REVDAT 7 16-AUG-23 1PZS 1 REMARK LINK REVDAT 6 31-JAN-18 1PZS 1 REMARK REVDAT 5 11-OCT-17 1PZS 1 REMARK REVDAT 4 13-JUL-11 1PZS 1 VERSN REVDAT 3 24-FEB-09 1PZS 1 VERSN REVDAT 2 17-AUG-04 1PZS 1 JRNL REVDAT 1 27-JUL-04 1PZS 0 JRNL AUTH L.SPAGNOLO,I.TORO,M.D'ORAZIO,P.O'NEILL,J.Z.PEDERSEN, JRNL AUTH 2 O.CARUGO,G.ROTILIO,A.BATTISTONI,K.DJINOVIC-CARUGO JRNL TITL UNIQUE FEATURES OF THE SODC-ENCODED SUPEROXIDE DISMUTASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS, A FULLY FUNCTIONAL JRNL TITL 3 COPPER-CONTAINING ENZYME LACKING ZINC IN THE ACTIVE SITE. JRNL REF J.BIOL.CHEM. V. 279 33447 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15155722 JRNL DOI 10.1074/JBC.M404699200 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 19233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1248 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1108 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1695 ; 1.356 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2593 ; 1.858 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 198 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1420 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 227 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 208 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1242 ; 0.253 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 648 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.132 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 69 ; 0.328 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 841 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 1.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 407 ; 2.123 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 347 ; 3.475 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9755 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.634 REMARK 200 RESOLUTION RANGE LOW (A) : 27.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.620 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.27 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JCV.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, ZINC REMARK 280 CHLORIDE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 20K, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.02000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.02000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE TWO REMARK 300 FOLD AXIS: -X, Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 215 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A -36 REMARK 465 SER A -35 REMARK 465 SER A -34 REMARK 465 PRO A -33 REMARK 465 GLN A -32 REMARK 465 HIS A -31 REMARK 465 ALA A -30 REMARK 465 SER A -29 REMARK 465 THR A -28 REMARK 465 VAL A -27 REMARK 465 PRO A -26 REMARK 465 GLY A -25 REMARK 465 THR A -24 REMARK 465 THR A -23 REMARK 465 PRO A -22 REMARK 465 SER A -21 REMARK 465 ILE A -20 REMARK 465 TRP A -19 REMARK 465 THR A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 PRO A -15 REMARK 465 ALA A -14 REMARK 465 PRO A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 ASP A -6 REMARK 465 GLU A -5 REMARK 465 GLU A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 75 O HOH A 448 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 120 -170.33 67.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 172 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 HIS A 49 NE2 151.0 REMARK 620 3 HIS A 126 NE2 95.8 113.1 REMARK 620 4 HOH A 448 O 81.8 102.1 86.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JCV RELATED DB: PDB REMARK 900 REDUCED BRIDGE-BROKEN YEAST CU/ZN SUPEROXIDE DISMUTASE LOW REMARK 900 TEMPERATURE (-180C) STRUCTURE REMARK 900 RELATED ID: 1BZO RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU, ZN SUPEROXIDE REMARK 900 DISMUTASE FROM P. LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY. REMARK 900 RELATED ID: 1ESO RELATED DB: PDB REMARK 900 MONOMERIC CU, ZN SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1XSO RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF XENOPUS LAEVIS CU, ZN SUPEROXIDE REMARK 900 DISMUTASE B DETERMINED BY X-RAY CRYSTALLOGRAPHY AT 1.5 ANGSTROM REMARK 900 RESOLUTION. REMARK 900 RELATED ID: 1EQW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM CU, ZN SUPEROXIDE REMARK 900 DISMUTASE DBREF 1PZS A -34 171 UNP P0A608 SODC_MYCTU 33 240 SEQRES 1 A 208 CYS SER SER PRO GLN HIS ALA SER THR VAL PRO GLY THR SEQRES 2 A 208 THR PRO SER ILE TRP THR GLY SER PRO ALA PRO SER GLY SEQRES 3 A 208 LEU SER GLY HIS ASP GLU GLU SER PRO GLY ALA GLN SER SEQRES 4 A 208 LEU THR SER THR LEU THR ALA PRO ASP GLY THR LYS VAL SEQRES 5 A 208 ALA THR ALA LYS PHE GLU PHE ALA ASN GLY TYR ALA THR SEQRES 6 A 208 VAL THR ILE ALA THR THR GLY VAL GLY LYS LEU THR PRO SEQRES 7 A 208 GLY PHE HIS GLY LEU HIS ILE HIS GLN VAL GLY LYS CYS SEQRES 8 A 208 GLU PRO ASN SER VAL ALA PRO THR GLY GLY ALA PRO GLY SEQRES 9 A 208 ASN PHE LEU SER ALA GLY GLY HIS TYR HIS VAL PRO GLY SEQRES 10 A 208 HIS THR GLY THR PRO ALA SER GLY ASP LEU ALA SER LEU SEQRES 11 A 208 GLN VAL ARG GLY ASP GLY SER ALA MET LEU VAL THR THR SEQRES 12 A 208 THR ASP ALA PHE THR MET ASP ASP LEU LEU SER GLY ALA SEQRES 13 A 208 LYS THR ALA ILE ILE ILE HIS ALA GLY ALA ASP ASN PHE SEQRES 14 A 208 ALA ASN ILE PRO PRO GLU ARG TYR VAL GLN VAL ASN GLY SEQRES 15 A 208 THR PRO GLY PRO ASP GLU THR THR LEU THR THR GLY ASP SEQRES 16 A 208 ALA GLY LYS ARG VAL ALA CYS GLY VAL ILE GLY SER GLY HET CU A 172 1 HETNAM CU COPPER (II) ION FORMUL 2 CU CU 2+ FORMUL 3 HOH *252(H2 O) HELIX 1 1 PHE A 69 GLY A 73 5 5 HELIX 2 2 THR A 111 SER A 117 1 7 HELIX 3 3 ASP A 150 GLY A 157 1 8 SHEET 1 A 4 SER A 2 THR A 8 0 SHEET 2 A 4 LYS A 14 ALA A 23 -1 O ALA A 16 N LEU A 7 SHEET 3 A 4 TYR A 26 THR A 33 -1 O THR A 28 N GLU A 21 SHEET 4 A 4 MET A 102 THR A 107 -1 O THR A 107 N ALA A 27 SHEET 1 B 2 GLY A 42 HIS A 44 0 SHEET 2 B 2 LEU A 93 VAL A 95 -1 O VAL A 95 N GLY A 42 SHEET 1 C 3 LEU A 46 HIS A 49 0 SHEET 2 C 3 ALA A 122 HIS A 126 -1 O ALA A 122 N HIS A 49 SHEET 3 C 3 ARG A 162 VAL A 167 -1 O GLY A 166 N ILE A 123 SSBOND 1 CYS A 54 CYS A 165 1555 1555 2.06 LINK ND1 HIS A 47 CU CU A 172 1555 1555 2.07 LINK NE2 HIS A 49 CU CU A 172 1555 1555 2.05 LINK NE2 HIS A 126 CU CU A 172 1555 1555 2.04 LINK CU CU A 172 O HOH A 448 1555 1555 1.93 CISPEP 1 THR A 84 PRO A 85 0 -0.65 SITE 1 AC1 5 HIS A 47 HIS A 49 HIS A 75 HIS A 126 SITE 2 AC1 5 HOH A 448 CRYST1 70.040 58.420 51.390 90.00 126.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014278 0.000000 0.010755 0.00000 SCALE2 0.000000 0.017117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024362 0.00000