HEADER PROTEIN BINDING 15-JUL-03 1Q02 TITLE NMR STRUCTURE OF THE UBA DOMAIN OF P62 (SQSTM1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUESTOSOME 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: UBIQUITIN-BINDING PROTEIN P62, SQSTM1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL-10 GOLD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS HELICAL BUNDLE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 27 AUTHOR B.CIANI,R.LAYFIELD,J.R.CAVEY,P.W.SHEPPARD,M.S.SEARLE REVDAT 3 02-MAR-22 1Q02 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Q02 1 VERSN REVDAT 1 30-SEP-03 1Q02 0 JRNL AUTH B.CIANI,R.LAYFIELD,J.R.CAVEY,P.W.SHEPPARD,M.S.SEARLE JRNL TITL STRUCTURE OF THE UBIQUITIN-ASSOCIATED DOMAIN OF P62 (SQSTM1) JRNL TITL 2 AND IMPLICATIONS FOR MUTATIONS THAT CAUSE PAGET'S DISEASE OF JRNL TITL 3 BONE JRNL REF J.BIOL.CHEM. V. 278 37409 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12857745 JRNL DOI 10.1074/JBC.M307416200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER, AT (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q02 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019746. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308 REMARK 210 PH : 5.8; 5.8 REMARK 210 IONIC STRENGTH : 50MM POTASSIUM PHOSPHATE; 50MM REMARK 210 POTASSIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM UBA, PHOSPHATE BUFFER PH REMARK 210 5.8, 10% D2O, 90% H2O; 2MM UBA, REMARK 210 PHOSPHATE BUFFER PH 5.8, 90% D2O, REMARK 210 10% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1, ANSIG 3.3 REMARK 210 METHOD USED : RESTRAINED SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 27 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 32 H LYS A 36 1.42 REMARK 500 O ASP A 39 H ALA A 43 1.43 REMARK 500 O LYS A 36 H ASP A 39 1.49 REMARK 500 O LEU A 33 H TYR A 38 1.50 REMARK 500 O ALA A 43 H ILE A 47 1.52 REMARK 500 O TRP A 28 H LEU A 32 1.55 REMARK 500 OD1 ASP A 24 H LEU A 29 1.58 REMARK 500 O LEU A 44 H GLN A 48 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 75.99 -165.68 REMARK 500 1 MET A 20 -63.80 -103.68 REMARK 500 1 SER A 23 -158.24 -105.82 REMARK 500 1 ASP A 24 38.54 -175.80 REMARK 500 1 GLU A 25 -70.82 -39.00 REMARK 500 1 LYS A 36 40.77 -87.63 REMARK 500 1 ASN A 37 50.32 34.04 REMARK 500 1 ASP A 39 39.20 -84.13 REMARK 500 1 TYR A 49 86.29 37.42 REMARK 500 2 GLU A 5 49.89 -106.98 REMARK 500 2 ALA A 6 -78.42 -179.04 REMARK 500 2 ASP A 7 78.99 42.11 REMARK 500 2 SER A 23 -142.07 -62.45 REMARK 500 2 ASP A 24 30.40 -169.25 REMARK 500 2 ASN A 37 64.40 38.01 REMARK 500 2 TYR A 49 27.73 40.13 REMARK 500 2 SER A 50 70.07 41.77 REMARK 500 3 SER A 2 85.78 -166.76 REMARK 500 3 ALA A 6 -49.01 -163.34 REMARK 500 3 MET A 20 -47.14 -135.82 REMARK 500 3 SER A 23 -139.18 -58.33 REMARK 500 3 ASP A 24 29.20 -173.78 REMARK 500 3 LYS A 36 32.59 -148.59 REMARK 500 3 TYR A 49 -167.37 41.73 REMARK 500 3 SER A 50 -74.27 169.71 REMARK 500 3 LYS A 51 74.69 53.67 REMARK 500 4 MET A 20 -62.65 -133.67 REMARK 500 4 SER A 23 -154.13 -111.72 REMARK 500 4 ASP A 24 36.25 -155.48 REMARK 500 4 ASN A 37 71.23 50.31 REMARK 500 4 TYR A 38 46.94 27.29 REMARK 500 4 ILE A 40 -74.46 -47.80 REMARK 500 4 TYR A 49 38.47 35.90 REMARK 500 5 MET A 20 -53.93 -133.39 REMARK 500 5 SER A 23 -151.04 -96.08 REMARK 500 5 ASP A 24 22.22 -156.28 REMARK 500 5 GLU A 25 98.72 -49.45 REMARK 500 5 LYS A 36 47.08 -142.02 REMARK 500 5 ASN A 37 72.42 49.03 REMARK 500 5 ASP A 39 32.64 -96.11 REMARK 500 5 ILE A 40 -80.29 -45.32 REMARK 500 5 TYR A 49 71.91 62.02 REMARK 500 6 SER A 2 70.13 53.60 REMARK 500 6 GLU A 5 66.88 -150.26 REMARK 500 6 MET A 20 -63.28 -105.51 REMARK 500 6 SER A 23 -150.50 -108.12 REMARK 500 6 ASP A 24 38.18 -160.79 REMARK 500 6 TYR A 38 53.95 31.28 REMARK 500 6 TYR A 49 75.47 35.54 REMARK 500 7 SER A 2 -58.48 174.97 REMARK 500 REMARK 500 THIS ENTRY HAS 257 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 9 0.25 SIDE CHAIN REMARK 500 1 ARG A 31 0.30 SIDE CHAIN REMARK 500 2 ARG A 9 0.32 SIDE CHAIN REMARK 500 2 ARG A 31 0.28 SIDE CHAIN REMARK 500 3 ARG A 9 0.15 SIDE CHAIN REMARK 500 3 ARG A 31 0.23 SIDE CHAIN REMARK 500 4 ARG A 9 0.20 SIDE CHAIN REMARK 500 4 ARG A 31 0.32 SIDE CHAIN REMARK 500 5 ARG A 9 0.30 SIDE CHAIN REMARK 500 5 ARG A 31 0.14 SIDE CHAIN REMARK 500 6 ARG A 9 0.23 SIDE CHAIN REMARK 500 6 ARG A 31 0.28 SIDE CHAIN REMARK 500 7 ARG A 9 0.28 SIDE CHAIN REMARK 500 7 ARG A 31 0.31 SIDE CHAIN REMARK 500 8 ARG A 9 0.27 SIDE CHAIN REMARK 500 8 ARG A 31 0.27 SIDE CHAIN REMARK 500 9 ARG A 9 0.23 SIDE CHAIN REMARK 500 9 ARG A 31 0.20 SIDE CHAIN REMARK 500 10 ARG A 9 0.30 SIDE CHAIN REMARK 500 10 ARG A 31 0.32 SIDE CHAIN REMARK 500 11 ARG A 9 0.19 SIDE CHAIN REMARK 500 11 ARG A 31 0.26 SIDE CHAIN REMARK 500 12 ARG A 9 0.31 SIDE CHAIN REMARK 500 12 ARG A 31 0.30 SIDE CHAIN REMARK 500 13 ARG A 9 0.22 SIDE CHAIN REMARK 500 13 ARG A 31 0.25 SIDE CHAIN REMARK 500 14 ARG A 9 0.31 SIDE CHAIN REMARK 500 14 ARG A 31 0.32 SIDE CHAIN REMARK 500 15 ARG A 9 0.27 SIDE CHAIN REMARK 500 15 ARG A 31 0.31 SIDE CHAIN REMARK 500 16 ARG A 9 0.24 SIDE CHAIN REMARK 500 16 ARG A 31 0.32 SIDE CHAIN REMARK 500 17 ARG A 31 0.27 SIDE CHAIN REMARK 500 18 ARG A 9 0.30 SIDE CHAIN REMARK 500 18 ARG A 31 0.29 SIDE CHAIN REMARK 500 19 ARG A 9 0.30 SIDE CHAIN REMARK 500 19 ARG A 31 0.21 SIDE CHAIN REMARK 500 20 ARG A 9 0.20 SIDE CHAIN REMARK 500 20 ARG A 31 0.31 SIDE CHAIN REMARK 500 21 ARG A 9 0.27 SIDE CHAIN REMARK 500 21 ARG A 31 0.26 SIDE CHAIN REMARK 500 22 ARG A 9 0.15 SIDE CHAIN REMARK 500 22 ARG A 31 0.27 SIDE CHAIN REMARK 500 23 ARG A 9 0.27 SIDE CHAIN REMARK 500 23 ARG A 31 0.31 SIDE CHAIN REMARK 500 24 ARG A 9 0.27 SIDE CHAIN REMARK 500 24 ARG A 31 0.29 SIDE CHAIN REMARK 500 25 ARG A 9 0.28 SIDE CHAIN REMARK 500 25 ARG A 31 0.32 SIDE CHAIN REMARK 500 26 ARG A 9 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 53 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Q02 A 3 52 UNP Q13501 SQSTM_HUMAN 387 436 SEQADV 1Q02 GLY A 1 UNP Q13501 CLONING ARTIFACT SEQADV 1Q02 SER A 2 UNP Q13501 CLONING ARTIFACT SEQRES 1 A 52 GLY SER PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER SEQRES 2 A 52 LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY SEQRES 3 A 52 GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP SEQRES 4 A 52 ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS HELIX 1 1 ASP A 7 SER A 19 1 13 HELIX 2 2 GLY A 27 LYS A 36 1 10 HELIX 3 3 ASP A 39 GLN A 48 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1